BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18740.1
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472100 jgi|Araly1|472100|fgenesh2_kg.1__2054__AT1G18740.1 2170 0.0
Ahg476579 jgi|Araly1|476579|fgenesh2_kg.2__1709__AT1G74450.1 466 2e-130
Ahg938064 jgi|Araly1|938064|scaffold_502255.1 99.0 9e-20
> Ahg472100 jgi|Araly1|472100|fgenesh2_kg.1__2054__AT1G18740.1
Length=2168
Score = 2170 bits (1175), Expect = 0.0
Identities = 1380/1474 (94%), Gaps = 34/1474 (2%)
Strand=Plus/Plus
Query 80 atcatcatcactctctctcaatcCAACAAAGaaaaaaaaaGTCTTCTTCtttttttACAA 139
|||||||||||||||||| |||||||| | |||||||||| | ||| || |||| |||
Sbjct 1 ATCATCATCACTCTCTCTTAATCCAAC--A-AAAAAAAAAG-C--CTT-TTATTTTCCAA 53
Query 140 GTCTGAGAATTTTCTACAGAAACAAAAATCT-GATTGTTTTTCCCACT-TTGCATCTGTT 197
|||||||||||||||||||||||| |||||| | || |||| | | | |||||||||||
Sbjct 54 GTCTGAGAATTTTCTACAGAAACACAAATCTGGTTTCCTTTT-CGA-TATTGCATCTGTT 111
Query 198 TTGAGGATGCCAGCTACGGATTTTCAAGGATCATTTGGAAGGTCGTTGCTAAGTTTACGG 257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 CTGAGGATGCCAGCTACGGATTTTCAAGGATCATTTGGAAGGTCGTTGCTAAGTTTACGG 171
Query 258 CGAGACCAAGTTGACTCATCAACAGTCGTCTCCGGAAGTAGTAGCCACCACGAGCCAAGC 317
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 172 CGAGACCAAGTTGACTCAACAACAGTCGTCGCCGGAAGTAGTAGCCACCACGAGCCAAGC 231
Query 318 ACCATGGAGGTTGAGCTAGATTCGTTTCAAAGACAAGTCGCTGAGAAATTCATCGATCTC 377
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 232 AACATGGAGGTTGAGCTAGATTCGTTTCAAAGACAAGTCGCCGAGAAATTCATCGATCTC 291
Query 378 AACGCTTCTTCAAACGACCTTCTCTCTCTCGAATGGATCGGAAAGCTTCTTGATTCTTTC 437
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 292 AACGCCTCTTCAAACGACCTTCTCTCTCTCGAATGGATCGGGAAGCTTCTTGATTCTTTC 351
Query 438 CTCTGTTGTCAAGAAGAGTTTCGAGCTATCGTATTCAACCACCGATCTCAGATCTCTAAA 497
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 352 CTCTGTTGTCAAGAAGAGTTTCGAGCTATTGTATTCAACCACCGATCTCAGATCTC-AAA 410
Query 498 -TCTCCGATGGACCGTTTGATTTCAGATTACTTCGAACGGAGCATCAAAGCTCTAGATGT 556
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 411 GTCTCCGATGGACCGTTTGATTTCAGATTACTTCGAACGGAGTATCAAAGCTCTCGATGT 470
Query 557 CTGTAACGCCATCCGCGACGGTATCGAACAGATCCGTCAATGGGAGAAACTTGCCGATAT 616
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 471 CTGTAACGCAATCCGCGACGGAATCGAACAGATCCGTCAATGGGAGAAACTTGCCGACAT 530
Query 617 TGTGATCTCTGCTTTAGATAGTCACCGTCCGATCGGAGAAGGTCAGCTCCGGCGAGCTAA 676
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 531 CATTATCTCTGCTTTAGATAGTCACCGTCCGATCGGAGAAGGACAGCTCCGGCGAGCTAA 590
Query 677 GAAAGCTCTGATTGATTTAGCAATCGGAATGCTTGACGAGAAAGATCATCCTTCTGGAAC 736
