BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19650.1
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472189 jgi|Araly1|472189|fgenesh2_kg.1__2143__AT1G19650.1 3118 0.0
Ahg476682 jgi|Araly1|476682|fgenesh2_kg.2__1812__AT1G75370.1 1153 0.0
> Ahg472189 jgi|Araly1|472189|fgenesh2_kg.1__2143__AT1G19650.1
Length=2268
Score = 3118 bits (1688), Expect = 0.0
Identities = 2113/2307 (92%), Gaps = 74/2307 (3%)
Strand=Plus/Plus
Query 7 aaaaaaaG-TCGAATCTTCAACATTTATGGCTCTGATTTTCCGGCCGCCGTGAAAATTAG 65
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAGATCGAATCTTCAACATTTATGGCTCTGATTTTCCGGCCGCCGTGAAAATTAG 60
Query 66 TAGCCAACATTTA-TTTCACATTCGCATAACGAAACGAATCAATAAATCGCTCACAGTTA 124
|||| |||| ||| |||||| ||||||| |||| ||| ||||||||||
Sbjct 61 TAGCAAACAATTATTTTCACGTTCGCAT-----AACG-------AAA---CTCACAGTTA 105
Query 125 CTTCTTCAT-ATACCCC--TT--TCCTTCAATTTC----AGTTTCAGA-TTTTCCAAA-T 173
||||||||| | ||||| || |||||||||||| | ||||||| ||||| ||| |
Sbjct 106 CTTCTTCATCA-ACCCCTTTTGATCCTTCAATTTCGAAAATTTTCAGATTTTTCTAAAGT 164
Query 174 TCTAAAGTTTCGAtttttttGGAGTATCAAGTTCGATTGATTCTTCTCAATGTCGGGTCC 233
| | | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 T-TCGA-TTT-TTTTTTTTTGGAGTATCAAGTTCGATTGATTCTTCTCAATGTCGGGTCC 221
Query 234 CCTAGATCGATTCACAAGCCCATGTTTCTCCAACAATGGTGAGAAAAGAGAAAAGAAGTC 293
|| || ||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 222 TCTTGAACGATTCACAAGTCCATGTTTCTCCAACAATGGTGAGAGAAGAGAAAAGAAGTC 281
Query 294 AGATTTCGAAGTTTCGGAGGATGA-G--AAGAAAACTAGAATTGGTGGAATTCTT-AAGA 349
||||||||||||||| |||||||| | |||||||||||| ||||||| ||| || | ||
Sbjct 282 AGATTTCGAAGTTTCAGAGGATGATGATAAGAAAACTAGAGTTGGTGGTATT-TTCAGGA 340
Query 350 AGAAATCATCCAAAAGCAAATTCAGACATTCCCTGAAGAGG--A--GAG--G--G-A-G- 398
||||||||||||||| ||||||||||||||||||||||||| | ||| | | | |
Sbjct 341 AGAAATCATCCAAAACCAAATTCAGACATTCCCTGAAGAGGAAAGGGAGCAGCAGTAGGA 400
Query 399 C-AGAAGCATTGACCGGACTCTTTCGCTTACCTTTGAAGACATACATGATGCTGAAGAAT 457
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 401 CGAGAAGCATTGACCGGACTCTCTCGCTTACCTTTGAAGACATACATGATGCTGAAGAAT 460
Query 458 TAAGATATGTCTCTGAATTCCGACAATCACTTATCTCTGATCATTTACTGCCTCCAAACC 517
|| ||||||||||| ||||||||||||| || |||||||||||||| || || |||||||
Sbjct 461 TACGATATGTCTCTCAATTCCGACAATCTCTCATCTCTGATCATTTGCTACCACCAAACC 520
Query 518 TTGATGATTATCACATCATGTTGAGATTCCTCTTCGCTAGGAAATTTGATCTAGGAAAAG 577
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 521 TTGATGATTATCACATCATGTTGAGATTCCTGTTCGCTAGGAAATTTGATCTTGGAAAAG 580
Query 578 CAAAGTTAATGTGGACTAACATGATCCAATGGAGAAGGGATTTTGGCACAGACACAATCT 637
