BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19450.1 Length=1953 Score E Sequences producing significant alignments: (Bits) Value Ahg472174 jgi|Araly1|472174|fgenesh2_kg.1__2128__AT1G19450.1 2765 0.0 Ahg926902 jgi|Araly1|926902|scaffold_202463.1 1519 0.0 > Ahg472174 jgi|Araly1|472174|fgenesh2_kg.1__2128__AT1G19450.1 Length=1896 Score = 2765 bits (1497), Expect = 0.0 Identities = 1806/1946 (93%), Gaps = 57/1946 (3%) Strand=Plus/Plus Query 1 GGAAAACTATGAAACAGTCTGCGTCTCTCCACGCAAAGGCTCAATTTTTACAAACCATGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 GGAAAACTATGAAACAGTCTGCGTCTCTCCACGCAAAGGCTCAATTTTTATAAACCATGA 60 Query 61 AGAATTCTTAAGCAAAACAAGTCTAACATCTTTTTGAATTCACCCA-AAACTCAAATCCT 119 |||||| || |||||| || || | | ||| || || | || | Sbjct 61 AGAATT-TT----TAAACAA-TC-AA-A-CAAAAAGAAGTC-GACATCTTTTTGAA-CAA 109 Query 120 ACCTCAAATTTCGTATTTTTCTTCTTCTGCATTTTCTAGTTTAGGATCGACATTTTTATC 179 |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 110 ACCTCAAATTTCGT-TTTTT-TTCTTCTGCATTTTCTAGTTTAGGATCAACATTTTTAT- 166 Query 180 CTCCGA-AAGATTC-G-TGCTTTTTTCTCTCTGTAGATTACGATTGTTTTGTAGATTTAA 236 ||| || ||| | | | | ||| | ||||||||||||||||||||||||||||| | Sbjct 167 CTCAGACCCTTTTCGGATTCGTCTTT-T-TCTGTAGATTACGATTGTTTTGTAGATTT-A 223 Query 237 GAAAAACAAAAAGATGAGTTTTAGGGATGATAATACGGAAGAGGGAAGAAATGATCTTCG 296 | | |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 224 G--CGATAAAAAGATGAGTTTTAGGGATG---ATACGGAAGAGGGAAGAAATGATCTTCG 278 Query 297 GCGACCGTTCTTACACACAGGAAGTTGGTATCGGATGGGTTCGAGACAATCTAGTATGTT 356 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 279 GCGACCGTTCTTACACACCGGAAGTTGGTATCGGATGGGTTCGAGACAATCTAGTATGTT 338 Query 357 GGAATCGTCTCAAGTTATTCGAGACAGCTCAATTTCTGTCTTAGCTTGTGTTTTGATTGT 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 339 GGAATCGTCTCAAGTTATTCGAGACAGCTCAATTTCTGTCTTAGCTTGTGTTTTGATTGT 398 Query 417 TGCTCTTGGTCCTATTCAATTCGGATTCACTTGTGGTTATTCCTCACCAACTCAAGCTGC 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 TGCTCTTGGTCCTATTCAATTCGGATTCACTTGTGGTTATTCCTCACCAACTCAAGCTGC 458 Query 477 CATTACTAAGGATCTTGGTTTAACTGTATCAGAGTACTCTGTGTTTGGGTCTCTATCCAA 536 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 459 CATTACTAAGGATCTTGGTTTAACTGTATCAGAGTACTCTGTCTTTGGGTCTCTATCCAA 518 Query 537 TGTGGGTGCTATGGTTGGAGCAATTGCGAGTGGTCAGATTGCTGAATACGTTGGACGGAA 596 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 519 TGTGGGTGCTATGGTTGGAGCAATTGCAAGTGGTCAGATTGCTGAATACATTGGACGGAA 578 Query 597 AGGGTCTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTCGATATCATTTGC 656 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 AGGGTCTTTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTCGATATCATTTGC 638 Query 657 AAAAGATACTTCTTTTCTTTACATGGGAAGATTGTTAGAAGGCTTCGGAGTTGGGATTAT 716 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct 639 AAAAGATACTTCTTTTCTTTACATGGGAAGATTGTTAGAAGGTTTCGGCGTTGGGATAAT 698 Query 717 CTCCTATACGGTTCCCGTATATATAGCTGAGATCGCTCCACAG-ACCATGAGAGGAGCCT 775 ||| |||||||| ||||| |||||||||||||||||||||||| || ||||||||||||| Sbjct 699 CTCTTATACGGTGCCCGTGTATATAGCTGAGATCGCTCCACAGCAC-ATGAGAGGAGCCT 757 Query 776 TAGGTTCAGTTAACCAGCTTTCTGTAACAATTGGGATAATGCTGGCGTATTTACTCGGTC 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 TAGGTTCAGTTAACCAGCTTTCTGTAACAATTGGGATAATGCTGGCGTATTTACTCGGTC 817 Query 836 TCTTTGTTCCATGGAGAATTCTTGCAGTTTTGGGAGTATTGCCATGTACATTGTTGATAC 895 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 818 TCTTTGTTCCATGGAGAATTCTTGCTGTTTTGGGAGTATTGCCATGTACATTGTTGATAC 877 Query 896 CGGGTCtttttttCATTCCTGAATCTCCTCGGTGGTTGGCAAAGATGGGTTTGACAGATG 955 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 878 CGGGTCTGTTTTTCATTCCTGAATCTCCTCGGTGGTTGGCAAAGATGGGGTTGACAGATG 937 Query 956 ATTTCGAAACTTCATTGCAAGTTCTTCGTGGATTTGAGACTGATATTACCGTTGAGGTTA 1015 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 938 ATTTCGAAACTTCATTGCAAGTTCTTCGTGGATTTGATACTGATATCACCGTTGAGGTTA 997 Query 1016 ATGAAATCAAGAGATCTGTGGCATCATCTAGCAAACGTTCTGCAGTTCGGTTTGTAGACC 1075 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 998 ATGAAATCAAGAGATCTGTGGCATCATCTGGCAAACGTTCTGCAATTCGGTTTGTAGACC 1057 Query 1076 TCAAGCGCAGGAGATACTATTTCCCACTGATGGTTGGTATAGGGCTGCTTGCACTTCAAC 1135 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1058 TCAAGCGCAGGAGATACTATTTCCCACTGATGGTTGGTATAGGGCTGCTTGTACTTCAAC 1117 Query 1136 AACTTGGAGGAATCAATGGTGTCTTGTTCTATTCGAGTACAATTTTTGAATCTGCAGGGG 1195 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1118 AACTTGGAGGAATTAATGGTGTCTTGTTCTATTCGAGTACAATTTTTGAATCTGCAGGGG 1177 Query 1196 TGACATCAAGTAATGTGGCGACATTTGGAGTTGGCGTTGTTCAGGTAGTGGCGACTGG-G 1254 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1178 TGACATCAAGTAATGTGGCGACATTTGGAGTTGGCGTTGTTCAGGTAGTGGCGACTGCAG 1237 Query 1255 ATAGCGACATGGTTGGTGGATAAAGCAGGTCGTCGGCTTCTACTCATGATCTCTTCTATC 1314 ||||||||||||||||||||||| |||||||||| ||||| ||||||||||| || ||| Sbjct 1238 -TAGCGACATGGTTGGTGGATAAATCAGGTCGTCGACTTCTGCTCATGATCTCATCCATC 1296 Query 1315 GGAATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTTTACCTTAAGGAATTTGTATCA 1374 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1297 GGAATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTTTATCTTAAGGAATTCATATCA 1356 Query 1375 CCTGATTCCAACATGTACAACATTCTAAGCATGGTTTCCGTAGTTGGAGTTGTGGCTATG 1434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1357 CCTGATTCCAACATGTACAACATTCTAAGCATGGTTTCCGTAGTTGGAGTTGTGGCTATG 1416 Query 1435 GTTATTTCTTGCTCTCTAGGAATGGGACCAATTCCATGGCTGATTATGTCTGAGATTCTG 1494 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1417 GTTATTTCATGTTCTCTAGGAATGGGACCAATTCCATGGCTGATTATGTCTGAGATTCTG 1476 Query 1495 CCAGTGAATATAAAGGGTTTAGCCGGAAGTATAGCAACTTTGTTAAACTGGTTCGTGTCA 1554 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1477 CCAGTGAATATAAAGGGTTTAGCCGGAAGTATAGCAACTTTGCTAAACTGGTTCGTGTCA 1536 Query 1555 TGGTTAGTGACAATGACTGCAAATATGCTGTTAGCATGGAGCAGTGGGGGAACTTTCACT 1614 ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 1537 TGGTTAGTGACAATGACTGCAAATATGCTCTTAGCGTGGAGCAGTGGAGGAACTTTCACT 1596 Query 1615 CTCTACGCTTTGGTTTGTGGATTCACTGTGGTTTTTGTGAGTCTTTGGGTTCCTGAGACT 1674 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1597 CTATACGCTTTGGTTTGTGGATTCACTGTGGTCTTTGTGAGTCTTTGGGTTCCTGAGACT 1656 Query 1675 AAAGGAAAAACGCTTGAAGAGATCCAAGCTTTGTTCAGATGATCAAAACAAGAAGAGGAA 1734 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1657 AAAGGCAAAACGCTTGAAGAGATTCAAGCTTTGTTCAGATGATCAAAACAAGAAGA---- 1712 Query 1735 GAAGAAGACAAAATTTTCACTTTTTGCTTTCTCCATTACAGATCATTCTTTTG-TCCCTT 1793 |||| |||| || | | ||||||||||||||||||| |||||| Sbjct 1713 -------------TTTTG-CTTT---CT--C-C-ATTACAGATCATTCTTTTGGTCCCTT 1751 Query 1794 CCCTGTGTCTGTATTTCATGCTTTGTTCAATGTATTTCTTCTTGACATTGATTATAATTT 1853 | ||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1752 CTCTGTGTCTGTATTTCTTGCTTTGTTCAATGTCTTTCTTTTTGACATTGATTATAATTT 1811 Query 1854 GTTTATCTTGTACAAGCATATCATTATACCtttaaatttgattttttgtttttgtgtgta 1913 ||||||||||||||||||||||||| |||||||||||| || | | ||||| |||||| Sbjct 1812 GTTTATCTTGTACAAGCATATCATTTTACCTTTAAATTCGACCCTCTATTTTT-TGTGTA 1870 Query 1914 atttttCGGATTCTCAAGATTAATAG 1939 ||||| |||||| ||||||||||||| Sbjct 1871 ATTTTCCGGATTTTCAAGATTAATAG 1896 > Ahg926902 jgi|Araly1|926902|scaffold_202463.1 Length=1505 Score = 1519 bits (822), Expect = 0.0 Identities = 1273/1489 (85%), Gaps = 37/1489 (2%) Strand=Plus/Plus Query 245 AAAAGATGAGTTTTAGGGATGATAATACGGAAGAGGGAAGAAATGATCTT-CGGCGACCG 303 ||||||||||||| || ||||||||| || ||||| || |||||| || || || ||| Sbjct 17 AAAAGATGAGTTTCAGAGATGATAAT---GAGGAGGGTAGGAATGAT-TTGCGACGGCCG 72 Query 304 TTCT-TACACACAGGAAGTTGGTATCGGATGGGTTCGAGACAATCTAGTATGTTGGAATC 362 || | ||||||| ||||| ||||| ||||||||||||||||| || |||||| ||| || Sbjct 73 TT-TATACACACCGGAAGCTGGTACCGGATGGGTTCGAGACAGTCGAGTATGATGGGCTC 