BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19680.1 Length=1805 Score E Sequences producing significant alignments: (Bits) Value Ahg472194 jgi|Araly1|472194|fgenesh2_kg.1__2148__AT1G19680.1 1927 0.0 Ahg926923 jgi|Araly1|926923|scaffold_202484.1 568 7e-161 > Ahg472194 jgi|Araly1|472194|fgenesh2_kg.1__2148__AT1G19680.1 Length=1689 Score = 1927 bits (1043), Expect = 0.0 Identities = 1358/1504 (90%), Gaps = 45/1504 (3%) Strand=Plus/Plus Query 281 TTTAAGGATTATGGGGTCTGTTTGCTGTGTGGCTGCAAAGGACAGAAATGTTCCCAGTGG 340 |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| Sbjct 224 TTTAAGGATTATGGGGTCTGTTTGCTGTGTGGCTGCAAAGGATAGAAATCTTCCTAGTGG 283 Query 341 AGCTATTGATAATTCAGTGTGTTCACCATCGTGGAGTTTTCGACGGGACAACAGGAGGCG 400 ||||||| ||||| ||||||| |||||| |||||||||||||| |||||||||||||||| Sbjct 284 AGCTATTCATAATCCAGTGTGCTCACCACCGTGGAGTTTTCGATGGGACAACAGGAGGCG 343 Query 401 TGTAGCTGATGAGATTAAAGATTCATCTAATCATAATGTTGGGAGTAGAGGTATTGACAT 460 |||||||||||| |||||||| | || ||| | | | | | | | || Sbjct 344 TGTAGCTGATGAAATTAAAGA-T--TC--ATC-T-A-------A-T-----CA-T-A-AT 380 Query 461 CGATAAGTTGTCGTTAGGCTTAGAGAGAGGACCTCCGTCATCTGAAACTGGGGGTTTAGC 520 ||||||||||||||||| ||||||||||||||| | ||||||||| ||| |||||| Sbjct 381 -GATAAGTTGTCGTTAGGGTTAGAGAGAGGACCT-C--CATCTGAAA---GGGATTTAGC 433 Query 521 TACTCTTGGCTCTCAGAAATCC-GCAGACTCAGAGATGGGCACAGCTTCGATGGTTACAG 579 || || || |||||| ||| || |||||||||||||||||||||||||||||| |||| | Sbjct 434 TATTCCTGCCTCTCATAAA-CCTGCAGACTCAGAGATGGGCACAGCTTCGATGATTACGG 492 Query 580 CTCCTTTAGCGGGTACAAGTTTGGCGATTCGATCTCCTTCAGATGTATCCTTGGCAAGTC 639 |||||||| | || | ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 493 CTCCTTTAACTGGCAAAAGTTTGGCGATTCGATCTCCTTCAGATGTATCCTTGATAAGTC 552 Query 640 CTGTTCGTGTTGAGGTGAAGAATATAGTTGACTCATCAGATATTGTTTCATCAGTTTTAC 699 |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 553 CTGTTCATGTTGAGGTGAAGAATATAGTTCACTCACCAGATATTGTTTCATCAGTTTTAC 612 Query 700 CAAATCCGTCAAGTTCCACCTCGGTCTCTGATCTTCCTTCAGCTCACACACATTCACTTC 759 ||||||| ||||||||||||||||||||||||||||| || | || ||||||||| |||| Sbjct 613 CAAATCCTTCAAGTTCCACCTCGGTCTCTGATCTTCCATCGGGTCTCACACATTCGCTTC 672 Query 760 CTCCCAGATCAACTCCGTCTAGACGTGCTCGAGGTTCACCTGGGCAGCAGTTGTTTAGGC 819 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 673 CTCCCAGATCAACTCCAACTAGACGTGCTCGAGGTTCACCTGGGCAGCAGTTGTTTAGGC 