BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19400.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472167 jgi|Araly1|472167|fgenesh2_kg.1__2121__AT1G19400.2 1736 0.0
Ahg476660 jgi|Araly1|476660|fgenesh2_kg.2__1790__AT1G75180.3 686 0.0
> Ahg472167 jgi|Araly1|472167|fgenesh2_kg.1__2121__AT1G19400.2
Length=1270
Score = 1736 bits (940), Expect = 0.0
Identities = 1090/1159 (94%), Gaps = 23/1159 (2%)
Strand=Plus/Plus
Query 522 GTTTTTGGAGTGAGAATTAAGTTTGGATTGTTGATTCTCTTCCTCTGGTCATGGAGGAGC 581
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 122 GTTTTTGGAGTGAGAATTAACTTTGGGTTGTTGATTCTCTTCCTCTGGTCATGGAGGAGC 181
Query 582 CTTGTGAGACACTTGACAGTGGTGAAGCCTATCAAATATCTAGATATCATAACTATAACC 641
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CTTGTGAGACACTTGACAATGGTGAAGCCTATCAAATATCTAGATATCATAACTATAACC 241
Query 642 AACACAGCTCCAGAAGCTCATCTCCCTGGTTGGATTTGAGAGTGTTCTATGTCCGGATAA 701
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 242 AACACAGCTCCAGAAGCTTATCACCCTGGTTGGATTTGAGAGTGTTCTATGTCCGGATAA 301
Query 702 GCAATTTCGTGGTGGAAGATTCAACTCCTGAGGTCCTCACTATCAATCACATTCCTCTGG 761
||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 302 GCAGTTTCATGGTGGAAGATTCAACTCCTGAAGTCCTCACTATCAATCACATTCCTCTGG 361
Query 762 ATCCAGATACGCTTTTGGAGATTAACGGTGTTAGAATGGGAATGTACTCAGAAGGAGGTT 821
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 362 ATCCAGATACGCTTTTGGAGATTAACGGTGTTAGGATGGGAATGTACTCAGAAGGAGGTT 421
Query 822 CTTCACAGCTTAGGAGAGATCGGGTTGATAAGAAATCTGAAGAAGCTACTTATGTCAGCA 881
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 422 CTTCACAGCTTAGGAGAGATCGGGTTGATAAGAAATGTGAAGAAGCTACTTATGTCAGCA 481
Query 882 CAGACAATATCAGGTTAACTGGTAGTGTGAAGTTTGAGGTTTATGACAAAAATGAGCTAG 941
| ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct 482 CTGACAATATCAGGTTAACGGGTAGTGTGAAGTTTGAGGTTTTTGACAAAACTGAGCTAG 541
Query 942 TTTTGTCTGGAACTCTTGAGATGTCTGGTAGTAATGGTTTCACTGGGGAATCAAAGAATC 1001
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 542 TCTTGTCTGGAACTCTTGAGATGTGTGGTAGTAATGGTTTCACTGGGGAATCAAAGAATC 601
Query 1002 GATGGAAAATGAATTGTGAGGCTGAGGTCACTGCAGGGTCTGGTTTCCTTAAGGAGAAGA 1061
||||||| |||||||| ||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 602 GATGGAAGATGAATTGCGAGGCTGAGATCAGTGCAGGGTCTGGTTTCTTTAAGGAGAAGA 661
Query 1062 GCATAAACGGTCAAGAGTTATCGTCTCCATTGCCAACTATCGAGGTCTATGTTACTGGTT 1121
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 662 GCATTAACGGTCAAGAGTTATCGTCCCCATTGCCAACTATCGAGGTCTATGTTACTGGTT 721
Query 1122 GCTTCTCAGGAACACCCATCATCTTAACCAAGACTCTGCAACTTGGTTTGAAAAAGAAGC 1181
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 722 GCTTCTCAGGAACACCCATCATCTTAACCAAGACTCTGCAACTTGGTTTGAGAAAGAAGC 781
Query 1182 AGAGTAGAAGAATGGCATTGGATGCAATTCCTGAGTATGAAACTGCAGAGCCTCAGAAAG 1241
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 782 AGAGTAGAAGAATGGCATTGGATTCAATTCCTGAGTATGAAACTGCAGAACCTCAGAAAG 841
