BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19660.1
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472192 jgi|Araly1|472192|fgenesh2_kg.1__2146__AT1G19660.1 1938 0.0
Ahg476684 jgi|Araly1|476684|fgenesh2_kg.2__1814__AT1G75380.2 928 0.0
> Ahg472192 jgi|Araly1|472192|fgenesh2_kg.1__2146__AT1G19660.1
Length=1358
Score = 1938 bits (1049), Expect = 0.0
Identities = 1256/1352 (93%), Gaps = 30/1352 (2%)
Strand=Plus/Plus
Query 42 TGCTCTTTGTTGATCTGTCTGTGTGGGATTCTTCCTTTAGTTCCTCTGTTGATCTATCCA 101
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 29 TGCTCTCTGTTGATCTGTCTGTGTGGGATTCTTCCTTTAG-TCCTCTGTTGATCTATCCA 87
Query 102 ATCGAATCTTACGAAAA-TTTTCGAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTG 160
||||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 88 GTCGAATCTTAC-AAAATTTTTAGAGTGAAGATGAGGTCGCTTCAAGCACCGATTGTTTG 146
Query 161 CCCTAGTGTTCGTCCCAGACAATTGGGTGTCTCTGCTTTACTTGTCAACTGCTCTGTTTC 220
||||||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 147 CCCTAGTGTTCGTCCTAGACAACTGGGTGTCTCTGCTTCACTAGTCAACTGCTCTGTTTC 206
Query 221 GAAAACTAGGAGTCTCAGAAAACAATTCTGGGGTAACCAGACCAAAAATGACAAGTCTCA 280
|||||||||||||||| |||| |||||||||||||| ||||||| ||||| |||||||||
Sbjct 207 GAAAACTAGGAGTCTCGGAAACCAATTCTGGGGTAATCAGACCAGAAATGTCAAGTCTCA 266
Query 281 GGCTGCTACAGTGAATCTTCGTCTGCATCTTCGGAGGTATAAGAGTATCA-AATGTCTTT 339
|| |||||||||||||| | || | |||||||| ||||||||| | |||||||||
Sbjct 267 GGTTGCTACAGTGAATC-T--TC-G-----TCGGAGGTCTAAGAGTAT-ACAATGTCTTT 316
Query 340 TCAGCTCGCACTCTGATGGTACCGGAAGCACAGCAGAGAATTTCAACGAGAACGATGAGG 399
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TCAGCTCGCATTCTGATGGTACCGGAAGCACAGCAGAGAATTTCAACGAGAACGATGAGG 376
Query 400 ATTATGTCAAGTCTAGTGTATTGGAAGCTGTTGAGGTAAAAAGTGGACCAGATGGTTTCA 459
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 377 ATTATGTTAAGTCTAGTGTATTGGAAGCTGTTGAGGTAAAGAGTGGACCAGATGGTTTCA 436
Query 460 TGGTGAAGATGAAGGATGGGAGGCAACTTCGATGTGTCCACAATAATCCTCAAGGAGGGA 519
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 437 TGGTGAAGATGAAAGATGGGAGGCAACTTCGATGTGTTCACAATAATCCTCAAGGAGGGA 496
Query 520 ATCTTCCAAATTATGCTCCACATTCTGCAATTGTGCTGAAAATGGAAGATGGAACTGGTC 579
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 497 ATCTCCCAAATTATGCTCCACATTCTGCAATTGTGCTGAAAATGGAAGATGGAACGGGTC 556
Query 580 TTCTTCTCCCCATTATCGTCTTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAA 639
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 557 TTCTTCTTCCTATTATCGTCTTGGAGATGCCTAGTGTGTTACTTATAGCAGCAATGACAA 616
Query 640 ATGTTCAAATAGCAAGGCCCACTATGTATCAAGTGGTGAAGGACATGGTAGACAAAATGG 699
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 617 ATGTTCAAATAGCAAGACCCACTATGTATCAAGTGGTGAAGGAGATGGTAGACAAAATGG 676
Query 700 GTTATGAGGTTAGGCTTGTTAGAGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGT 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GTTATGAGGTTAGGCTTGTTAGAGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGT 736
Query 760 TATACCTTTCAAAGGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTG 819
