BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19090.1 Length=2109 Score E Sequences producing significant alignments: (Bits) Value Ahg472129 jgi|Araly1|472129|fgenesh2_kg.1__2083__AT1G19090.1 3271 0.0 > Ahg472129 jgi|Araly1|472129|fgenesh2_kg.1__2083__AT1G19090.1 Length=2113 Score = 3271 bits (1771), Expect = 0.0 Identities = 2007/2120 (95%), Gaps = 19/2120 (1%) Strand=Plus/Plus Query 2 AGAAACAGAGGATTCATCGATGTTATACTCTATCAAAAATTGCAGATTTGCATATGGAAA 61 |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| || Sbjct 1 AGAAACTGAGGATTCATAGATGTTATACTCTATCAAAAATCGCAGATTTGCATATGG-AA 59 Query 62 GA---CTTCTTC--T-TCACGATTCATGATCACACGTCGTCCGATTTCTGATGCAAATTT 115 || ||||||| | ||||||||||||||||| || |||| |||||||||||||||||| Sbjct 60 GACTTCTTCTTCTTTGTCACGATTCATGATCACGCGCCGTCGGATTTCTGATGCAAATTT 119 Query 116 GTGCTTCGATCGCTCAATTCCTCGCTTGGGTTTCATTCCTTGTACTATTAGCGACGGTGG 175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GTGCTTCGATCGCTCAATTCCTCGCTTGGGTTTCATTCCTTGTACTATTAGCGACGGTGG 179 Query 176 GCTCTTCTTCTTCTTCGGAATCTCTCCTAAATTGTCAACCTTTAGATCACCACCTTGTAA 235 ||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||||||| Sbjct 180 GCTCTTCTTCTTCTTCGAAATCTCTCCTCAATTGTCATCCTTTAGATCAACACCTTGTAA 239 Query 236 ACCCTAGTCGTCTGCTTGGTTTCCTCAGAGCAATGTCTTCCGTCAATGATTTCATAACC- 294 |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||| Sbjct 240 ACCCTAGTCGTCAGCTTGATTTCCTCAGAGCAATGTCTTCCGTCAATGATTACATTACCG 299 Query 295 AACGACAAGCTTTGGGTCGTTTCTTCCATCACCGATGTATCTCCACCTATCTATGTGTTT 354 || |||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 300 AA-GACAAGCTCTGGGTCGTTTCTTCCATCACCGATCTATCTCCACCCATCTATGTGTTT 358 Query 355 CTACAGTGCAGAGAAGATCTCTCTGTTTCCGATTGTCGACATTGCTTCAACGAGAGCAGA 414 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CTACAGTGCCGCGAAGATCTCTCTGTTTCCGATTGTCGACATTGCTTCAACGAGAGCAGA 418 Query 415 TTGGAGCTCGAGAGAAAATGTTCGGGTTCCGGTGGTCGAATCCATAGTGATAGATGCTTC 474 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 419 TTGGAGCTCGAGAGAAAATGTTCGGGTTCCGGTGGTCGAATTCATAGTGATGGATGCTTC 478 Query 475 TTACGGTTTGATGATCGAGATTTCTCTGAGGAATTTGTTGATCCTACATTTGATAAAGCT 534 |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||| Sbjct 479 TTACGGTTTGATGATCGAGATTTCTCAGAGGAGTTTGTTGATCCTAGATTTGATAGAGCC 538 Query 535 AACTGTGAGGAAACAGGGACAGGGTTTGGAGAATTTTGGAGATTTCTTGATGAGGCTTTG 594 || ||||||||||||| | ||||||||||||| ||||||| || |||||||||||||||| Sbjct 539 AAATGTGAGGAAACAGAGCCAGGGTTTGGAGATTTTTGGAAATATCTTGATGAGGCTTTG 598 Query 595 GTGAATGTAACTTTAAAGGCTGTTAAAAATGGAGGGTTTGGTGCAGCTTCAGTGATTAAA 654 ||||||||||| |||||||||||||||||||||||||||||||||||| | |||| || | Sbjct 599 