BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19000.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472123 jgi|Araly1|472123|fgenesh2_kg.1__2077__AT1G19000.2 1471 0.0
Ahg476620 jgi|Araly1|476620|fgenesh2_kg.2__1750__AT1G74840.1 250 2e-65
> Ahg472123 jgi|Araly1|472123|fgenesh2_kg.1__2077__AT1G19000.2
Length=1467
Score = 1471 bits (796), Expect = 0.0
Identities = 925/987 (94%), Gaps = 10/987 (1%)
Strand=Plus/Plus
Query 1 AGATCCACTCACACCTCGTCTCCTAATCTGTACGGTTCTTATTTCGAAAGGGTAAAAACC 60
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1 AGATCCACTCACACCTCGTCTCCTTATTTGTACGGTTCTTATTTCGAAAGGGTAAAAACC 60
Query 61 AAAAGCGACGCAAAGGGCAAAATCGGAAAAAGTGTTTTATTTATGGCCGCCGTTAGTAGT 120
|||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 61 AAAAGCGACGCAAAGGGCAAAATCGGAAAAAGTG-TTAATTTATGGCCGCCGTAAGTAGC 119
Query 121 TCGTCGGAGACCGGAGACTGCGGCGTTA-CGGGAAAGAGAGATGAGATCATGTTGTTCGG 179
|||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||
Sbjct 120 TCGTCGGAGACCGGAGACTGTGGCGCAACCGGG-AAGAGAGATGAGATCATGTTGTTCGG 178
Query 180 AGTTAGAGTCGTGGTTGATCCGATGAGAAAGTGTGTGAGTTTGAACAATCTCTCTGATTA 239
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGTTAGAGTTGTTGTTGATCCGATGAGAAAGTGTGTGAGTTTGAACAATCTCTCTGATTA 238
Query 240 TGAAAAGTCTTCTCCGGAGGATGAGATCCCTAAGATAGTCACCGCCGGAGCTGGAGATGG 299
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 239 TGAAAAGTCTTCGCCGGAAGATGAGATCCCTAAGATAGTTGTCGCCGGAGCTGGAGATGG 298
Query 300 TGAAGATAAGAACGAAACGGATGCGACGGTGATTGTCGCTGACGGTTACGCCTCCGCCAA 359
|||||||||||||||| | ||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 299 TGAAGATAAGAACGAAGCTGATGCGAAGGTGATTTTCGCCGACGGTTACGCCTCCGCCAA 358
Query 360 TGACGCTGTCCAGATTTCGTCTTCTTCCGGCGGGAGGAAACGAGGGGTTCCATGGACAGA 419
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 TGACGCTGTCCAGATTTCGTCTTCTTCCGGCGGGAGGAAACGAGGGATTCCATGGACAGA 418
Query 420 GAACGAGCATAAGAGGTTCTTGATTGGGTTGCAGAAAGTAGGAAAAGGAGATTGGAAAGG 479
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 GAATGAGCACAAGAGGTTCTTGATTGGGTTACAGAAAGTAGGAAAAGGAGATTGGAAAGG 478
Query 480 AATATCAAGAAACTTTGTGAAGAGTAGGACTCCTACTCAAGTAGCTAGTCATGCTCAGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 AATATCAAGAAACTTTGTGAAGAGTAGGACTCCTACTCAAGTAGCTAGTCACGCTCAGAA 538
Query 540 ATACTTCCTCCGACGAACCAACCTCAACCGTCGCCGAAGAAGATCTAGCCTTTTTGATAT 599
||||||||||||||||||||||||||| ||||| | |||||||||||||||| |||||
Sbjct 539 ATACTTCCTCCGACGAACCAACCTCAATCGTCGTAGGCGAAGATCTAGCCTTTTCGATAT 598
Query 600 CACTACTGAGACGGTTACAGAAATGGCCATGGAGCAAGATCCTACTCAGGAGAACTCACC 659
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 CACTACTGAGACGGTCACAGAAATGCCCATGGAGCAAGATCCTACTCAGGAGAACTCACC 658
Query 660 ACTACCTGAAACCAACATCAGCTCTGGACAGCAAGCGATGCAAGTTTTTACTGA-----C 714
|| |||||||||||||| |||||||||||| |||| |||||||||||| |||| |
Sbjct 659 ACCACCTGAAACCAACACCAGCTCTGGACATCAAGTTATGCAAGTTTTTCCTGAAGTTGC 718
Query 715 -GTGCCGACAAAAACTGAGAATGCACCAGAGACATTTCATCTCAACGATCCATATCTGGT 773
||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 719 AGTGCCGACAAAAACTGAGAATGCACCACAGACATTTCATATCAATGATCCATATCTGGT 778