||||||||||||||||||| |||||||| ||||||||||| || || |||||||||||||
Sbjct 581 CAAAGTTAATGTGGACTAATATGATCCATTGGAGAAGGGACTTCGGAACAGACACAATCT 640
Query 638 TGGAGGACTTTGAGTTTCCTGAGTTGGATGAGGTTCTCAGGTACTACCCTCAGGGATATC 697
|||||||||||||||||||||| ||||| || ||||||| ||| || || ||||||||||
Sbjct 641 TGGAGGACTTTGAGTTTCCTGAATTGGAAGAAGTTCTCAAGTATTATCCGCAGGGATATC 700
Query 698 ATGGTGTTGATAAGGAAGGAAGACCTGTTTACATCGAAAGATTAGGAAAAGTCGACGCAA 757
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 701 ATGGTGTTGATAAGGAAGGGAGACCTGTTTACATCGAAAGATTAGGAAAAGTCGACGCAA 760
Query 758 GCAAACTCATGCAAGTCACTACATTGGAAAGGTACCTGAGGTATCATGTTAAAGAGTTTG 817
||||||||||||||||||||||||| ||||| || |||| ||||||||||| |||||||
Sbjct 761 GCAAACTCATGCAAGTCACTACATTAGAAAGATATTTGAGATATCATGTTAAGGAGTTTG 820
Query 818 AGAAGACTATCACTGTCAAGTTTCCTGCTTGCTGCATTGCTGCTAAGAGACACATTGACT 877
| || ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 821 AAAAAACTATTACTGTCAAGTTCCCTGCTTGCTGCATTGCTGCTAAGAGACACATCGACT 880
Query 878 CCAGTACAACAATCCTAGATGTCCAAGGCCTGGGCTTGAAAAATTTCACTAAAACTGCTC 937
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 881 CCAGTACAACAATCCTAGATGTCCAAGGCCTGGGCTTAAAAAATTTCACTAAAACTGCTC 940
Query 938 GGGATCTTATAATCCAGTTGCAAAAGATTGATAGTGATAACTACCCTGAGACACTTCACC 997
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 GGGATCTTATAATCCAGCTGCAAAAGATTGATAGTGATAACTACCCTGAGACACTTCACC 1000
Query 998 GTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGT 1057
|||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 1001 GTATGTTTATTATCAATGCCGGCTCTGGTTTTAAGCTACTTTGGGGCACAGTAAAATCGT 1060
Query 1058 TTCTTGATCCAAAGACTGTCTCCAAAATACATGTCCTTGGGAACAAGTACCAGAACAAAT 1117
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1061 TTCTTGATCCAAAGACTGTCTCCAAAATACATGTCCTTGGCAACAAGTACCAGAACAAAC 1120
Query 1118 TACTTGAGATGATTGATGCAAGCCAGCTGCCAGATTTT-TTCGGTGGTACTTGCACTTGT 1176
||||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 1121 TACTTGAGATGATAGATGCAAGCCAACTGCCAGATTTTCTT-GGTGGTACTTGCACTTGT 1179
Query 1177 GCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTA 1236
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1180 GCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACCCTGAGATACTA 1239
Query 1237 AAGATGGGCCGCAGTGGTGGGACGTTCTGTAGGCATGCTGGTGCTTTCCTAAGCAGTGAT 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 AAGATGGGCCGCAGTGGTGGGACGTTCTGTAGGCATGCTGGTGCTTTCCTAAGCAGTGAT 1299
Query 1297 TCCCAAATATCTTCATCGGATAAGCCAACTTATTCGTTGAAAGTTAGTGACACCTCAACA 1356
||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1300 TCCCAAATATCCTCATCGGATAAGCAAACTTATTCGTTGAAAGTTAGTGACACATCAACA 1359