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 591 GAAAGCTCTGATTGATTTAGCAATCGGAATGCTCGACGAGAAAGATCATCCTTCTGGAAC 650
Query 737 CAATCTAGCTCATCGTAACCGTTCATTCGGAAGAGTCAAAGACAGTCACCACCGTTCGAT 796
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CAATCTAGCTCATCGGAACCGTTCATTCGGAAGAGTCAAAGACAGTCACCACCGTTCGAT 710
Query 797 TGGTCATTTCAGATCTCTTTCTTGGAGTGTTTCAAGATCATGGTCAGCTTCTAAGCAGTT 856
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 711 TGGACATTTCAGATCTCTTTCCTGGAGTGTTTCAAGATCGTGGTCAGCTTCTAAGCAATT 770
Query 857 ACAAGCTTTAGCGAGTAACTTGGCAACGCCTCGACCAAACGATGTCGTTGCTAGCAATGG 916
||||||||| || | |||||| ||||||||| |||||||||| |||||||| ||||||||
Sbjct 771 ACAAGCTTTGGCTAATAACTTAGCAACGCCTAGACCAAACGACGTCGTTGCGAGCAATGG 830
Query 917 TTTAGCTGTACCGGTTTACACAATGACTTCGGTTTTGCTTTTTGTGATGTGGGTTTTGGT 976
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 831 TTTAGCTGTACCGGTTTACACCATGACTTCGGTTTTGCTTTTTGTGATGTGGGTTTTGGT 890
Query 977 AGCTGCGATTCCTTGTCAAGACCGTGGATTGCAAGTTAACTTCTTTGTGCCTAGGCATTT 1036
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 891 AGCTGCGATTCCTTGTCAAGACCGTGGATTGCAAGTTAACTTCTTTGTCCCTAGGCATTT 950
Query 1037 CCAATGGGCAGCTCCGGTTATGTCGTTGCACGATAAGATTGTTGAGGAATCTAAGAGAAG 1096
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 951 CCAATGGGCAGCTCCGGTTATGTCGTTGCACGATAAGATTGTTGAGGAATCTAAGAGACG 1010
Query 1097 AGATAGGAAGAATTGTTGTGGTTTGCTTAAGGAGATTGATAGGATTGAGAAGAGTTCGAG 1156
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1011 AGATAGGAAGAATTGTTGTGGTTTGCTTAAGGAGATTGATATGATTGAGAAGAGTTCGAG 1070
Query 1157 GTTGATGAATGAATTGATCGATTCGATTCATTTCCCGTTGAATGATGACAAGGA-AGTTG 1215
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| | |||
Sbjct 1071 GTTGATGAATGAATTGATCGATTCGATTCATTTCCCGTTGAATGATCAGAAGGAGA-TTG 1129
Query 1216 AGGTGAAACAGAGAGTTGATGAGCTTGTTCAAGTTCGTGAAGCTTTGAGAA-ATGGTTTG 1274
||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct 1130 AGGTGAAACAGAGAGTTGATGAGCTTGTTCAGGTTCGTGAAGCTTTGA-AAGATGGTTTG 1188
Query 1275 GATCCGTTTGAGAGGAAAGTAAGAGAAGTTTTCCATCGGATTGTGAGAAGCAGAACTGAG 1334
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 1189 GATCCGTTTGAGAGGAAAGTTAGAGAAGTTTTCCATCGGATTGTGAGAAGCCGAACCGAG 1248
Query 1335 AGTCTTGATTCTCTTTGATCTTGCACATGTTTGTCTGAATATGATGAATGATTCATG--T 1392
||||||||||||||||||||||||||||||||||| ||||||||| | | ||| || |
Sbjct 1249 AGTCTTGATTCTCTTTGATCTTGCACATGTTTGTCCGAATATGATCA-T-ATT--TGGAT 1304
Query 1393 TTGGAttttttgttttgtttttgtttttctctatttatcctttttGATCACTTGTAAAAA 1452
|| ||||||||||| || || || ||||||||||||||||||| ||||||||||||||
Sbjct 1305 TT---TTTTTTGTTTTCTTCTTCTTCTTCTCTATTTATCCTTTTTAATCACTTGTAAAAA 1361
Query 1453 AGAAACTCAAAGAGTGTAGAAGTGTCATCTTCT---CT-TT-GTGATGCTGATAGTGATT 1507
