BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19640.1 Length=1589 Score E Sequences producing significant alignments: (Bits) Value Ahg472188 jgi|Araly1|472188|fgenesh2_kg.1__2142__AT1G19640.1 2084 0.0 > Ahg472188 jgi|Araly1|472188|fgenesh2_kg.1__2142__AT1G19640.1 Length=1356 Score = 2084 bits (1128), Expect = 0.0 Identities = 1293/1369 (94%), Gaps = 25/1369 (2%) Strand=Plus/Plus Query 89 TTCTGCTTCATCaaaaagaaagagacacaaagagcgagagagggagagagaTGGAGGTAA 148 |||||||||||||||||||||||||||| | | ||| ||| | |||||| |||| Sbjct 1 TTCTGCTTCATCAAAAAGAAAGAGACAC----A---A-AGA--GAG-G-GATGGAAGTAA 48 Query 149 TGCGAGTTCTTCACATGAACAAAGGAAACGGTGAAACGAGTTATGCCAAGAACTCCACCG 208 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 49 TGCGAGTTCTTCACATGAACAAAGGAAACGGTGAAACAAGTTATGCCAAGAACTCCACCG 108 Query 209 CTCAGAGTAACATAATATCTCTAGGCAGAAGAGTAATGGACGAGGCCTTGAAGAAGTTAA 268 |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 109 TTCAGAGCAACATAATATCTCTAGGCAGAAGAGTAATTGACGAGGCCTTGAAGAAGCTAA 168 Query 269 TGATGAGCAATTCAGAGATTTCGAGCATTGGAATCGCCGACTTAGGCTGCTCCTCCGGTC 328 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 169 TGATGAGAAATTCAGAGATTTCGAGCATTGGAATCGCCGACTTAGGTTGCTCCTCCGGCC 228 Query 329 CGAACAGTCTCTTGTCCATCTCCAACATAGTTGACACGATCCACAACTTGTGTCCTGACC 388 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 229 CGAACAGTCTCTTGTCCATCTCTAACATAGTTGACACGATCCACAACTTGTGTCCTGACC 288 Query 389 TCGACCGTCCTGTCCCTGAGCTCAGAGTCTCTCTGAACGACCTCCCTAGCAATGACTTCA 448 |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 289 TCGACCGTCCAGTCCCTGAGCTCAGACTCTCTCTCAACGACCTCCCTAGCAATGACTTCA 348 Query 449 ACTACATATGTGCTTCTTTGCCAGAGTTTTACGACCGGGTTAATAATAACAAGGAGGGTT 508 ||||||||| |||||||||||| |||||||| |||||| ||||||||||||||||||||| Sbjct 349 ACTACATATTTGCTTCTTTGCCGGAGTTTTATGACCGGATTAATAATAACAAGGAGGGTT 408 Query 509 TAGGGTTCGGTCGTGGAGGAGGAGAATCGTGTTTTGTGTCGGCCGTCCCAGGTTCGTTCT 568 ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 409 TAGGGTTCGGTCGCGGAGGAGGAGAATCGTGTTTTGTGTCGGCCGTCCCTGGCTCGTTCT 468 Query 569 ACGGACGTTTGTTTCCTCGCCGGAGCCTTCACTTTGTGCATTCTTCTTCTAGTTTACATT 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 ACGGACGTTTGTTTCCTCGCCGGAGCCTTCACTTTGTGCATTCTTCTTCTAGTTTACATT 528 Query 629 GGTTATCTCAGGTTCCATGTCGTGAGGCGGAGAAGGAAGACAGGACAATAACAGCTGATT 688 |||| |||||||||||||||||||||| |||||||||||||||| | |||| |||||||| Sbjct 529 GGTTGTCTCAGGTTCCATGTCGTGAGGTGGAGAAGGAAGACAGGGCGATAAGAGCTGATT 588 Query 689 TAGAAAACATGGGGAAAATATACATATCAAAGACAAGTCCTAAGAGTGCACATAAAGCTT 748 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 TAGACAACATGGGGAAAATATACATATCAAAGACAAGTCCTAAGAGTGCACATAAAGCTT 