GTGAATGTAACCTTAAAGGCTGTTAAAAATGGAGGGTTTGGTGCAGCTGCTGTGACTAGA 658 Query 655 ACCGAGGCCGTGTATGCATTGGCTCAGTGTTGGCAAACACTTGATGAGAACACGTGTCGA 714 ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 659 GCCGAGGCGGTGTATGCATTGGCTCAGTGTTGGCAAACACTTGATGAGAACTCGTGTCGA 718 Query 715 GAGTGTTTGGTTAATGCTAGATCGAGCTTGAGAGCTTGTGATGGACATGAAGCTAGAGCt 774 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 719 GAGTGTTTGGTTAATGCTAGATCGAGCTTGAGAGCTTGTGGTGGACATGAGGCTAGCGCT 778 Query 775 ttttttACTGGGTGTTACTTGAAGTATTCTACACACAAGTTCTTTGATGATGCTGCAGAA 834 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 TTCTTTACAGGGTGTTACTTGAAGTATTCTACACACAAGTTCTTTGATGATGCTGCAGAA 838 Query 835 CATAAACCTGACGCTGATCAGAGAAACTTTATAAGGTCATCGTTTTTTCCACATTTGAGT 894 ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 839 CATAAACCTGACGATGATCAGAGAAACTTTATAAGGTCATCGCTTTTTCCACATTTGAGT 898 Query 895 GATCGTGATGTTACGAGATTAGCAATTGCTGCGATTTCGTTGTCGATTCTTACTTCTCTT 954 |||| |||| |||||| ||||||||| ||||||||||||||||| |||||||||||||| Sbjct 899 GATCATGATATTACGAAATTAGCAATAGCTGCGATTTCGTTGTCTTTTCTTACTTCTCTT 958 Query 955 GGAGCCTTTATCAGTTACAGACGGGTTTCAAGGAAAAGAAAAGCTCAAGTTCCATCGTGT 1014 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 GGTGCCTTTATCAGTTACAGACGGGTTTCAAGGAAAAGAAAAGCTCAAGTTCCATCGTGT 1018 Query 1015 GT-AAATTTCAAATACGAGATGCTTGAGAAAGCGACCGAGTCTTTCCATGACTCTATGAA 1073 | ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| Sbjct 1019 -TCAAATTTCAAATACGAGACGCTTGAGAAGGCGACCGAGTCTTTCCATGACTCTTTGAA 1077 Query 1074 ACTAGGCCAAGGAGGGGCCGTCAAAAAGCTCTTCTTTAACACACGTGAATGGGCAGATCA 1133 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1078 ACTAGGCCAAGGAGGGGCCGTCAAAAAGCTCTTCTTCAACACACGTGAATGGGCGGATCA 1137 Query 1134 ATTCTTCAACGAAGTGAATCTGATCAGCGGAGTTCAACACAAGAACCTTGTGAGACTACT 1193 |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1138 GTTCTTCAACGAAGTGAATTTGATCAGCAGAGTTCAACACAAGAACCTTGTGAGACTACT 1197 Query 1194 TGGTTGCAGCATTGAAGGTCCCAAAAGTCTTCTTGTCTATGAATATGTTCATAACAGAAG 1253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1198 TGGTTGCAGCATTGAAGGTCCCAAAAGTCTTCTTGTCTATGAATATGTTCATAATAGAAG 1257 Query 1254 CCTTGATCAAATCCTTTTCATGAAGAACACAGTCCATATTTTGAGCTGGAAGCAACGGTT 1313 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1258 CCTTGATCAAATCCTTTTCATGAAGAATACAGTCCATATTTTGAGCTGGAAGCAACGGTT 1317 Query 1314 TAACATCATTATAGGAATATCAGAAGGTCTAGAATACCTTCACAGAGGATCTGAAGTAAA 1373 |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 1318 TAACATCATTATAGGAATTTCAGAAGGTCTAGAATACCTTCACGGAGGATCTGAAGTAAA 1377 Query 1374 AATCATCCATAGAGACATCAAAACCAGCAATATTCTCCTTGATCGAAACCTAAGTCCCAA 