Query 1357 GCAAAGTCAGGGTCTGAATTGGAAGAGATGGCTTCACCGAAAACAAATACGAACAATCAT 1416
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1360 GCAGAGTCAGGGTCTGAATTGGAAGAGATGGCTTCACCGAAAACAAATATGAACAATCAT 1419
Query 1417 GTACCCAAGTTAACTCCTGTTTCTGAATATGCCAATGGTAACATAAGTCCTACTGTTTTA 1476
||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct 1420 GTACCCAAGTTGACTCCTGTTTCTGAAAATGCCAATGGTAGCAGAAGTCCTACTGTTTTA 1479
Query 1477 TCTGAGTATGAAGAATGTGTACCAATGGTGGACAAAGTTGTGGATGTTGCTTGGCAGCTC 1536
||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1480 TCTGAATATGAAGTGTGTGTACCAATGGTGGACAAAGTTGTGGATGTTGCTTGGCGGCCC 1539
Query 1537 CAAGAGATGCCAAATGCTTCCGAAGGTCCGCAATATACATCAAGTTTGGGAAAAATAGGA 1596
| ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1540 CGAGAGATGTCAAATGCTTCTGAAGGTCCGCAATATTCATCAAGTTTGGGAAAAATAGGA 1599
Query 1597 TCGGTTCGTCATATCTGGAG-TTGGCTAACTGCGTTCTTCATAAGCTTTTTCACACTCCT 1655
|| ||| |||| || ||||| || ||||||||||||||||||| ||||| |||||||||
Sbjct 1600 TCAGTTAGTCACATATGGAGGTTT-CTAACTGCGTTCTTCATAAACTTTTCCACACTCCT 1658
Query 1656 TGCGTCTCTGGCTCTGCCACAGACTAAAGAACACTCACAGTTGCATTCTTCAAGCGTTAG 1715
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1659 CGCGTCTCTGGCTCTGCCACAGACTAAGGAACACTCACAGTTGCATTCTTCAAGCGCTAG 1718
Query 1716 AGCTGAGCTGTGTGATGAACGAATTGCAAGGGAATCTCGTCCTCCTTCGCCTCCTCGTTC 1775
||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1719 AGCCGAGCTGTGTGATGAACGAATAGCAAGGGAATCTCGTCCTCCTTCGCCTTCTCGTTC 1778
Query 1776 AACTATCACTGAAAGAGTTATCATTTCCTCTGTTTTAAGCAGACTAGGCGATCTTGAGAA 1835
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1779 AACAATCACTGAAAGAGTTATCATTTCCTCTGTTTTAAGCAGACTTGGCGATCTTGAGAA 1838
Query 1836 ACAGATAGAAAATCTTCACTCAAGGAAATCCGAGATGCCTCACGAGAAAGAGGAGTTGCT 1895
||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| || |
Sbjct 1839 ACAGATAGAAACTCTTCACTTAAGGAAATCCGAGATGCCTCAAGAGAAAGAGGAGCTGTT 1898
Query 1896 GAATGCTGCTGTATATCGTGTGGATGCACTAGAAGCAGAGCTCATCACCACGAAGAAGGC 1955
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1899 GAATGCTGCTGTATATCGTGTGGATGCACTAGAAGCAGAGCTCATCACCACGAAAAAGGC 1958
Query 1956 ATTACATGAGGCTTTAATAAGGCAAGAAGAACTTTTGGGTTACATAGACCGGCAAAAGGA 2015
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1959 ATTACATGAGGCTTTAATGAGGCAAGAAGAACTTTTGGGTTACATAGACCGGCAAGAGGA 2018
Query 2016 AGCTAAGTGCCGGAGAAAGAAGTTCTGCTGGTGAAGAACTCAAGCTTGGGAGGTAATTAG 2075
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2019 AGCTAAGTACCGGAGAAAGAAGTTCTGTTGGTGAAGAACTCGAGCTTGGGAGGTAATTAG 2078
