BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19180.1 Length=1329 Score E Sequences producing significant alignments: (Bits) Value Ahg472142 jgi|Araly1|472142|fgenesh2_kg.1__2096__AT1G19180.2 804 0.0 > Ahg472142 jgi|Araly1|472142|fgenesh2_kg.1__2096__AT1G19180.2 Length=1089 Score = 804 bits (435), Expect = 0.0 Identities = 577/638 (90%), Gaps = 40/638 (6%) Strand=Plus/Plus Query 381 GGAAC-TTTAGGCAACTCACGTCAGCCGACAACAACCATGAGTTTATTCCCTTGTGAAGC 439 ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 454 GGAACGTTT-GGCAACTCACGTCAGCCGACAACAACGATGAGTTTATTCCCTTGTGAAGC 512 Query 440 TTCTAACATGGATTCCATGGT---------TCAAGATGTTAAACCGACGAATCTGTTTCC 490 ||| ||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 513 TTCAAACATGGATTCCATGGTAGCACCAGCTCAAGATGTTAAACCGACGAATTTGTTTCC 572 Query 491 TA-GGCAACCAAGCTTTTCTTCCTCATCTTCCTCTCTTCCAAAGGAAGATGTTTTGAAAA 549 | |||||| ||| ||||||||||||||||||||| ||| ||||||||||||| |||||| Sbjct 573 -ACGGCAACTAAGTTTTTCTTCCTCATCTTCCTCTGTTCTAAAGGAAGATGTTCTGAAAA 631 Query 550 TGACACAGACTACCAGATCTGTGAAACCAGAGTCTCAAACTGCACCATTGACTATATTCT 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632 TGACACAGACTACCAGATCTGTGAAACCAGAGTCTCAAACTGCACCATTGACTATATTCT 691 Query 610 ACGCCGGGCAAGTGATTGTATTCAATGACTTTTCTGCTGAGAAAGCCAAAGAAGTGATCA 669 ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| | Sbjct 692 ACGCCGGGCAAGTGATTGTATTCAATGACTTCTCTGCTGAAAAAGTCAAAGAAGTGATGA 751 Query 670 ACTTGGCGAGCAAAGGCACCGCTAATAGCTT-A--G----C-CA---A--G--AA-T--- 710 ||||||| ||||||||||||||||||||||| | | | || | | || | Sbjct 752 ACTTGGCTAGCAAAGGCACCGCTAATAGCTTCACCGGTTTCACATCTAATGTCAACTTAG 811 Query 711 C-AA-A--C---C-GATATCAGAAGCAACATCGCTACTATCGCAAACCAAGTTCCTCATC 762 | || | | | || |||||||||||||||||||||||| |||||||||||||||||| Sbjct 812 CCAAGAATCAAACCGAGATCAGAAGCAACATCGCTACTATCACAAACCAAGTTCCTCATC 871 Query 763 CAAGAAAAACCACAACACAAGAGCCAATCCAATCCTCCCCAACACCATTGACAGAACTTC 822 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 872 CAAGAAAAACCACAACACAAGAGCCAATCCAATCCTCCCCAACACCATTGACAGAACTTC 931 Query 823 CTATTGCTAGAAGAGCTTCACTTCACCGGTTCTTGGAGAAGAGAAAGGACAGAGTTACGT 882 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 932 CTATTGCTAGAAGAGCTTCACTTCACCGGTTCTTGGAGAAGAGAAAGGACAGGGTTACGT 991 Query 883 CAAAGGCACCATACCAATTATGCGATCCAGCCAAAGCGTCTTCAAACCCTCAAACCACAG 942 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 992 CAAAGGCACCATACCAGTTATGCGATCCAGCCAAAGCGTCTTCAAAGCCTCAAACCGCAG 1051 Query 943 GCAACATGTCGTGGCTCGGTTTAGCAGCTGAAATATGA 980 ||||||||||||||||||||| ||||||||||||||| Sbjct 1052 ACAACATGTCGTGGCTCGGTTTGGCAGCTGAAATATGA 1089 Score = 265 bits (143), Expect = 7e-70 Identities = 173/187 (93%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 196 TTTGAAAGTTTTAATTGTTAAAGATGTCGAGTTCTATGGAATGTTCTGAGTTCGTCGGTA 255 ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 106 TTTCAAAGTTTTATTTGTTAAAGATGTCGAGTTCTATGGAATGCTCTGAGTTCGTCGCTA 165 Query 256 GCCGGAGATTTACTGGGAAGAAGCCTAGCTTCTCACAGACGTGTAGTCGATTGAGTCAGT 315 | |||||||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct 166 GTCGGAGATTTACTGGGAAG---CCGAGCTTCTCACAAACGTGTAGTCGATTGAGTCAGT 222 Query 316 ATCTAAAAGAGAACGGTAGCTTTGGAGATCTGAGCTTAGGAATGGCATGCAAGCCTGATG 375 | || || |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 223 ACCTGAAGGAGAACGGTAGCTTTGGAGATCTGAGCTTAGGCATGGCATGCAAGCCTGATG 282 Query 376 TCAATGG 382 ||||||| Sbjct 283 TCAATGG 289 Score = 113 bits (61), Expect = 3e-24 Identities = 98/114 (86%), Gaps = 9/114 (8%) Strand=Plus/Plus Query 21 AACTCTGCAACCAAACCAACCAACCCCAAAGCCAAACAAAGTTTTATAGAGACCTTCCAT 80 ||||||||||||||||||| || || || || || |||| |||| ||||||| ||||| Sbjct 1 AACTCTGCAACCAAACCAA--AA--CC-AA-CCCAA-AAAGCTTTAAAGAGACCCTCCAT 53 Query 81 TTCTCCCTCTCGTGACAAACGCAATTTGCAGAGAAGCAACAGCAACAACAAGAA 134 |||| || ||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 54 TTCT-CC-CTCGTGACAAACGCAATTTGCAGAGAAGCAACAACATCAATAAGAA 105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49712283768 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5