BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19080.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485976 jgi|Araly1|485976|fgenesh2_kg.5__1968__AT1G19080.1 1195 0.0
> Ahg485976 jgi|Araly1|485976|fgenesh2_kg.5__1968__AT1G19080.1
Length=796
Score = 1195 bits (647), Expect = 0.0
Identities = 725/762 (95%), Gaps = 7/762 (1%)
Strand=Plus/Plus
Query 114 GACCGCGAATTTAATCTCAAGGTTAAGGTGGTGTGGAATCAGCCTTAGGGGATGGCGAAG 173
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1 GACCGCGAATTTAATCTCAAGGGTAAGGTGGTGTGGAGCCAGCCTTAGGGGATGGCCAAG 60
Query 174 TACTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTATTCCATAAA 233
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TATTTTGACATTGATGACATACTTATAGAGGAAGAGTTTGTACCGGTTTTGTTCCATAAA 120
Query 234 ACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCT 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGCTGAACAAGGCTCT 180
Query 294 AAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCATCT-GAGGCAAGCTGTTACCAT 352
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 181 AAAGTTGAACTTCCCTTCTGGCTTGCTCATGAGTTGCA-CTTGAGACAAGCTGTTACCAT 239
Query 353 AAACCTTCCTCCCTGTTTTGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCTGCATA 412
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 AAACCTTCCTCCCTGCTTCGACCAAAAGACGAGGCTTGAAGTTCAGGCTGATGCAGCATA 299
Query 413 CGTCGATCTTAGATCGCGATGTCCATACTTTTATGAATTTGGATGCAAGATAGAGCCACT 472
||||||||||||||| || ||||| || ||||||||||| ||||||||| ||||||||||
Sbjct 300 CGTCGATCTTAGATCTCGCTGTCCTTATTTTTATGAATTCGGATGCAAGTTAGAGCCACT 359
Query 473 GGTCACAGATAGAACACTGGGGATCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGA 532
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGTTACAGATAGAACACTTGGGATCTTGCTATCGACTGCGTTTAAGATCAGATACAAAGA 419
Query 533 GGCACTGACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTT 592
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGCACTAACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTT 479
Query 593 AACAAAAGAAGAAACAAACTTGTATGAAGCAGCTCACTTGTCGATGACAGCCTTCAAGAA 652
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 GACAAAAGAAGAAACAAACTTGTATGAAGCAGCACACTTGTCGATGACAGCCTTCAAGAA 539
Query 653 GTGGAGAACAGGTGGTCCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGA 712
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTGGAGAACAGGTGGACCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGA 599
Query 713 TTCTAATTAAGTTCCCTAAAACTCTTTATCCTCATCCTTACCAAGAGGGTGATTGTGTTA 772
|||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 600 TTCTGATTAAGTACCCTAAAACTCTTTATCCTCATCCTTACCAATAGGGTGGTTGTGTTA 659
Query 773 TATTAGTTATAACATGTCAAAATGATGCAATGGCAACA--T---ATTATGGTCTGAATCA 827
| | |||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 660 TGTAAGTTATAACATGTCAAAATGATGCAACGGCAACACATTTGATTATGGTCTGAATCA 719
Query 828 AATTGCAAATCCTTTTGTGTTATGTTCTCTTCAGTAAACTCA 869
||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 AATTGCAAATCCTTTTGTGTTATGTTCTCTTTAGTAAACTCA 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5