||||||||||||||||||||||||||||||||| || || |||||||| |||||||||
Sbjct 1362 AGAAACTCAAAGAGTGTAGAAGTGTCATCTTCTTAACTCTTTGTGATGCTTATAGTGATT 1421
Query 1508 CTGTTCTTCTTTGTGTAGCTACTTGCTTAGATTG 1541
||||||| | | | |||||||||||||| |||
Sbjct 1422 ATGTTCTT-T--GCGAAGCTACTTGCTTAGTTTG 1452
> Ahg476579 jgi|Araly1|476579|fgenesh2_kg.2__1709__AT1G74450.1
Length=1419
Score = 466 bits (252), Expect = 2e-130
Identities = 913/1216 (75%), Gaps = 109/1216 (9%)
Strand=Plus/Plus
Query 196 TTTTGAGGATGCCAGCTACGGATTTTCAAGGATCATTTGGAAGGTCGTTGCT-AAGTTTA 254
|||||||||||||||| ||||||| |||| ||||||| || ||||| || || || ||||
Sbjct 171 TTTTGAGGATGCCAGCAACGGATTATCAAAGATCATTCGGGAGGTCTTTTCTCAA-TTTA 229
Query 255 CGGCGAGACCAAGTTGACTCATCAACAGTCGTCTC--CGGAAGTAGTAGCCACCACGAG- 311
|| ||||| || | | | | | | || | ||| ||| ||| || | | ||||
Sbjct 230 CGTCGAGA-CACGGCG-GTAAAC-TCGGTTGACTCAACGGCAGT--TA--C-CGTCGAGT 281
Query 312 CCAAGCACCATGGAGGTTGAGCTAGATTCGTTTCAAAGACAAGTCGCTGAGAAATTCATC 371
| || ||||| | ||||| ||||||||||| ||| |||| ||||||| || |||
Sbjct 282 TGACTCA-GATGGAAGCAGAGCTTGATTCGTTTCAGAGAAAAGTTGCTGAGAGGTTTATC 340
Query 372 GATCTCAACG-CT-T-CTT-CAAACGACCTTCTCTCTCTCGAATGGATCGGAAAGCTTCT 427
|||||||| | || | || || || || || ||||| |||||| | || ||||||||
Sbjct 341 GATCTCAATGCCTCTAGTTGTGAA-GATCTACTGTCTCTTGAATGGGTTGGGAAGCTTCT 399
Query 428 TGATTC-TTTCCTCTGTTGTCAAGAAGAGTTTCGAGCTATCGT-ATTCAACCACCGATCT 485
|||||| ||| | | |||||||||||||||||| || ||||| | ||||||| || | |
Sbjct 400 TGATTCGTTT-TTGTCTTGTCAAGAAGAGTTTCGTGCCATCGTCA-TCAACCATCG-T-T 455
Query 486 C-A-GATCT-CTAAATCTCCGATGGACCGTTTGATTTCAGATTACTTCGA-ACGGAGCAT 541
| | ||| | ||||| | ||| ||| || |||||| ||||||||||||| | | || |
Sbjct 456 CGATGAT-TACTAAACCACCGGCGGATCGATTGATTGCAGATTACTTCGAGA-GAAGTGT 513
Query 542 CAAAGCTCTAGATGTCTGTAACGCCATCCGCGACGGTATCGAACAGATCCGTCAATGGGA 601
|||||||| ||||| |||||||| || || || ||| | |||||||||||||||||| |
Sbjct 514 TAAAGCTCTTGATGTTTGTAACGCGATTCGTGATGGTGTTGAACAGATCCGTCAATGGCA 573
Query 602 GAAACTTGCCGATATTGTGATCTCTGC-TT------------T--A-G-A-TAGT--CA- 640
|||||| ||| || || |||| ||| || | | | | |||| |
Sbjct 574 GAAACTAATCGAAATCGTAATCTGTGCTTTCAACAACAACGGTGGAGGAAGTAGTAGTAG 633
Query 641 CC---GTCCGATCGGAGAAGGTCAGCTCCGGCGAGCTAAGAAAG-CTCTGATTGATTTAG 696
|| | || | |||||||||||| | || || || || ||| || ||||||| ||||
Sbjct 634 CCAGAGACCTCTTGGAGAAGGTCAGTTTCGTCGTGC-GAGGAAGACTTTGATTGAGTTAG 692
Query 697 CAATCGGAATGCTTGACGAGAAAGA-TCATCCTTCTGGAA-C-CA--ATC-TAGC-TCAT 749
|||| || |||||||| ||||| || |||| |||| || | || || | || |||
Sbjct 693 CAATTGGTATGCTTGATGAGAAGGATTCAT-CTTC---AAGCTCAGTGTCGTCGCAGCAT 748
Query 750 CGTAACCGTTCATTCGGAA-GAGTCAAAGA-CA--GTCACCACCGTTCGATTGGTCATTT 805
