BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19150.1 Length=1043 Score E Sequences producing significant alignments: (Bits) Value Ahg472139 jgi|Araly1|472139|fgenesh2_kg.1__2093__AT1G19150.1 1491 0.0 > Ahg472139 jgi|Araly1|472139|fgenesh2_kg.1__2093__AT1G19150.1 Length=1042 Score = 1491 bits (807), Expect = 0.0 Identities = 977/1055 (93%), Gaps = 28/1055 (3%) Strand=Plus/Plus Query 1 ACAATCAAAGATGACACTAGCTAGACATTTTCGTTTTCATCTCCCCACGAATCAAAGATG 60 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 1 ACAATCAAAGATGACACTAGCTAGACATTTTCATTTTCATCT-CCCACGAATCAAAGATG 59 Query 61 GCTTTTGCCATTGCTTCTGCTCTCACTTCCACACTCACATTATCCACGAGCAGAGTCCAA 120 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 60 GCTTTTGCCATTGCTTCTGCTCTCACTTCCACACTCACATTATCTACGAGCAGAGTCCAA 119 Query 121 AATC-CTACCCAGAGAAGACCACATGTAGCGTCCACATCATCCACCGGTGGAAGATTAAT 179 || | | ||||||||||||||||| ||||||||| ||||| |||| ||||||||| | | Sbjct 120 AA-CGCGACCCAGAGAAGACCACAAGTAGCGTCCGCATCACCCACTGGTGGAAGA--A-T 175 Query 180 GAGAGAGCGCTTGGTGGTGGTTCGTGCCGGCAAAGAAGTTTCTAGCGTCTGTGAACCACT 239 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 176 GAGTGAGCGCTTGGTGGTGGTTCGTGCCGGCAAAGAAGTTTCTAGCATCTGTGAACCACT 235 Query 240 TCCTCCGGACCGTCCTTTATGGTTCCCTGGTAGCTCTCCACCTGAATGGCTCGATGGCAG 299 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 236 TCCTCCGGACCGTCCTTTGTGGTTCCCTGGTAGCTCTCCACCTGAATGGCTCGATGGCAG 295 Query 300 CTTACCTGGTGATTTCGGTTTCGATCCTCTCGGTTTAGGGTCTGATCCGGACACCCTCAA 359 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 296 CTTACCTGGTGATTTTGGTTTCGATCCTCTCGGTTTAGGGTCTGACCCGGACACCCTCAA 355 Query 360 ATGGTTTGCACAAGCTGAGCTTATACATAGCCGGTGGGCAATGCTGGCCGTGACCGGTAT 419 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 356 ATGGTTTGCACAAGCTGAGCTCATACATAGCCGGTGGGCAATGCTGGCCGTGACAGGTAT 415 Query 420 CATAATACCAGAATGTCTCGAGCGGTTAGGTTTCATTGAAAATTTCTCATGGTATGACGC 479 | ||||||| |||||||| ||||||||||||||||| || |||||||||||||| ||||| Sbjct 416 CCTAATACCGGAATGTCTAGAGCGGTTAGGTTTCATCGAGAATTTCTCATGGTACGACGC 475 Query 480 AGGGTCTCGTGAGTACTTCGCGGATTCCACTACGCTGTTTGTGGCTCAAATGGTTTTAAT 539 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 476 AGGGTCTCGTGAGTACTTCGCGGATTCCACTACGTTGTTTGTGGCTCAAATGGTTTTAAT 535 Query 540 GGGCTGGGCAGAAGGTAGAAGATGGGCTGATTTGATTAAACCGGGGTCTGTTGACATAGA 599 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 536 GGGCTGGGCAGAGGGTAGAAGATGGGCTGATTTGATTAAACCGGGGTCTGTGGACATAGA 595 Query 600 ACCAAAGTACCCGCATAAAGTAAATCCTAAACCGGATGTTGGTTACCCTGGAGGTTTGTG 659 ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || Sbjct 596 ACCAAAGTACCCGCACAAAGTAAATCCTAAACCGGATGTTGGTTACCCGGGCGGTTTATG 655 Query 660 GTTCGATTTTATGATGTGGGGGAGAGGTTCTCCTGAACCGGTAATGGTTTTGAGGACTAA 719 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 656 GTTCGATTTTATGATGTGGGGTAGAGGTTCTCCTGAACCGGTAATGGTTTTGAGGACTAA 715 Query 720 AGAGATTAAGAACGGACGGCTCGCGATGCTTGCTTTCCTTGGGTTCTGTTTCCAAGCTAC 779 ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 716 AGAGATTAAAAACGGACGGCTCGCGATGCTTGCTTTCGTTGGGTTTTGTTTCCAAGCTAA 775 Query 780 CTACACTAGCCAAGATCCAATTGAGAATCTCATGGCTCATCTGGCTGATCCTGGTCATTG 839 ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 776 CTACACTAGTCAAGATCCAATTGAAAATCTCATGGCTCATCTTGCTGATCCTGGTCATTG 835 Query 840 CAACGTCTTTTCGGCATTTACATCACATTAATGAGGATTAGCTTGGGGCGAATAT-AATA 898 ||||||||| |||||||||||||||||||||||||||||||| || ||| || || ||| Sbjct 836 CAACGTCTTCTCGGCATTTACATCACATTAATGAGGATTAGCCTGCGGCAAA-ATTAAT- 893 Query 899 TTTTTTATA--TAT--T---T-ATGGATGTTGAACTTTTGTATA--GTGTCACTCGCCGT 948 ||||||||| ||| | | |||||||||||||||||||||| | |||||||||||| Sbjct 894 TTTTTTATAAATATAATAGATCATGGATGTTGAACTTTTGTATATAGCGTCACTCGCCGT 953 Query 949 TGTTACAACTTC-TGCTTACTTAATTAAC-ATGTAAAATATATTTTATA-TATATGTAGA 1005 |||||||| ||| ||||||||||||||| | |||| || || || | |||||| | | Sbjct 954 TGTTACAA-TTCATGCTTACTTAATTAATTACGTAACATGTAAAATA-AGTATATG-A-A 1009 Query 1006 AGAAAGAAACAAGAAGAGAAAATGAGCATTATTAT 1040 || ||||||||| |||||||||||| ||||||| Sbjct 1010 C-AA-GAAACAAGACGAGAAAATGAGCTTTATTAT 1042 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38809129506 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5