648 Query 749 ATGCTCTTCAATTCCAAACTGATTTCTGGGtttttttGAGATCGCGATCTGAGGAGTTGG 808 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 649 ATGCTCTTCAATTCCAAACTGATTTCTTGGTTTTTTTGAGATCGCGATCTGAGGAGTTGG 708 Query 809 TCCCGGGAGGCCGAATGGTTTTATCGTTCCTTGGTAGAAGATCACTGGATCCCACAACCG 868 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 709 TCCCGGGAGGACGAATGGTTTTATCGTTCCTTGGTAGAAGCTCGCTGGATCCCACAACCG 768 Query 869 AAGAGAGTTGCTATCAATGGGAACTCCTAGCTCAAGCTCTTATGTCCATGGCCAAAGAGG 928 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 AAGAGAGTTGCTATCAATGGGAACTCCTAGCTCAAGCTCTTATGTCCATGGCCAAAGAGG 828 Query 929 GTATCATCGAGGAAGAGAAGATCGATGCTTTCAACGCTCCTTACTATGCTGCGAGCTCCG 988 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 829 GTATCATCGAGGAAGAGAAGATCGATGCTTTCAACGCTCCTTACTATGCTGCAAGCTCCG 888 Query 989 AAGAGTTGAAAATGGTGATAGAGAAAGAAGGGTCATTTTCGATCGATAGGCTTGAGATAA 1048 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 889 AAGAGTTGAAAATGGTGATAGAGAAAGAAGGGTCCTTTTCGATCGATAGGCTCGAGATAA 948 Query 1049 GTCCGATTGATTGGGAAGGTGGGAGTATCAGTGAGGAGAGTTATGACCTTGTAATAAGGT 1108 ||||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||||| Sbjct 949 GTCCGGTTGATTGGGAAGGTAGGAGTATCAGTGAGGAGAGTTATGACCTAGTAGTAAGGT 1008 Query 1109 CCAAACCCGAAGCCCTAGCTAGTGGCCGAAGAGTGTCTAATACCATAAGAGCTGTGGTCG 1168 ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 1009 CCAAACCTGAAGCCCTAGCTAGTGGACGAAGAGTGGCTAATACCATAAGAGCTGTGGTCG 1068 Query 1169 AGCCGATGCTAGAACCTACTTTCGGTGAAAATGTGATGGACGAGCTTTTTGAAAGGTATG 1228 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1069 AGCCGATGCTAGAACCTACATTCGGTGAAAATGTGATGGACGAGCTTTTTGAAAGGTATG 1128 Query 1229 CAAAGATCGTGGGAGAGTACTTCTATGTAAGCTCGCCACGATACGCTATTGTTATTCTTT 1288 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 1129 CAAAGATCGTGGGAGAGTACTTCTATGTAAGCTCGCCTCGATACGCTATTGTTATTGTTT 1188 Query 1289 CGCTCGTTAGAGCCGGTTGATCGTGTTATAACATATGCC-A-ATATA--CATGTCTTTGG 1344 ||||||||||| ||||||||||||| ||||||||||||| | ||||| ||||||||||| Sbjct 1189 CGCTCGTTAGAACCGGTTGATCGTGATATAACATATGCCTATATATATACATGTCTTTGG 1248 Query 1345 GCCTACAATGACATGATTTGGTA-GTTTTCTAATCAAGCATA-TGTA-AT--A-TA--AT 1396 ||||||||||||||||||| || |||||||||||||| ||| |||| || | || || Sbjct 1249 ACCTACAATGACATGATTTG-TAAGTTTTCTAATCAAGTATACTGTATATGTAATATCAT 1307 Query 1397 TTGCTTCGAGAATAAAATAATAAAATAAAGTCTGATGTTACGGTAGACC 1445 ||||||||||||||||| ||||||||| ||| |||| |||||||||||| Sbjct 1308 TTGCTTCGAGAATAAAACAATAAAATAGAGTGTGATTTTACGGTAGACC 1356 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59535052935 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5