BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19490.1 Length=1736 Score E Sequences producing significant alignments: (Bits) Value Ahg312884 jgi|Araly1|312884|fgenesh1_pm.C_scaffold_1001664 2073 0.0 > Ahg312884 jgi|Araly1|312884|fgenesh1_pm.C_scaffold_1001664 Length=1944 Score = 2073 bits (1122), Expect = 0.0 Identities = 1321/1413 (93%), Gaps = 30/1413 (2%) Strand=Plus/Plus Query 47 TTGGAGCCTATATCATCGAGTTGTTGCTCGTCGTCTTCTTCTTCTTCTGGGGAGGAGAAT 106 |||||||||||||||||||||||||| | ||| |||||||| |||||||||||| | Sbjct 559 TTGGAGCCTATATCATCGAGTTGTTG--C-TCG---TCTTCTTCGTCTGGGGAGGAGGGT 612 Query 107 ACTGCGGCGGCGAACATGACGGAGATGGAGGCGGCAGAAGCATTGGCGGATTTAGCGCAG 166 || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 613 ACGGCGGCGGCGAATATGACGGAGATGGAGGCGGCAGAGGCATTGGCGGATTTAGCGCAG 672 Query 167 CTTGCGATAATGCGAGAGCAGGTTTTCGAATCTGCAGCGAGTTGGGGAAGTAAAGGGAAA 226 |||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| Sbjct 673 CTTGCGATAATGCGAGAGCAGGTTTTCGAATCCGCGGCGAGTTGGGGAAGTAAAGGAAAA 732 Query 227 CGGGTGAGGAAGCGAGTCAAGACTGAGTCTCCTCCTTCTGACTCGCTTTTGAAACCACCT 286 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 733 CGAGTGAGGAAGCGAGTCAAGACTGAGTCTCCTCCGTCTGACTCGCTTTTGAAACCACCT 792 Query 287 GACTCTGATACGTTACCTACTCCGGATCTAGCTGAGGAACGATTAGTgaaagaagaagag 346 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 793 GACTCTGAAACGTTACCTACTCCGGATCTAGCTGAGGAACGATTAGTGAAAGAAG-A-A- 849 Query 347 gaagaagaagaagTTGAACCAATAACTAAAGAACTAACTAAAGCTCCGGTTAAATCTGAA 406 ||||||||||||||| | ||| || |||||||||||||||||||| ||||| Sbjct 850 GAAGAAGAAGAAGTT----C---AAC----CAA-TAACTAAAGCTCCGGTTAAAACTGAA 897 Query 407 ATCAATGGTGAAACACCTAAACCAATTCTTGCTTCGACTCTAATAAGGTGTAGTAGATCA 466 || ||||||||||||||||||| || ||||||||| || || | ||||||||||||||| Sbjct 898 ATGAATGGTGAAACACCTAAACTAAATCTTGCTTCTACACT--T-AGGTGTAGTAGATCA 954 Query 467 AATGGTTGTGGCCGATCAAGACAGAATTTAAGTGAGGCTGAAAGAGAAGAACGTAGAATC 526 ||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct 955 AATGGCTGTGGCCGATCGAGGCATAATTTAAGTGAGGCTGAAAGAGAAGAACGTAGAATC 1014 Query 527 AGAAGGATATTAGCTAATAGAGAATCTGCGAGGCAGACAATTCGGCGAAGACAGGCAATG 586 |||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1015 CGAAGAATTTTAGCTAACAGAGAATCTGCGAGGCAGACAATTCGACGAAGACAGGCAATG 1074 Query 587 TGTGAGGAGTTGAGTAAAAAAGCAGCTGATCTGACATATGAGAATGAGAATTTGAGGAGG 646 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 TGCGAGGAGTTGAGTAAAAAAGCAGCTGATCTGACATATGAGAATGAGAATTTGAGGAGG 1134 Query 647 GAAAAGGATTGGGCTTTGAAAGAGTTTCAGTCTTTGGAGACGATTAACAAGCATTTAAAG 706 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1135 GAAAAGGATTGGGCTTTGAAAGAGTTTCATTCTTTGGAGACGATTAACAAGCATTTAAAG 1194 Query 707 GAACAGGTATTGAAGTCAGTAAAACCCGATACAAAAGAGCCTGAAGAATC-ACCCAAGCC 