||||||||||||||||||| |||||| ||| || || ||||| ||||||||||||||||
Sbjct 737 TATACCTTTCAAAGGTGGGTAATAAGTTGGAGTGCGTTAGCTTTGATCTTCGTCCTTCTG 796
Query 820 ATGCAATTAATATAGCTGTTAGATGCAAGGTACCTATTCAAGTCAACAAGTATCTAGCTT 879
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 797 ATGCAATTAATATAGCTGTGAGATGCAAGGTACCTATCCAAGTCAACAAGTATCTAGCTT 856
Query 880 ATAGTGATGGAATGAGAGTCATCGATTCCGGAAAGCTATCAAAGCAAACACCTGCTTCTG 939
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 857 ATAGTGATGGAATGAGAGTCATCGATTCCGGAAAGCTATCAAAGCAAACACCTGCTTCAG 916
Query 940 ATGGTTTATTGTTTACTGAACTAGACCGGCCAAATGGTCAGCCTTGTTTTGATACAAAAG 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 ATGGTTTATTGTTTACTGAACTAGACCGGCCAAATGGTCAGCCTTGTTTTGATACAAAAG 976
Query 1000 AGTTCGATCTAGTAAGGAACATGATGCAAGCTGTTGATGAAGAACGGTATGATGAAGCCG 1059
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 AATTCGATCTATTAAGGAACATGATGCAAGCTGTTGATGAAGAACGGTATGATGAAGCCG 1036
Query 1060 CTGAGTGGAGAGACAAGCTTGGCAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACAT 1119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTGAGTGGAGAGACAAGCTTGGCCAGTTTCAGGCAAAACGCAAATTAAGGAAATACACAT 1096
Query 1120 GACAGCTCGCAGACGGGAG-T-GTTTTTAA-TACATAATTTATGTAAATAATAAAGAAGC 1176
||||| | | | | || | | || |||||||| ||||||||||||||||||||
Sbjct 1097 GACAGGTAT-A-ATGC-AGCTCGCAGACAAATACATAATGTATGTAAATAATAAAGAAGC 1153
Query 1177 CA-TTGCCATTTGCCAGAAGTTGTGATCATGAAGAAAAATATCTCTCTCGTATGA-GATA 1234
|| |||||||||||| |||| ||| ||||||||||||||||||||||| |||| | ||||
Sbjct 1154 CAATTGCCATTTGCC-GAAGCTGTAATCATGAAGAAAAATATCTCTCTAGTAT-ATGATA 1211
Query 1235 TACTTTTCTCTATCGACACTTGTGCACGTAGTTGATTCTCAAGGAACGGACAAAATAAAA 1294
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1212 --CTTTTCTCTATCTACACTTGTGCACGTAGTTGATTCTCAAGAAACGGACAAAATAAAA 1269
Query 1295 ATGTTATTTTATAATTGTAGCGTGATGGTGATGTGATGTGTACA-TATACATTAATCTTC 1353
| | || | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1270 AAAATGTTATGTAATTGTAGCGTGATGGTGATGTGATGTGTACAATATACATTAATCTTT 1329
Query 1354 TGTAATAATATATGGTAAGCCTACGCTTTCTC 1385
|||||| ||| |||||||||| || |||||
Sbjct 1330 TGTAATG-TAT--GGTAAGCCTAAGCCTTCTC 1358
> Ahg476684 jgi|Araly1|476684|fgenesh2_kg.2__1814__AT1G75380.2
Length=1431
Score = 928 bits (502), Expect = 0.0
Identities = 841/1002 (84%), Gaps = 33/1002 (3%)
Strand=Plus/Plus
Query 129 AAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAG-TGTTCGTCCCAGACAATTGGG 187
||||||| |||||||||||||| |||||||| ||| | ||||||| |||||| | ||
Sbjct 168 AAGATGAAATCGCTTCAAGCACCAGTTGTTTGTCCT-GCAATTCGTCCAAGACAAGTAGG 226
Query 188 TGTC-TCTGCTTTACTTGTCAACTGCTCT-GTTTCGAAAACTAGGAGTCTCAGAAAACAA 245
|| | | ||||| |||||| |||| | || || | | |||| || |||| ||||
Sbjct 227 TG-CATGTGCTTCACTTGTTAACTACACTGGTCT-G-AAAC-------CT-AGAAGACAA 275
Query 246 TTCTGGGGTAACCAGACCAAAA-ATGACAAGTCTCA-GGCTGCTA-CAGTGAATCTTCGT 302
||||||||||| | || ||||| | ||||||||| ||| | | || |||| | |
Sbjct 276 TTCTGGGGTAATCGGA-CAAAAGGTTTCAAGTCTCAGGGC-ACCACCA--CAATC-AC-T 329
Query 303 CTGCATCTTCGGAG-GTATAAGAGTATCAAATGTCTTTTCAGCTCGCACTCTGATGGTAC 361