Query 2076 CAAATATTGCTTGTTCAGGGATCTGATTAAAAACCATGAACATTGACACAAGTAGGTCTG 2135
|||||| ||||||||||||||| |||||| | | || || ||||||||
Sbjct 2079 CAAATAGTGCTTGTTCAGGGATGAGATTAA---C-A----CA---AC-----TAGGTCTG 2122
Query 2136 AAAGCAAATATCTCTGTTGAAACCTAAT---GTATATAAA-TATAAGaaaaaaaCTTGCA 2191
|||||||||||||||||||| ||||||| ||||||||| |||||||||||| || |||
Sbjct 2123 AAAGCAAATATCTCTGTTGATACCTAATAATGTATATAAAATATAAGAAAAAA-CTCGCA 2181
Query 2192 ATGAGATTTCAATTTCATCTCTTTTTTGTTGAATTTGTTTGATACTATTGGATAGTGTGA 2251
|||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||
Sbjct 2182 ATGAGATTTCAATTTCATCTCTTTCTTGTTGAATTTGCTTGATACTATTGGATTGTGTGA 2241
Query 2252 TTAATTGGTGTTTGGGACATTGGATTC 2278
|||||| || ||| ||||||||||||
Sbjct 2242 ATAATTGCTGCTTGTGACATTGGATTC 2268
> Ahg476682 jgi|Araly1|476682|fgenesh2_kg.2__1812__AT1G75370.1
Length=2124
Score = 1153 bits (624), Expect = 0.0
Identities = 1475/1866 (79%), Gaps = 137/1866 (7%)
Strand=Plus/Plus
Query 264 CAA-CAATGGTGAGAAAAGAGAAAAGAAG-TCAGATTTCGAAGTTTCGGAGGATGAGAAG 321
||| ||||| ||||| ||||| || | || ||||||||||||||||| ||||||||||||
Sbjct 143 CAAGCAATGATGAGAGAAGAG-AACGGAGATCAGATTTCGAAGTTTCTGAGGATGAGAAG 201
Query 322 AAAACTAGAATTGGTGGAA-TTC---TT-AAGAAGAAA--T-C---ATCCAAAAGCAAA- 369
||||| |||| | | |||| ||| || ||||||||| | | | | |||||||
Sbjct 202 AAAACAAGAA-TCG-GGAATTTCAATTTCAAGAAGAAAGCTGCGAAAGCTTCAAGCAAAC 259
Query 370 TTCAGACATTCCCT---GAAG--AGG-AG-AG--GGAGCAGAAGCATTGACCGGACTCTT 420
|| |||||||| | |||| ||| || || |||| ||||||| ||| || | | ||
Sbjct 260 TT-AGACATTCGTTGAAGAAGAAAGGTAGTAGTAGGAGAAGAAGCAGTGATCGTAAT-TT 317
Query 421 -TCGCTTACCTTTGAAGACATACATGATGCTGAAGAATTAAGATATGTCT-CTGAATTCC 478
|| |||||| ||||||| || || |||| ||| ||||| || ||| | ||||||||
Sbjct 318 CTCTCTTACCATTGAAGATATTCACGATGTTGAGGAATTGCGAGCTGT-TGATGAATTCC 376
Query 479 GACAA-TCACTTATCTCTGATCATTTACTGCCTCCAAAC-CTTGATGATTATCACATCAT 536
| || | ||| ||||||| |||| || ||||| || ||||||||||||||||| ||
Sbjct 377 G-TAATTTACTCGTCTCTGAGAATTTGCTTCCTCC-TACACTTGATGATTATCACATTAT 434
Query 537 GTTGAGATTCCTCTTCGCTAGGAAATTTGAT-CTAGGAAAAGCAAAGTTAATGTGGACTA 595
|||||||||| | ||||||||||||||| | |||||| | ||||||||||||| ||
Sbjct 435 GTTGAGATTCTTGAAAGCTAGGAAATTTGATATTGGGAAAA-CCAAGTTAATGTGGAGTA 493
Query 596 ACATGATCCAATGGAGAAGGGATTTTGGCACAGACACAATCTTGGAGGACTTTGAGTTTC 655
| ||||| |||||||||| |||||||| || ||||| || || ||||| ||||| |||
Sbjct 494 ATATGATTCAATGGAGAAAAGATTTTGGTACTGACACCATTTTCGAGGATTTTGAATTTG 553
Query 656 CTGAGTTGGATGAGGTTCTCAGGTACTACCCTCAGGGATATCATGGTGTTGATAAGGAAG 715
||||| ||||| ||| | | ||||||||||| || |||||||||||||| || ||||
Sbjct 554 AAGAGTTTGATGAAGTTATGAAATACTACCCTCATGGTTATCATGGTGTTGACAAAGAAG 613