765 |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| || || Sbjct 1195 GAACAGGTATCGAAGTCAGTAAAACCCGATACAAAAGAACCTGAAGAATCGACCAAA-CC 1253 Query 766 ATCACAAGTTGAGATGTCTACATCATCTACTCCGTTTTACTTCTACAACCAGAATCCATA 825 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 ATCACAAGTTGATATGTCTACATCATCTACTCCGTTTTACTTCTACAACCAGAATCCATA 1313 Query 826 TCAGCTTTTCTGCTGGCCTCATGTTACTCAATCATCAAATCCAATGATATCGCCACTTGA 885 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1314 TCAGCTTTTCTACTGGCCTCATGTTACTCAATCATCAAATCCAACGATATCGCCACTTGA 1373 Query 886 ATTC-CCTACTTCGGGAGGAGCTTCTGCTAAAACTATTACCACGCAGGAGCATGAAAATG 944 |||| || || |||||||||||||||||||||| ||| ||| | ||||||||||||||| Sbjct 1374 ATTCGCC-ACATCGGGAGGAGCTTCTGCTAAAAGTATGACCTCACAGGAGCATGAAAATC 1432 Query 945 CTGCAGATGATAATGGGCAAAAAACTCACTTTTACGTTGTACCTTGCCCTTGGTTTCTCC 1004 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1433 CTGCAGATGATAATGGGCAAAAAACTCATTTTTACGTTGTACCTTGCCCTTGGTTTCTCC 1492 Query 1005 CTCCTCCTGATCACAGCAATGGTGTTCCTTTCGGGCTTCAAGATACACAAAGAGGTACTT 1064 ||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||| Sbjct 1493 CTCCTCCTGATCAGAGCAACAGTGTTCCCTTCGGGCTTCAAAATACACAAAGAGGTACTT 1552 Query 1065 TTTCAAACGGGCACCATATCGATGATTCTTCTGCAAGACCGATGGATGTCACAGAAACTC 1124 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1553 TTTCAAACGGGCACCATATCGATGATTCTTCTGCAAGACCGATAGAGGTCACAGAAACTC 1612 Query 1125 CGCGGTCCCATCTACCAACTAGAATCAAAGAAGAGGACTCTGGTTCACCCGAAACCAGAC 1184 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1613 TGCGGTCCCATCTACCAACTAGAATCAAAGAAGAAGACTCTGGTTCACCCGAAACCAGAC 1672 Query 1185 CTTTATATGATCTCAACGAATCTGCTACTGAAGTCCTCTCAGAAGGAGGAGATGGATTT- 1243 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1673 CTTTATATGATCTCAACGAATCTGCAACTGAAGTCCTCTCAGAAGGAGGAGATG-ATTTT 1731 Query 1244 CCTGTAACGCAGCAAGCTTATAGTTTAAAGCATGAAGATGTTTCTGAGACAACTAATGGA 1303 ||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1732 CCTATAACGCAACAAGATTATAGTTTAAAGCATGAAGATGTTTCCGAGACAACTAATGGA 1791 Query 1304 GTTACACTGATGCCGCCTGGTCATCATGTTTTGATTTCTCTACCGGAGAAAAAGCATGGA 1363 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 1792 GTTACACTGATGCCGCCTGGTCATCATGTTTTGATTTCTCTACCGGGGAAAAAGCAAGGA 1851 Query 1364 TCGTTGGCTGCAGCGGAAGCTAGAAAGAGACGGAAAGAACTCACAAGGCTCAAGAACCTC 1423 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1852 TCTTTGGCTGCAGCGGAAGCGAGAAAGAGACGGAAAGAACTCACAAGGCTCAAGAACCTC 1911 Query 1424 CATGGCCGTCAATGTCGGATGCAGGTCGGATAA 1456 ||||||||||||||||||||||| ||||||||| Sbjct 1912 CATGGCCGTCAATGTCGGATGCAAGTCGGATAA 1944 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65134318950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5