131 Query 363 GTCTCAAGTTATTCGAGACAGCTCAATTTCTG-TCTTAGCTTGTGTTTTGATTGTTGCTC 421 |||||||||||||||||||||||| || |||| |||| || ||||||||||| ||||||| Sbjct 132 GTCTCAAGTTATTCGAGACAGCTCTATCTCTGTTCTT-GCATGTGTTTTGATCGTTGCTC 190 Query 422 TTGGTCCTATTCAATTCGGATTCACTTGTGGTTATTCCTCACCAACTCAAGCTGCCATTA 481 ||||||||||||||||||||||||||||||||||||| || |||||||||||||| || | Sbjct 191 TTGGTCCTATTCAATTCGGATTCACTTGTGGTTATTCATCTCCAACTCAAGCTGCAATCA 250 Query 482 CTAAGGATCTTGGTTTAACTGTATCAGAGTACTCTGTGTTTGGGTCTCTATCCAATGTGG 541 |||||||||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||||| Sbjct 251 CTAAGGATCTCGGTTTAACGGTATCTGAGTACTCTGTATTTGGTTCTCTGTCCAATGTGG 310 Query 542 GTGCTATGGTTGGAGCAATTGCGAGTGGTCAGATTGCTGAATACGTTGGACGGAAAGGGT 601 ||||||||||||| |||||||| |||||||||||||| |||||| ||||||| ||||||| Sbjct 311 GTGCTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACGAAAAGGGT 370 Query 602 CTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTT-CGATATCATTTGCAAAA 660 |||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||| Sbjct 371 CTCTGATGATTGCTGCAATTCCCAATATCATTGGATGGCTTTGC-ATATCATTTGCAAAT 429 Query 661 GATACTTCTTTTCTTTACATGGGAAGA-TTGTTAGAAGGCTTCGGAGTTGGGATTATCTC 719 |||||||||||||||||||||||| || || ||||||||||| || |||||||| ||||| Sbjct 430 GATACTTCTTTTCTTTACATGGGACGACTT-TTAGAAGGCTTTGGCGTTGGGATCATCTC 488 Query 720 CTATACGGTTCCCGTATATATAGCTGAGATCGCTCCACAGACCATGAGAGGAGCCTTAGG 779 || || || || |||||||| || ||||| |||||||| | |||||||||| || || Sbjct 489 TTACACTGTACCTGTATATATCGCGGAGATAGCTCCACAAAATATGAGAGGAGGATTGGG 548 Query 780 TTCAGTTAACCAGCTTTCTGTAACAATTGGGATAATGCTGGCGTATTTACTCGGTCTCTT 839 ||| ||||||||||||||||| |||||||| |||||| |||||||| |||| || ||||| Sbjct 549 TTCGGTTAACCAGCTTTCTGTGACAATTGGAATAATGTTGGCGTATCTACTTGGCCTCTT 608 Query 840 TGTTCCATGGAGAATTCTTGCAGTTTTGGG-AGTATTGCCATGTACATTGTTGATACCGG 898 ||||||||||||||||||||||||| |||| | ||||||| || ||| | |||||||| | Sbjct 609 TGTTCCATGGAGAATTCTTGCAGTTCTGGGGA-TATTGCCGTGCACAGTATTGATACCCG 667 Query 899 GTCtttttttCATTCCTGAATCTCCTCGGTGGTTGGCAAAGATGGGTTTGACAGATGATT 958 |||| |||||||| || ||||| ||||| ||| ||||||| |||||| |||||||||||| Sbjct 668 GTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTGGCAAAAATGGGTATGACAGATGATT 727 Query 959 TCGAAACTTCATTGCAAGTTCTTCGTGGATTTGAGACTGATATTACCGTTGAGGTTAATG 1018 | ||||||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||||| Sbjct 728 TTGAAACTTCATTACAAGTTCTTCGAGGATTCGAGACTGATATTACAGTTGAAGTTAATG 787 Query 1019 AAATCAAGAGATCTGTGGCATCATCTAGCAAA-CGTTCTGCAGTTCGGTTTGTAGACCTC 1077 ||||||||||||||||||||||||||| |||| || | |||||||||||| ||| ||| Sbjct 788 