Query 716 GAAGACCTGTTTACATCGAAAGATTAGGAAAAGTCGACGCAAG-CAAACTCATGCAAGTC 774
|||||||||||||||| |||||||||||| ||| || | | ||| ||||||||||||
Sbjct 614 GAAGACCTGTTTACATTGAAAGATTAGGACTAGTTGA-TCCGGCCAAGCTCATGCAAGTC 672
Query 775 ACTACATTGGAAAGGTACCTGAGGTATCATGTTAAAGAGTTTGAGAAGACTATC-ACTGT 833
||||| ||||| | | | |||||||||||| ||||||||| || |||||| || |
Sbjct 673 ACTACGGCCGAAAGATTCATAAGGTATCATGTTCGAGAGTTTGAAAAAACTATCAAC-AT 731
Query 834 CAAGTTTCCTGCTTGCTGCATTGCTGCTAAGAGACACATTGACTCCAGTACAACAATCCT 893
||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 732 TAAGCTTCCAGCTTGCTGCATTGCTGCTAAGAGACACATTGACTCTAGTACAACAATTCT 791
Query 894 AGATGTCCAAGGCCTGGGCTTGAAAAATTTCACTAAAACTGCTCGGGATCTTATAATCCA 953
||| ||||||||| |||| || || |||||| |||| |||| ||||||| ||||| ||
Sbjct 792 AGACGTCCAAGGCGTGGGGTTCAAGAATTTCTCTAAGCCTGCGAGGGATCTCATAATACA 851
Query 954 GTTGCAAAAGATTGATAGTGATAACTACCCTGAGACACTTCACCGTATGTTTATCATCAA 1013
| ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 852 GCTGCAAAAGATTGATAATGATAACTACCCTGAGACACTTCATCGTATGTTCATCATCAA 911
Query 1014 TGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCG-TTTCTTGATCCAAAGA 1072
|| |||||||||||||||||| |||||| ||| |||||| | |||||||||||||| |
Sbjct 912 TGGTGGTTCTGGTTTTAAGCTAGTTTGGGCCACAGTGAAA-CAATTTCTTGATCCAAAAA 970
Query 1073 CTGTCTCCAAAATACATGTCCTTGGGAACAAGTACCAGAACAAATTACTTGAGATGATTG 1132
| ||| | || || |||||| |||| ||||||||||| ||||||||||||||||| ||||
Sbjct 971 CGGTCACGAAGATTCATGTCATTGGTAACAAGTACCAAAACAAATTACTTGAGATAATTG 1030
Query 1133 ATGCAAGCCAGCTGCCAGATTTT-TTCGGTGGTACTTGCACTTGTGCAGATC-AGGGAGG 1190
||||||||||||||||||||||| || ||||| |||||||| |||||||||| ||| ||
Sbjct 1031 ATGCAAGCCAGCTGCCAGATTTTCTT-GGTGGCACTTGCACCTGTGCAGATCGAGGT-GG 1088
Query 1191 TTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAGATGGGCCGCAG 1250
|||||||||||||||||||||||||||||| ||| |||||||| |||||||| | ||
Sbjct 1089 TTGTATGAGATCTGATAAAGGGCCCTGGAATGACCCTGAGATATTAAAGATGCTTCAAAG 1148
Query 1251 TGGTGGGAC-G-TTCTGTAGGCATGCTG-GTGCTTTCCTAAGCAGTGATTCCCAAATATC 1307
|||||| || | || || |||||| | | ||| | ||| |||| ||||| | ||
Sbjct 1149 TGGTGG-ACCGCTT-TGCAGGCATAATTCG-GCT--C-TAAACAGTTTTTCCCGTGTGTC 1202
Query 1308 TTCAT-CGGATAAGCCAACTTATTC-GT--TGAAAGTTAGTGACACCTCAACAGCA-AAG 1362
|||| || |||||||| ||| ||| | | ||||||||||||||||| |||||| ||
Sbjct 1203 CTCATGCG-ATAAGCCATCTTTTTCTGGGATAAAAGTTAGTGACACCTCGACAGCAGAA- 1260
Query 1363 TCAGGGTCTGAATTGGAAGAGATGGCTTCACCGAAAAC-AAATACGA-ACAATCATGTAC 1420
|||||||||||| |||||||||||||||| || |||| ||||| || | | || ||| |
Sbjct 1261 TCAGGGTCTGAAGTGGAAGAGATGGCTTCTCC-AAAAGTAAATA-GAGAGATTCGTGTTC 1318