Query 774 TCCAGTAACCTTCCAAGCAAAGCCAACATTCAATCTAAACACAGATGCTGCTCCACTTTC 833
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 CCCAGTAACCTTCCAAGCAAAGCCTGCATTCAATCTAAACACAGATGCTGCTCCACTTTC 838
Query 834 TCTCAACCTTTGTCTGGCATCCTCATTTAATCTTAACGAGCAACCCAACTCAAGACACTC 893
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCTCAACCTTTCTCTGGCCTCCTCATTTAATCTTAACGAGCAACCCAACTCAAGACACTC 898
Query 894 GGCTTTCACGATGATGCCAAGCTTCAGCGATGGAGATAGCAATAGCAGCATCATCAGAGT 953
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGCTTTCGCGATGATGCCAAGCTTCAGCGATGGAGATAGCAATAGCAGCATCATCAGAGT 958
Query 954 TGCTTAGAGCTTAAAC-CCAAGGGGaa 979
|||||||| |||||| |||||| |||
Sbjct 959 TGCTTAGACCTTAAAATCCAAGGTGAA 985
Score = 359 bits (194), Expect = 3e-98
Identities = 239/258 (93%), Gaps = 13/258 (5%)
Strand=Plus/Plus
Query 980 aaaaaaaaCAGAACAAAAACAGAGGAAGGCTATAGAGATTGATGGACAAACTGTGTCTAG 1039
|||||||| ||||||| |||||||||||||||| ||| |||||||||||| ||| |||
Sbjct 1174 AAAAAAAA-AGAACAATAACAGAGGAAGGCTAT--AGA--GATGGACAAACTATGTTTAG 1228
Query 1040 GGTGCTTCATCATCT-TTGTTTGTTTGTAAAACTCT-T-GTCACACACACTGTTATGAGT 1096
||| ||||||||||| |||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1229 GGTTCTTCATCATCTGTTGTTTGTTTGTAAAACTCTCTGGCCACACACACTGTTATGAGT 1288
Query 1097 CATTTTCTGCTGTGTGTGTTTTGTTTTGTGGTGATGTAAGTTAAAAACAAG-CGTGATTC 1155
|||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1289 CATTTTCTTCTGTGTGTGTTTTGTTTTGTGGT-ATGTAAGTTAAAAACAAGTCGTGATTC 1347
Query 1156 TCATGTGGCCCATCTCAATCAATGGTTGGTGATTTGTGGGGTTTTTAGGCTTTTCTATTA 1215
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1348 TCATGTGGCCCATCTCAATCAATGGTTGGTGATTTGTGGGGTTTTTAGGCTTTT--AT-A 1404
Query 1216 TCTTATCTTTTGGGGATA 1233
||||||||||||||||||
Sbjct 1405 TCTTATCTTTTGGGGATA 1422
> Ahg476620 jgi|Araly1|476620|fgenesh2_kg.2__1750__AT1G74840.1
Length=1143
Score = 250 bits (135), Expect = 2e-65
Identities = 237/284 (83%), Gaps = 16/284 (6%)
Strand=Plus/Plus
Query 342 CGGTTACGCCTCCGCCAATGACGCT-GTCCAGATTTCGTC-T-T--C-TT--CCGGCGGG 393
|||||||||||| || |||| ||| ||| |||||| || | | | || || ||| |
Sbjct 276 CGGTTACGCCTCGGCGGATGAAGCTCTTCC-GATTTCTTCTTCTAACGTTAACC-GCGAG 333
Query 394 AGGAAACGAGGGGTTCCATGGACAG-AGAACGAGCATAAGAGGTTCTTGA-TTGGGTTGC 451
|| |||||||| ||||||||||| | |||| || || ||| |||||| | ||||| |||
Sbjct 334 AGAAAACGAGGAGTTCCATGGACTGAAGAA-GAACACAAGCTGTTCTT-ACTTGGGCTGC 391
Query 452 AGAAAGTAGGAAAAGGAGATTGGAAAGGAATATCAAGAAACTTTGTGAAGAGTAGGA-CT 510
||| |||||| ||||||||||||||||||||||| ||||||||||| ||||| |||| ||
Sbjct 392 AGAGAGTAGGTAAAGGAGATTGGAAAGGAATATCCAGAAACTTTGTCAAGAGCAGGACCT 451
Query 511 CCTACTCAAGTAGCTAGTCATGCTCAGAAATACTTCCTCCGACGAACCAACCTCAACCGT 570
|||| ||||| ||||||||||||||||||||||||||||| |||| ||| || ||||||
Sbjct 452 -CTACACAAGTTGCTAGTCATGCTCAGAAATACTTCCTCCGGCGAAGCAATCTTAACCGT 510
Query 571 CGCCGAAGAAGATCTAGCCTTTTTGATATCACTACTGAGACGGT 614
||||| ||||||||||||||||||| || |||||||| |||||
Sbjct 511 CGCCGCCGAAGATCTAGCCTTTTTGACATGACTACTGATACGGT 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5