BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19050.1 Length=807 Score E Sequences producing significant alignments: (Bits) Value Ahg920848 jgi|Araly1|920848|scaffold_102129.1 963 0.0 > Ahg920848 jgi|Araly1|920848|scaffold_102129.1 Length=678 Score = 963 bits (521), Expect = 0.0 Identities = 627/677 (93%), Gaps = 11/677 (2%) Strand=Plus/Plus Query 71 TCTGCTCTCTTTTTTATTCTGAGTTTGACAATGGCGGTTGGTGAGGTCATGAGGATGGAG 130 ||| ||||| ||||| |||||| |||||||||||||| |||||||| |||||||||||| Sbjct 1 TCTTCTCTC-TTTTTCTTCTGA-CTTGACAATGGCGGTCGGTGAGGTTATGAGGATGGAG 58 Query 131 ATTCCCGCCGGTGGAGATTTGACTGTTACTACTCCGGAGTTGCATGTTCTTGCCGTCGAT 190 ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 59 ATTCCTGCCGGTGGAGAGTTGACAGTTACTACTCCGGAGTTGCATGTTCTTGCCGTCGAC 118 Query 191 GATAGTATTGTGGATCGTAAAGTCATCGAGAGGTTGCTTAGAATCTCTTCTTGTAAAGTG 250 |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 119 GATAGTATCGTGGATCGTAAAGTTATCGAGAGGTTGCTTCGAATCTCTTCTTGTAAAGTG 178 Query 251 ACGACTGTAGAGAGTGGAACTAGGGCTTTGCAGTATCTTGGCTTAGATGGAGGCAAAGGG 310 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 179 ACGACTGTAGAGAGTGGGACTAGGGCTTTGCAGTATCTTGGCTTAGATGGAGGCAAAGGA 238 Query 311 GCTTCTAATCTTAAGGATTTGAAGGTGAATTTGATAGTGACGGATTACTCAATGCCAGGA 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GCTTCTAATCTTAAGGATTTGAAGGTGAATTTGATAGTGACGGATTACTCAATGCCAGGA 298 Query 371 CTTTCAGGATATGATCTCCTTAAAAAGATTAAGGAATCTTCAGCATTCAGAGAAGTACCA 430 || |||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 299 CTAACAGGATATGATCTCCTCAAGAAGATTAAGGAATCTTCAGCATTCAGAGAAGTACCA 358 Query 431 GTAGTGATTATGTCATCTGAGAACATCTTACCTCGTATACAAGAATGTCTCAAAGAAGGA 490 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 359 GTAGTGATTATGTCATCTGAGAACATCTTACCTCGTATAGAAGAATGTCTCAAGGAAGGA 418 Query 491 GCAGAGGAATTCTTGTTGAAACCGGTGAAGCTAGCAGATGTAAAGCGAATCAAACAACTT 550 |||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 419 GCAGAGGAATTCCTGTTGAAACCAGTGAAGCTAGCAGATGTTAAGCGAATAAAACAACTT 478 Query 551 ATAATGAGGAATGAAGCTGAGGAATGCAAAATCTTAAGCCATTCTAACAAGAGAAAGCTT 610 ||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 479 ATATTGAGAAATGAAGCTGAGGAATGCAAAACCTTAAGCCATTCTAACAAGAGAAAGCTT 538 Query 611 CAAGAAGACAGTGATACATCATCATCA--A-------GTCATGATGATACTTCTATCAAG 661 ||||||||| ||||||||||||||||| | ||||||||||| ||||| ||||| Sbjct 539 CAAGAAGACTGTGATACATCATCATCATCATCATCAAGTCATGATGATTCTTCTGTCAAG 598 Query 662 GACTCTTCATGTTCAAAACGAATGAAATCAGAATCTGAAAACCTTTTTTCTCTACTTTGA 721 ||| || ||| ||| ||||| ||||||||||||||||||||||||| ||||||| ||||| Sbjct 599 GACACTCCATCTTCTAAACGGATGAAATCAGAATCTGAAAACCTTTCTTCTCTATTTTGA 658 Query 722 ATTATATGTATAGAGGC 738 | ||||| ||||||||| Sbjct 659 AATATATATATAGAGGC 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29812121094 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5