Query 1421 CCAAGTTAACTCCTGTTTCTGAA--TAT--G--CCAATGGTA-A-CATAAGTCCTACTGT 1472
||||| | |||||||||| |||| ||| | ||||| || | |||| ||||||||
Sbjct 1319 CCAAGCTGACTCCTGTTTGTGAAGATATTTGGGCCAATACTATATCATA--TCCTACTGA 1376
Query 1473 TTTATCTGAGTATGAAGAATGTGTACCAATGGTGGACAAAGTTGTGGATGTTGCTTGGCA 1532
|| ||| |||||||| | | |||||||||||||||||||||||||||||||||| |
Sbjct 1377 TTCATCAGAGTATGA----T-TC-ACCAATGGTGGACAAAGTTGTGGATGTTGCTTGG-A 1429
Query 1533 -G-CTCCAAGAGATGCCAAATGCTTCCGAAGGTCC-GCAATATACATCA-AGTTTGGGAA 1588
| | ||| || | |||||| ||||| ||||| | | | |||||| | | |||||| |
Sbjct 1430 TGGC-CCATGAAAAGCCAAAGGCTTCAAAAGGTTCAG-AGTATACACCCGA-TTTGGGCA 1486
Query 1589 AAATAGGATCGGTT-CGTCATATCTGGAGTTGGCTAACTGC-GTTCTTCAT-AAGCTT-T 1644
|||||||||||||| | | |||||||||| ||||||| || ||||||| | || ||| |
Sbjct 1487 AAATAGGATCGGTTACTT-ATATCTGGAGGTGGCTAA-TGATGTTCTTCGTTAA-CTTGT 1543
Query 1645 TTCACACTCCTTGCGTCTCTGGCTCTGCCACAGACTAAAGAACACTCACAGT-TGCATTC 1703
|| || || || ||| ||||||||||||||| | ||| |||||| |||| || || |
Sbjct 1544 TT-ACGCTTCTCATATCTGTGGCTCTGCCACAGAGTGAAGGACACTCCCAGTCTGAAT-C 1601
Query 1704 TTCAAGCGTTAGAGCTG-AGCTGTGTGATGAACGAATTGCAAGGGAATCTCGTCCTCCTT 1762
|||| | || || || | | | |||| | | | | | |||||||||||||
Sbjct 1602 TTCA-G-GT--GA--TGGACC------A--AACGC-TAG-A-GAG--TCTCGTCCTCCTT 1642
Query 1763 CGCCTCCTCGTT-CAACTATCACTGAAAGAGTTATCATTTCCTCTGTTTTAAGCAGACTA 1821
| || || || ||||||| | || ||| | | |||| |||||| ||| |||||||
Sbjct 1643 CACCGGCTT-TTGCAACTATGGCAGAGAGAAATGTGTTTTCTTCTGTTGTAAACAGACTA 1701
Query 1822 GGCGATCTTGAGAAACAGATAGAAA-ATCTTCACTC-AAG-GAAATCCGAGATGCCTCAC 1878
|| ||||||||||||||| |||||| | || ||||| ||| || || ||||||||||
Sbjct 1702 GGAGATCTTGAGAAACAGGTAGAAACA-CTGCACTCGAAGCGACAT--GAGATGCCTCGT 1758
Query 1879 GAGAAAGAGGAGTTGCTGAATGCTGCTGTATATCGTGTGGATGCACTAGAAGCAGAGCTC 1938
||||||||||||||||| || | ||||| ||||| ||||||||||| ||||||||||||
Sbjct 1759 GAGAAAGAGGAGTTGCTTAACACAGCTGTTTATCGCGTGGATGCACTTGAAGCAGAGCTC 1818
Query 1939 ATCACCACGAAGAAGGCATTACATGAGGCTTTAATAAGGCAAGAAGAACTTTTGGGTTAC 1998
||| | || || ||||| ||||||||||||||||| || ||||| || ||||||| ||||
Sbjct 1819 ATCGCTACAAAAAAGGCTTTACATGAGGCTTTAATGAGACAAGATGATCTTTTGGCTTAC 1878
Query 1999 ATAGACCG-GCAA-AAGGAAGCTAAGTG-C-CG-GAGAAAGAAGTTCTGCTGGTGAAGAA 2053
|||||||| | || ||| | | |||| | | || ||||||| | ||||||||||||
Sbjct 1879 ATAGACCGTG-AAGAAG-ATGAGAAGTATCACAAGAAAAAGAAGGTGTGCTGGTGAAGA- 1935
Query 2054 CTCAAG 2059
|| |||
Sbjct 1936 CTGAAG 1941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85779231740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5