732 Query 820 AGGTTTCTGATAGTCAAACTTTGGGATTGAAATCTCCCAATAATTACTCAACATCTGAAG 879 |||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||||| Sbjct 733 AGGTTTCTGATAGTCAAACTTTGGGACTGAAATCACCCAACAATTACTCAATATCTGAAG 792 Query 880 GAAGGTCGTCCTTTGTGCTTTCGACCTGTAGTAATGACACTGCCACTGGGTCCCATTTTG 939 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 793 GAAGGTCGTCCTTTGTGCTTTCGACCTGTAGTAATGACACTGTCACTGGGTCCCATAATA 852 Query 940 CTTCTTCTGAAGGTGGCTGGTCCATAAACGCCTTTTGTGAGCTCGTGGCTCAGTCTCAAA 999 ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| Sbjct 853 CTTCTTCTGAAGGTGGCTGGTCCATGAACGCCTTTTGTGAGCTCGTGTCTCAATCTCAAA 912 Query 1000 GGGAGAGATGGTCTTTTGATAATGAGCACTTAGGTTCCGGACGACGAAGACTAAGTGGGT 1059 ||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 913 GGGAGAGATGGTCGTTTGATAGTGAGCACTTAGGTTCTGGAATACGAAGACTAAGTGGGT 972 Query 1060 GTAGTAGTAGCAGATTCTCATGCTCCCCTTCTGTTGATCAGCAGACTTGTGGGCGTTGCT 1119 ||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||| Sbjct 973 GTAGTAGTAGCAGATTCTCGTGCTCCCCTTCTGTAGATCGGCAGACTTGTGGGAATTGCT 1032 Query 1120 CAAAGCTTTTAACTGAAAGGTCTCCAGTTGCCAGGTTTGACCTTCCAATTCCTGCTGTTC 1179 |||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||| Sbjct 1033 CAAAGCTTTTAACTGAGAGGTCTTCAATTGCCAGGTTTGACCTTCCAATTTCTGCTGTTC 1092 Query 1180 TAGCGTGCGGCCATGTTTACCATGCGGCATGCTTAGAGACAATGACAAATGAAACAGAGA 1239 ||||||| ||||||||||||||||| | |||||||||||||||||||| ||| ||||||| Sbjct 1093 TAGCGTGTGGCCATGTTTACCATGCAGAATGCTTAGAGACAATGACAAGTGAGACAGAGA 1152 Query 1240 AGTATGATCCTACGTGTCCCATATGCACAGAGACACAGGTTACTAAATTATCGAGGAAAG 1299 ||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||||| Sbjct 1153 AGTATGATCCTACATGTCCCATATGCGCAGAGACGCAAGTTACTAAATTATCGAGGAAAG 1212 Query 1300 CTCTAAAAGCCGAGGCA-GAATTGAAGGCAACGAGTTACAAAAGGTGTAAGAACCGTGTG 1358 ||||||| || ||| || |||||||||||||||||||||||||| |||||||||| |||| Sbjct 1213 CTCTAAAGGCGGAG-CAAGAATTGAAGGCAACGAGTTACAAAAGATGTAAGAACCATGTG 1271 Query 1359 GTAGATAGTTATGTCCGCAGTGAATGTGAGGATCTTATGTTCCAGAATCTAGGGAAACGA 1418 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| Sbjct 1272 GTAGATAGTTATGTCCGCAGTGAATGTGAGGATCTTGTGTTCCAGAAACTAGGGAAGCGA 1331 Query 1419 GAAGGAAAAGGTCTGAAGATGGATCCTAGTTCGAA-TACCAAAGGCTCCACGTCTAAGTC 1477 |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||| Sbjct 1332 GAAGGAAAAGGTCTAAAGATAGATCCTAGTTC-AAGTACCAAAGGCTCCACGTCTAAGTC 