1433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 AATCATCCATAGAGACATCAAAACCAGCAATATTCTCCTTGATCGAAACCTAAGTCCCAA 1437 Query 1434 AATAGCTGATTTTGGACTCATACGTTCCATGGGCACTGACAAAACGCAAACCAATACTGG 1493 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1438 AATAGCAGATTTTGGACTCATACGTTCAATGGGCACTGACAAAACGCAAACCAATACTGG 1497 Query 1494 AATTGCTGGAACACTTGGTTATCTGGCTCCTGAATATCTGATCAAAGGCCAATTAACAGA 1553 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 1498 AATTGCTGGAACACTTGGTTATTTGGCTCCTGAATATCTTATCAAAGGCCAATTAACAGA 1557 Query 1554 GAAAGCTGACGTTTACGCATTTGGAGTTCTTATCATCGAGATAG-TAACTGGCAAGAAAA 1612 ||||||||||||||||||||| ||||||||||| |||||||||| || |||| ||||||| Sbjct 1558 GAAAGCTGACGTTTACGCATTCGGAGTTCTTATAATCGAGATAGCTA-CTGGAAAGAAAA 1616 Query 1613 ATAACGCATTCACGCAAGGAACTAGCTCGGTTTTATACTCTGTATGGGAACATTTTAAAG 1672 | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1617 ACAACGCATTCACGCAAGGCACTAGCTCGGTTTTATACTCTGTATGGGAGCATTTTAAAG 1676 Query 1673 CAAACACTTTAGATCGCTCTATCGATCCTCGGTTGAAAGGGAGTTTCGT-AGAGGAAGAG 1731 ||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| Sbjct 1677 CAAGCACTTTAGATCGCTCGATCGATCCTCGGTTGAAAGGGAGTTTC-TCAGAGGAAGAG 1735 Query 1732 GCCTTGAAGGTTCTTCAAATCGGATTGTTGTGTGTTCAATCTTCTGTAGAGTTGAGACCG 1791 |||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 1736 GCCTTGAAGGTTCTCCAAATCGGATTGTTGTGTGTTCAATCTTCAGTAGAATTAAGACCG 1795 Query 1792 TCAATGTCTGAGATAGTCTTCATGTTACAGAACAAAGATAGTAAATTTGAATATCCGAAA 1851 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 1796 TCAATGTCTGAGATAGTCTTCATGTTAAAGAACAAAGATAGTAAATTTGAATGTCCGAAA 1855 Query 1852 CAGCCTCCGTTCTTGAGTGCCAGTGTTCTAATGCCAGATGAGGAGACTAGAGTCTGATAT 1911 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1856 CAGCCTCCGTTCTTGAGTGCCAGTGTTCTAATGCCAGATGAGGAGACTAAAGTCTGATAT 1915 Query 1912 TATCAGTTTCTTAGGATTGT-TAATGTTCTTCTGTAAATGCTCAAAAATGGATTTTACAC 1970 |||||||||||||||||| | || |||||||||||||||||||||| | ||||||||||| Sbjct 1916 TATCAGTTTCTTAGGATT-TATATTGTTCTTCTGTAAATGCTCAAAGAGGGATTTTACAC 1974 Query 1971 CATTTCTTTCTCCTTTTCAAATCTTTTATC-GTTCATATTTTATTATGAAGGTCAACAAA 2029 || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1975 CACT-CTTTCTCCTTTTCAAATCTTTTATCTGTTCATATTTTATTATGAAGGTCAACAAA 2033 Query 2030 AATGGAACCAAGGCTAGATTCTAAAAGTTTTGATTCGTTTACATCATTATTCATTTTACA 2089 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 2034 AATGGAACCAAGGCTAGATTCTAAAAGTTTTGATTCGCTTACATCATTATTCTTTTTACA 2093 Query 2090 ATCTAAATCATGTGAGTTAT 2109 ||||||| ||| ||||||| Sbjct 2094 ATCTAAAAGATGCGAGTTAT 2113 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79341980335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5