|| | || | | | | ||||||||||| ||| |||||||||| |||||||||||||
Sbjct 330 CT-TAGATT--GTGCG-ACAAGAGTATCAAGTGTGTTTTCAGCTCTCACTCTGATGGTAA 385
Query 362 CGGAAGCACAGCAGAGAATTTCAACGAGAACGATGAGGATTATGTCAAGTCTAGTGTATT 421
|||||||| ||||||||||| || ||||| |||||||| ||||| || ||||||||| |
Sbjct 386 TGGAAGCACTGCAGAGAATTTTAATGAGAATGATGAGGAATATGTTAACTCTAGTGTAGT 445
Query 422 GGAAGCTGTTGAGGTAAAAAGTGGACCAGATGGTTTCATGGTGAAGATGAAGGATGGGAG 481
|||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||
Sbjct 446 GGAAGCTGTTGAAGTAAAAAGTGGAGCAGATGGTTTCATGGTGAAGATGAGGGATGGTAG 505
Query 482 GCAACTTCGATGTGTCCACAATAATCCTCAAGGAGGGAATCTT-CCAAATTATGCTCCAC 540
||||| ||||||||||| || ||||||||||||||| || || ||| |||||||||| |
Sbjct 506 ACAACTACGATGTGTCCATAACAATCCTCAAGGAGGGCAT-TTACCAGATTATGCTCCTC 564
Query 541 ATTCTGCAATTGTGCTGAAAATGGAAGATGGAACTGGTCTTCTTCTCCCCATTATCGTCT 600
| |||| |||||| |||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 565 ACCCTGCTATTGTGTTGAAAATGGAAGATGGAACTGGTCTTCTCCTTCCCATTATCGTGT 624
Query 601 TGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAAATGTTCAAATAGCAAGGCCCA 660
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct 625 TGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACCAATGTCCAAATTGCAAGACCCA 684
Query 661 CTATGTATCAAGTGGTGAAGGACATGGTAGACAAAATGGGTTATGAGGTTAGGCTTGTTA 720
| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||
Sbjct 685 CCATGTATCAAGTGGTGAAGGAGATGGTGGACAAGATGGGTTATGAAGTTAGACTTGTTA 744
Query 721 GAGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGGTGGGGG 780
|||| |||| ||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 745 GAGTCACCAAAAGAGTTCACGAGGCGTATTTTGCCCAGTTATACCTTTCAAAGGTGGGTA 804
Query 781 ATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCAATTAATATAGCTGTTA 840
|| ||||| ||||||||||| |||||| | ||||| |||||||| ||||| |||||||
Sbjct 805 ATGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCAATCAATATCGCTGTTA 864
Query 841 GATGCAAGGTACCTATTCAAGTCAACAAGTATCTAGCTTATAGTGATGGAATGAGAGTCA 900
|||||||| ||||||| ||||| |||||||| || || ||||||||||||||||||||||
Sbjct 865 GATGCAAGATACCTATCCAAGTGAACAAGTACCTTGCATATAGTGATGGAATGAGAGTCA 924
Query 901 TCGATTCCGGAAAGCTATCAAAGCAAACACCTGCTTCTGATGGTTTATTGTTTACTGAAC 960
| || || || ||| |||||| || ||||| ||||| ||||||||||| ||||||||||
Sbjct 925 TTGAGTCTGGGAAGATATCAACGCCGACACCAGCTTCAGATGGTTTATTATTTACTGAAC 984
Query 961 TAGACCGGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAGTTCGATCTAGTAAGGAACA 1020
|||||| || ||||||||| ||||| ||||||| ||||||||| || | | || || |
Sbjct 985 AAGACCGACCTAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAAA 1044
Query 1021 TGATGCAAGCTGTTGATGAAGAACGGTATGATGAAGCCGCTGAGTGGAGAGACAAGCTTG 1080
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1045 TGATGCAAGCTGTTGATGAAGAGCGATATGATGAAGCCGCTGAGTGGAGAGACAAGCTTG 1104
Query 1081 G-CAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGA 1121
| || ||||| ||| || || || | |||||||||||||||
Sbjct 1105 GTCA-GTTTCGGGCCAAGCGTAACCTGAGGAAATACACATGA 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52793079570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5