|||||||| || || |||| || ||| || || ||| ||||| | || || |||||
Sbjct 749 CGTAACCGGTCTTTTGGAAGGA-ACAAGGAGCATCTTCATCACCGAACAATCGGGCATTT 807
Query 806 CAGATCTCTTTCTTGGAGTGTTTCAAGATCATGGTCAGCTTCTAAGCAGTTACAAGCT-T 864
||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 808 CAGGTCGCTTTCTTGGAGTGTTTCAAGATCATGGTCTGCTTCTAAGCAATTACAAGCTAT 867
Query 865 TAGCGAGTAACTTGGCAACGCCTCGACCAAACGATGTCGTTGCT--AGC-AATGGT-TTA 920
| | || || || || ||||||||| | | | || | || || | | |||||| ||
Sbjct 868 T-GGGAACAATTTAGCTACGCCTCGAGC-TA-G-TGACATTACTGCAACTAATGGTCTT- 922
Query 921 GCTGTACCGGTTTACACAATGACTTCGGTTTTGCTT-TTTGTGATGTGGG-TTTTGGTAG 978
| ||| |||||||| || ||||||||| | ||| || ||||||||||||| || || |
Sbjct 923 GTTGTTCCGGTTTATACGATGACTTCGATATTG-TTGTTTGTGATGTGGGCGCTT-GTGG 980
Query 979 CTGCGATTCCTTGTCAAGACCGTGGATTGCAAGTTAACTTCTTTGTGCCTAGGCATTTCC 1038
| |||||||||||||||||| | || |||||||| | ||| ||| |||||| ||| ||
Sbjct 981 CAGCGATTCCTTGTCAAGACAGAGGCTTGCAAGTGCATTTCAATGTTCCTAGGAATTACC 1040
Query 1039 AATGGGCAGCTCCGGTT-ATGTCGTTGCACGATAAGATTGTTGAGGAATCTAAG-AGAAG 1096
|||||| || | | ||| |||||||||||||||| |||| |||||||||| ||| || |
Sbjct 1041 AATGGGGAGGTTC-GTTGATGTCGTTGCACGATAGGATTATTGAGGAATCGAAGAAG-CG 1098
Query 1097 AGATAGGAAGAATTGTTGTGGTTTGCTT-AAGGAGATTGAT-AGGATTGAGAAGAGTTCG 1154
|| |||||||| |||||| ||| || || ||||| || | | |||||| ||||||
Sbjct 1099 TGAGAGGAAGAACACTTGTGGGTTG-TTGAAAGAGATACATCA-GTTTGAGAGGAGTTCA 1156
Query 1155 AGGTTGATGAATGAATTGATCGATTC-GATTCA-TTTCCCGTTGAATGATGACAAGGAAG 1212
|| ||||||||||| ||| | ||||| | |||| ||| || ||| |||||| || | ||
Sbjct 1157 AGATTGATGAATGAGTTGGTTGATTCTG-TTCAGTTT-CCTTTGTCTGATGAGAAAG-AG 1213
Query 1213 -TTGAGGTGAAACAGAGAGTTGATGAGCTTGTTCAAG-TTCGTGAAGCTTTG-AGAAATG 1269
| || |||| | |||| ||||| || ||| ||| ||| ||||||||| || ||||
Sbjct 1214 ATGGAAGTGAGAGAGAGGGTTGAGGA-ATTGGGGAAGCTTCAAGAAGCTTTGAAG-AATG 1271
Query 1270 GTTTGGATCCGTTTGAGAGGAAAGTAAGAGAAGT-TTTCCATCGGATTGTGAGAAGCAGA 1328
||||||||||||||||||||||||| || ||||| |||| |||||||||| ||||||||
Sbjct 1272 GTTTGGATCCGTTTGAGAGGAAAGTGAGGGAAGTGTTTC-ATCGGATTGTTCGAAGCAGA 1330
Query 1329 ACTGAGAG-TCTTGAT 1343
|| || || |||||||
Sbjct 1331 ACAGA-AGGTCTTGAT 1345
> Ahg938064 jgi|Araly1|938064|scaffold_502255.1
Length=201
Score = 99.0 bits (53), Expect = 9e-20
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 621 ATCTCTGCTTTAGATAGTCACCGTCCGATCGGAGAAGGTCAGCTCCGGCGAGCTAAGAA 679
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 143 ATCTCTGCTTTAGATAGTCACCGTCCGATCGGAGAATGACAGCTCCGGCGAGCTAAGAA 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58239984605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5