AAATCAAGAGATCTGTGGCATCATCTA-CAAAGCGAAATACAGTTCGGTTTGCAGATCTC 846 Query 1078 AAGCGCAGGAGATACTATTTCCCACTGATGGTTGGTATAGGGCTGCTTGCACTTCAACAA 1137 || ||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||| Sbjct 847 AAACGCAGGAGATACTATTTCCCACTTACGGTTGGTATAGGGTTGCTTGTACTTCAACAA 906 Query 1138 CTTGGAGGAATCAATGGTGTCTTGTTCTATTCGAGTACAATTTTTGAATCTGCAGGGGTG 1197 ||||| ||||| ||||| ||| | |||||||| |||||||| |||||||||||||| || Sbjct 907 CTTGGTGGAATTAATGGCGTCCTATTCTATTCCAGTACAATATTTGAATCTGCAGGAGTT 966 Query 1198 ACATCAAGTAATGTGGCGACATTTGGAGTTGGCGTTGTTCAGGTAGTGGCGACTGGGATA 1257 ||||| ||||| | || |||||||| || || | | |||||||||| || |||| ||| Sbjct 967 ACATCGAGTAACGCAGCAACATTTGGGGTCGGGGCTATTCAGGTAGTCGCTACTGCAATA 1026 Query 1258 GCGACATGGTTGGTGGATAAAGCAGGTCGTCGGCTTCTACTCATGATCTCTTCTATCGGA 1317 |||||||||||||||| |||||||||||||| ||||| || | |||||||| | || Sbjct 1027 TCGACATGGTTGGTGGACAAAGCAGGTCGTCGACTTCTGCTTACCATCTCTTCGGTTGGG 1086 Query 1318 ATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTT-TACCTTAAGGAATTTGTATCACC 1376 ||||| || ||||| || ||||| |||| ||| ||| |||||||||| |||||| || || Sbjct 1087 ATGACAATTAGCCTTGTAATTGTCGCAGCTGC-TTTCTACCTTAAGGGATTTGTGTCTCC 1145 Query 1377 TGATTCCA-ACATGTACAACATT--CTAAGCATGGTT-TCCGTAGTTGGAGTTGTGGCTA 1432 |||||| | |||||||||| || || ||||| || || ||||||||||||||||| | Sbjct 1146 TGATTC-AGACATGTACAA--TTGGCTGAGCATA-TTGTCAGTAGTTGGAGTTGTGGCAA 1201 Query 1433 TGGTTATTTCTTGCTC-TCTAGGAATGGGACCAATTCCATGGCTGATTATGTCTGAGATT 1491 ||||| |||||| ||| | | |||||||||||||| || ||||| |||||||||||||| Sbjct 1202 TGGTTGTTTCTTTCTCAT-TGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGATC 1260 Query 1492 CTGCCAGTGAATATAAAGGGTTTAGCCGGAAGTATAGCAACTTT-GTTAAACTGGTTCGT 1550 || || ||||| |||||||||||||| |||||||| |||||| | | || |||||| | Sbjct 1261 CTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCAAT-TGGTTCTT 1319 Query 1551 GTCATGGTT-AGTGACAATGACTGCAAA-TATGCTGTTAGCATGGAGCAGTGGGGGAACT 1608 || ||||| | | || ||||| ||||| | |||| ||||| ||||||||||| |||||| Sbjct 1320 TTCTTGGTTGA-TCACTATGACAGCAAACT-TGCTCTTAGCCTGGAGCAGTGGAGGAACT 1377 Query 1609 TTCACTCTCTACGCTTTGGTTTGTGGATTCACTGTGGTTTTTGTGAGTCTTTGGGTTCCT 1668 |||||||| |||| |||||||||| |||||| ||||| || |||| ||| ||||||||| Sbjct 1378 TTCACTCTGTACGGGTTGGTTTGTGCATTCACAGTGGTGTTCGTGACTCTATGGGTTCCT 1437 Query 1669 GAGACTAAAGGAAAAACGCTTGAAGAGA-TCCAAGCTTTGTTCAGATGA 1716 ||||| ||||| | ||| |||||||| | | ||||| |||||||||||| Sbjct 1438 GAGACCAAAGGCAGAACTCTTGAAGA-ACTTCAAGCCTTGTTCAGATGA 1485 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73399902115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5