Query 1242 A---CACCTCCTATGCACTTGATCTTCAGGCAACAACAGAGTACGGGAATTACAAAGAGG 1298
| |||||||| ||| |||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 842 AGTACACCTCCTCTGCGCTTGATCTTCAGGCAACA---GAGTACGCGAACTACAAAGAGG 898
Query 1299 AATACGAAGGAGACATGTATTGGAGAAGTGAGTGCATTGATGGGGAGATGTCATGGTTTA 1358
||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct 899 AATACGAAGGAGACATGTATTGGAGAAGTGAGTGCATAGATGGAGAGATGACATGGTTTA 958
Query 1359 ATGCAGGTGTAAGGGTTGGTGTTGGGATAGGACTTGGTGTCTGTGTTGGTCTTGGGATTG 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGCAGGTGTAAGGGTTGGTGTTGGGATAGGACTTGGTGTCTGTGTTGGTCTTGGGATTG 1018
Query 1419 GTGTCGGTCTTCTCGTTCGTACTTATCAATCAACTACCAGAACCTTCAGGAGGAGGCTTC 1478
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 GTGTCGGTCTTCTAGTTCGTACTTATCAATCAACAACCAGAACCTTCAGGAGGAGGCTTC 1078
Query 1479 TCTAGTTTAGTAATATATACATTTGCACCTCttttttttACCTTGCAATTTTGAAAGAAT 1538
||||||||||||||| | |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 1079 TCTAGTTTAGTAATACACACATTTGCACCT-TTTTTTT-ACCTTGAAATTTTGAAAGAAT 1136
Query 1539 TC-TCttttt-------tt-GTATTTGGGTGTGATGTGAATCAAACACTTTGGTGTGTGG 1589
| ||||||| || ||||||||||||||||||||| |||||| |||||||||||
Sbjct 1137 -CATCTTTTTAAAACCGTTTGTATTTGGGTGTGATGTGAATTAAACACATTGGTGTGTGG 1195
Query 1590 ATATGAT-GGTACTATTTGTTTTGCTGTAAATAAAGGAATGAGAGTGTAGTTTCTTTTGT 1648
||||| | |||| | || ||||||||||||||||| || ||||| ||||| || ||||||
Sbjct 1196 ATATGTTTGGTA-T-TT-GTTTTGCTGTAAATAAACGAGTGAGAATGTAGCTT-TTTTGT 1251
Query 1649 ATTCAGAATTTGGCTGATG 1667
||||||||||||||||||
Sbjct 1252 TTTCAGAATTTGGCTGATG 1270
Score = 128 bits (69), Expect = 1e-28
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 10 TACACTAGGAGACTCGACGAGTCAATTTTAACCAGATTTAGAGGATTTGTGGATGTGAtt 69
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TACACTACGAGACTCGACGAGTCAATTTTAACCAGATTTAGAGGATTTGTGGATGTGATT 60
Query 70 tcttcttttggt 81
||||||||||||
Sbjct 61 TCTTCTTTTGGT 72
> Ahg476660 jgi|Araly1|476660|fgenesh2_kg.2__1790__AT1G75180.3
Length=1670
Score = 686 bits (371), Expect = 0.0
Identities = 783/971 (81%), Gaps = 72/971 (7%)
Strand=Plus/Plus
Query 570 TCATGGAGGAGCCTTGTGAGACACTTGACAGTGGTGAAGCCTATCAAAT-ATCTAGATAT 628
|||||| |||||||| |||||||| | ||| |||||||| | || || ||| ||||||
Sbjct 455 TCATGGTGGAGCCTTATGAGACACGTAACAACGGTGAAGCTTCCCAGATGATC-AGATAT 513
Query 629 CATAACTATAACCAACACAGCTCCAGA--AGC-T---C---ATC-TC-CC--TGGTTGGA 675
|| | |||||||| |||| |||||| | | | | ||| || || | || ||
Sbjct 514 CAGAGTTATAACCATCACAATTCCAGATTACCATCACCATTATCATCGCCATTACTT-GA 572
Query 676 TTTGAGAGTGTTCTATGTCCGGATAAGCAATTTCGTGGTGGAAGATTCAACTCCTGAGGT 735
||||||||||||||||||| | || ||||||||| |||||| |||| || ||||||||
Sbjct 573 TTTGAGAGTGTTCTATGTCAGAATCAGCAATTTCAAGGTGGATCATTCGACACCTGAGGT 632
Query 736 CCTCACTATCAATCACATTCCTCTGGATCCAGATACGCTTTTGGAGATTAACGGTGTTAG 795
