BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18810.1 Length=1435 Score E Sequences producing significant alignments: (Bits) Value Ahg920822 jgi|Araly1|920822|scaffold_102103.1 1452 0.0 > Ahg920822 jgi|Araly1|920822|scaffold_102103.1 Length=1156 Score = 1452 bits (786), Expect = 0.0 Identities = 861/897 (96%), Gaps = 6/897 (1%) Strand=Plus/Plus Query 446 tcctcatccCCAGTTGACGAAAACGACGTCGTCAAGATCAAAAACAAGCCGACATGGAAC 505 |||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||| Sbjct 266 TCCTCATCCCCAATTGACGAAAACGACGTCGTCTAGATCAAGAACAAGCCGACACGGAAC 325 Query 506 GCCAAGTGTAAGATCCGAGTCAAGTTGCAACAGTCAAACCTTTCTCATGAGGATTAACAA 565 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 326 GCCAAGTGTAAGATCCGAGTCAAGTTACAACAGTCAAACCTTTCTCATGAGGATTAAC-A 384 Query 566 CCACAATGAAAATAAGCAACGGAAAATGAACGATACGAGCATCTCTTTTGGTGGGTTTAG 625 ||||||| |||||||||||||||| |||||| || ||| ||||||||||| ||||||| Sbjct 385 --ACAATGAGAATAAGCAACGGAAAACGAACGAGACAAGCCTCTCTTTTGGTCGGTTTAG 442 Query 626 ATGTTACGGTCCCTGCTCTGGGGTCAAAACCGTCCATACCGACCCAAAAAACTCCTGTAA 685 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 443 ATGTTACGGTCCCTGCTCTGGGGTCAAAACCGTCCATACCGACCCAAAAATCTCCTGTAA 502 Query 686 AAGTAGAAATTCCGATCGGGATTTTGTTGCTTACGACGCAAGAAAGCACAACGACAAACC 745 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 503 AAGTAGAAATTCCGATCGGGATTTCGTTGCTTACGACGCAAGAAAGCACAACGACAAGCC 562 Query 746 AAGACTCCATTTTGAAGCCAAGAAAGCGGATTTTCATGCGCAAGAGAAGATTTCATTACC 805 |||||||||||||||||||||||||| ||||| | ||| || ||||||||| ||||||| Sbjct 563 AAGACTCCATTTTGAAGCCAAGAAAGTGGATTATAATGAGCCAGAGAAGATCCCATTACC 622 Query 806 TATTCAAAGGTCCGATATCGCCATGAACCTCGAGAGAAAGCTCTCTCTGCTTACATGGGA 865 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 623 TATTCAAAGGTCCGATATCGCCATGAACCTCGAGAGAAAGCTCTCTCTGCTTACATGGGA 682 Query 866 CGCAATACCAAACCAACTCTCTACCAAGAACAACAATCACAACAATAATGGTAATAACTC 925 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 683 CGCAATACCAAACCAACTCTCTACCAAGAACAACAATCACAACAAT---GGTAATAACTC 739 Query 926 TTCAATGAGTAGCAACACGCAAGAGGAAGAGACAGCAAGTGTAGCAAGTTCTGATTTGTT 985 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 740 TTCAATGAGCAGCAACACGCAAGAGGAAGAGACAGCAAGTGTAGCGAGTTCTGATTTGTT 799 Query 986 CGAGATTGAGAACATAACGAGCAGTGTCTATGAGCCGAGTGAGGCCAGCATTGGATGGAG 1045 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 800 CGAGATTGAGAACATAACGAGCAGTGTCTATGAGCCAAGTGAGGCCAGCATTGGATGGAG 859 Query 1046 TGTGGTAACGGGAAGTATGGCAGATCAATCGGTGATTTCGGATTTCGATATGATGAAGAG 1105 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 860 TGTGGTAACGGGAAGTATGGCAGATCAATCGGTGATTTCGGATTTCGATATGACGAAGAG 919 Query 1106 GGTCACGAGAAATGGTCCGGTGGTTAAAACCAAACCGGTGATTGGTGAGAAAGTCCGGTC 1165 ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 920 GGTCACGAGAAGTGGTCCGGCGGTTAGAACCAAACCGGTGATTGGTGAGAAAGTCCGGTC 979 Query 1166 GGCTGGGTTTTTGTCGGGTTGTAAGAGTCACAAAGCTGTCTCGGTTGTTGATAGTTCTAG 1225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 980 GGCTGGGTTTTTGTCGGGTTGTAAGAGTCACAAAGCTGTCTCGGTTGTTGATAGTTCTAG 1039 Query 1226 AAAAGTGAAAGAAACAGCCAAGGTTGATCATCACGAGATGTCTCATCAGAAGAAGTTTAA 1285 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1040 AAAAGCGAAAGAAACAGCCAAGGTTGATCATCACGAGATGTCTCATCAGAAGAAGTTTAA 1099 Query 1286 AACTGAGATTAGGATTCAAGACTTGAGCTTTCTTTAATAAACAATGTTTGTGTATGT 1342 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1100 AACTGAGATTAGGATTCAAGACTTGAGCTTTCTTTAATAAACAATGTTTGTGTGTGT 1156 Score = 401 bits (217), Expect = 6e-111 Identities = 254/271 (94%), Gaps = 5/271 (2%) Strand=Plus/Plus Query 140 TATATACACATACAA-AGAGATGGATGCTGAAAAGAAGAGTGCCCATTTTCGCCAAATCT 198 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TATATACACATACAATAGAGATGGATGCTGAAAAGAAGAGTGCTCATTTTCGCCAAATCT 60 Query 199 CATCTTATAAACCACAATTACTTGTCCTCTCCTCAATCCAAGAA-AACCCTTCTTCAAAA 257 || |||||||||||||| |||||||||||||||| ||||||||| || |||||||||||| Sbjct 61 CAACTTATAAACCACAACTACTTGTCCTCTCCTCGATCCAAGAACAA-CCTTCTTCAAAA 119 Query 258 ATCTCAGAAAAAGCCAATATCAAAGCTGACAATGACGCCGAGATTGGAGTTTTCGGAGCA 317 |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 120 ATCTCAGACAAACCCAATATCAAAGCTGATAATGACGCCGAGATTGGAGTTTTCGGAGCA 179 Query 318 GAAAAGTACTTCAGCATGAAGCTAGATCATGTTGATTCCACGGCGGATATCACCAAGCAA 377 ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 180 GAAAAATACTTCAGCATGAAGCTAGATCCTGTTGATTCCTCGGCGGATATCACCAAGCAA 239 Query 378 CATGAAAAGGAAAACACACATG-atcatcct 407 || |||||||||||||||| || ||| |||| Sbjct 240 CACGAAAAGGAAAACACAC-TGGATCGTCCT 269 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53669155205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5