|||||| || | ||| |||||| ||||||||||| | ||| ||||||| || ||||||||
Sbjct 633 CCTCACCATTACTCATATTCCTTTGGATCCAGATTCACTTCTGGAGATAAATGGTGTTAG 692
Query 796 AATGGGAATGTACTCAGAAGGAGGTTCTTCACAGCTTAGGAGAGATCGGGTTGATAAGAA 855
|||| | |||||||| ||||||| |||||| ||||| ||| ||||||| |||||||||||
Sbjct 693 AATGAGCATGTACTCTGAAGGAGTTTCTTCTCAGCTAAGGCGAGATCGTGTTGATAAGAA 752
Query 856 ATCTGAAGAAGCTACTTATGTCAGCACAGACAATATCAGGTTAACTGGTAGTGTGAAGTT 915
||| |||| |||||||| | ||||||||||||||||||||||| ||||||| ||||||||
Sbjct 753 ATCCGAAGTAGCTACTTTTATCAGCACAGACAATATCAGGTTATCTGGTAGCGTGAAGTT 812
Query 916 TGAGGTTTATGACAAAAATGAGCTAGTTTTGTCTGGAACTCTTGAGATGTCTGGTAGTAA 975
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 813 TGAGGTTTATGACAAAGATGAGCTGGTTTTGTCTGGAACTCTTGAGATGTCTGGTAGTAA 872
Query 976 TGGTTTCACTGGGGAATCAAAGAAT--CG--A-----TGGAAAATGAATTGTGAGGCTGA 1026
|||||||||||| ||||| ||| || || | ||||| ||||||||||| |||||
Sbjct 873 TGGTTTCACTGGTGAATCTAAGCATAGCGTGAAGCGGTGGAACATGAATTGTGAAGCTGA 932
Query 1027 GGTCACTGCAGGGTCTGGTTTCCTT-AAGGAGAAGAGCATAAACG-G-T-CAAGAGTTAT 1082
| |||||||||||||||||||| || |||||||| | |||| | | | | |||||||
Sbjct 933 GATCACTGCAGGGTCTGGTTTC-TTGAAGGAGAA-A-CATATTGGTGGTTCG-GAGTTAT 988
Query 1083 CGTCTCCATTGCCAACTATCGAGGTCTATGTTACTGGTTGCTTCTCAGGAACACCCATCA 1142
| ||||||||||||||||| || |||||||| ||||| ||||| |||||||| |||||||
Sbjct 989 CATCTCCATTGCCAACTATTGAAGTCTATGTCACTGGCTGCTTTTCAGGAACTCCCATCA 1048
Query 1143 TCTTAACCAAGACTCTGCAACTTGGTTTGAAAAAGAAGCA-GAGTAGAA-GAATGGCATT 1200
|||||||||||||||| || |||||||| | ||||||||| | ||||| | || ||||
Sbjct 1049 TCTTAACCAAGACTCTTCAGCTTGGTTTCAGAAAGAAGCACG-GTAGAGTGGCTG-CATT 1106
Query 1201 GGATGCAATTCCTGAGTATGAAACTGCA-GAGCCTCAGAAAG-ACACCTCCTATGCA-CT 1257
||| | ||||| ||||||||| ||| | |||||||| |||| | || || | || | ||
Sbjct 1107 AGATTCGATTCCGGAGTATGAAGCTG-ATGAGCCTCATAAAGGAAAC-TCATCTG-AGCT 1163
Query 1258 TGATCT-TCAGGCAACAACAGAGTACGGGAA-TTACAAAGAGGAATACGAAGGAGA-CA- 1313
|||| | ||||| |||| | | || || || ||| ||| | ||||| |||||||| ||
Sbjct 1164 TGAT-TATCAGGTAACAG-A-A-TATGG-AAGTTATAAACAAGAATATGAAGGAGAACAC 1218
Query 1314 -------TGTATTGGAGA-AGTGAGT--GCA--T--TGATG--GG-GAGATGTCATGGTT 1356
||||||||| | || |||| ||| | ||| | || |||||||| |||||
Sbjct 1219 AGCGACATGTATTGGA-ATAGAGAGTACGCAGATGGTGAAGATGGTGAGATGTCGTGGTT 1277
Query 1357 TAATGCAGGTGTAAGGGTTGGTGTTGGGA-TAGGACTTGGTGTCTGTGTTGGTCTTGGGA 1415
|| || ||||| ||||||||||| |||| | || |||||||||||||| |||||||| |
Sbjct 1278 CAACGCCGGTGTGAGGGTTGGTGT-GGGAATTGGTCTTGGTGTCTGTGTAGGTCTTGGCA 1336
Query 1416 TTGGTGTCGGTCTTCTCGTTCGTACTTATCAATCAACTACCAGAACCTTCAGGAGGAGGC 1475
|||| || || ||||| || ||||| ||||||||||| ||||||| |||||| ||||||
Sbjct 1337 TTGGGGTTGGCCTTCTAGTGCGTACCTATCAATCAACCACCAGAAACTTCAGAAGGAGGA 1396
Query 1476 TTCTCTAGTTT 1486
|| ||||||||
Sbjct 1397 TTATCTAGTTT 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5