1390 Query 1478 TTTTATGAAATGGCACTTCGGTTCCGTCAGCACCAAGTGGAGTAAAGCCAGGGATTCTAC 1537 ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1391 TTTTATGAAATGGCACTTCGGTTCCGTCAGCGCCAAGTGGAGTAAAGTCAGGGATTCTAC 1450 Query 1538 CTCGAAGAAGAGCTTTTGGTCCAGACATAGTAATAAAAGATTAAGTCATTCTTTTTCAAG 1597 ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||||| Sbjct 1451 CTCGAAGAAAAGCTTTTGGCCCAGACATAGTAATAAAAGATTAAGTCATACTTCTTCAAG 1510 Query 1598 CGTTGAGGGCCTTAATCAGGCAACATGACATAAAATAGGACTGGCTTTGGATTAGAGAAA 1657 ||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||| | Sbjct 1511 CGTTGAGAGCTTTAATCAGACAACATGACATAAAAGAGGACTGGCTTTGGATTAGAGAGA 1570 Query 1658 AGCTCCCTTAAACATTTTGTATCCCTTTTTACTTTTATTCCATGTTTAAATGTCACATGG 1717 || | |||| |||||||||||||||| || ||||||||| |||||| | |||||||||| Sbjct 1571 AGATGCCTTTAACATTTTGTATCCCTCTT--CTTTTATTC-ATGTTTCATTGTCACATGG 1627 Query 1718 GGAAAATA-TGTGTA--CCAATGAAACAAACTT-GTCATTTTGTAGAATGCAGAAGAAAC 1773 | | || |||||| ||| ||||||||| || ||||||||| ||||||||||||||| Sbjct 1628 G-ACAACGGTGTGTATACCAGTGAAACAAAATTTGTCATTTTGGAGAATGCAGAAGAAA- 1685 Query 1774 AAAA 1777 |||| Sbjct 1686 AAAA 1689 Score = 270 bits (146), Expect = 2e-71 Identities = 211/239 (88%), Gaps = 17/239 (7%) Strand=Plus/Plus Query 4 AAAAAGAAGAGAGGAAGGGTGACGTGGCACAATTTC-CCTGCGACGCACCCAACCTCCGt 62 |||||| ||||||||||||||||||||||| | ||| |||| ||||||||||||||||| Sbjct 1 AAAAAGGAGAGAGGAAGGGTGACGTGGCAC-AGTTCTCCTGTGACGCACCCAACCTCCG- 58 Query 63 ctctctctctctcAGATCGGCGGCCATCTCCGTCGAGTAATTGAAATCTCTCTCAGCCGT 122 |||||||||| | |||||||||||||||||||||||| ||||||||||| Sbjct 59 ---TCTCTCTCTC---T-------CATCTCCGTCGAGTAATTGAAATCGCTCTCAGCCGT 105 Query 123 TGGATTCGAATTCCGCCGCATCTTCATATACCTCGTTTCAATCCTGCGGAACCCTAGTTG 182 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 106 TGGATTCGAATTCCGCCGTATCTTCATATACCTCGTTTCAATCCTGCGGAACCCTAGTTG 165 Query 183 CTCTGAATTGTGGTTTGCTACTGTGATAAGTTCTTCAGTGGTAGATTAGGAAGCACCAC 241 ||| ||||||| || |||||||||||| |||||||| ||||| ||||||||||||||| Sbjct 166 ATCTTAATTGTGATT-GCTACTGTGATACGTTCTTCAATGGTAAATTAGGAAGCACCAC 223 > Ahg926923 jgi|Araly1|926923|scaffold_202484.1 Length=1408 Score = 568 bits (307), Expect = 7e-161 Identities = 706/888 (80%), Gaps = 69/888 (8%) Strand=Plus/Plus Query 728 TGATCTTCCTTCAGCTCACACACATTCACTTCCTCCCAGATCAACTCCGTCTAGACGTGC 787 ||||||| | || |||||||| | || |||||||| | ||| || || || ||||| || Sbjct 479 TGATCTTTCATCGGCTCACACGCGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGC 538 Query 788 TCGAG-GTTCACCTGGGCAGCAGTTGTTTAGGCAGGTTTCTGATAGTCAAA-CTTTGGGA 845 ||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||| || | Sbjct 539 TCG-GCGTTCACCTGGGCATCAGTTGTTTAGGCAGGTTTCTGATAGTCAAATCTTAGG-A 596 Query 846 TTGAAATCTCCCAA-TAAT--T-ACTCAA-CATCTGAAGGAAGGTCGTCCTTTGTGCTTT 900 ||||||| ||||| |||| | |||| | | || ||||||||||||||||||||||||| Sbjct 597 CTGAAATC-CCCAAATAATAATTACTCGATC-TCAGAAGGAAGGTCGTCCTTTGTGCTTT 654 Query 901 CGACCTGTAGTAATGACA-CTGCCACTGGGTCCCATTTTGCTTCTTCTGAAGGTGGCTGG 959 | |||||||| |||||| | |||||||| ||||| | || |||||||||||||||||| Sbjct 655 CAACCTGTAGCAATGACTTC-GCCACTGGATCCCAGTACGCATCTTCTGAAGGTGGCTGG 713 Query 960 TCCATAAACGCCTTTTGTGAGCTCGTGGC-TCAGTCTCAAAGGGAGAGATGGTCTTTTGA 1018 || || ||| | |||| |||||||||||| | | |||||||||||||||||||| ||||| Sbjct 714 TCTATGAACACTTTTTCTGAGCTCGTGGCGT-ATTCTCAAAGGGAGAGATGGTCCTTTGA 772 Query 1019 TAATGAGCACTTAGGTTCCGG-ACGACG-AAGACTAAGTGGGTGTAGTAGTAGCAGATTC 1076 || || ||||||||||| || | |||| || ||||||||| || |||| ||||||||| Sbjct 773 TAGCGAACACTTAGGTTCTGGCA-GACGGAA-ACTAAGTGG-TG--GTAGCAGCAGATTC 827 Query 1077 TCATGCTCCCCTTC--T-GTTGATCAGCAGACTTGTGG-GCGTTGCTCAAAGCTTT-TAA 1131 || | ||||||||| | ||||||||||||| |||||| || |||||||||| || ||| Sbjct 828 TCCTTCTCCCCTTCCATTGTTGATCAGCAGATTTGTGGAGC-TTGCTCAAAG-TTACTAA 885 Query 1132 CTGAAAGGTCTCC-AGTTGCCAGGTTT-GACCTTCCAATTC-CTGCTGTTCTAGCGTGCG 1188 | || |||||| | | |||||| ||| || || ||||| | |||||||||| ||||| | Sbjct 886 CCGAGAGGTCTTCTA-TTGCCAA-TTTCGAGCTCCCAAT-CGCTGCTGTTCTTGCGTGTG 942 Query 1189 GCCATGTTTACCATGCGGCA-TGCTTAGAGACAATGACAAATGAAACAGAGAAGTATGAT 1247 ||||||||||||| || | | ||||||||||| ||||| | || | ||||||||| ||| Sbjct 943 GCCATGTTTACCACGCAG-AGTGCTTAGAGACCATGACTACCGAGATAGAGAAGTACGAT 1001 Query 1248 CCTACGTGTCCCATATGCAC-A--G---AGACACAGGTTA-CTAAATTATCGAGGAAAGC 1300 ||| | |||||||||||||| | | ||| || ||| | | ||| || | |||||||| Sbjct 1002 CCTGCTTGTCCCATATGCACGATTGGGGAGAAACGGGT-AGCGAAAATAACAAGGAAAGC 1060 Query 1301 TCTAAAAGCCGAGGCAGAATTGAAGGCAACG-AGTTACAAAAGGTGTAAGAACCGTGTGG 1359 || ||||| ||||| ||| ||||||| | ||| ||||||| ||||| |||||||||| Sbjct 1061 CCTTAAAGCGGAGGCGGAAGCAAAGGCAAAGCAGT-ACAAAAGATGTAAAAACCGTGTGG 1119 Query 1360 TAGATAGTTATG-TCCGCAGTGAATGTGAGGA-TCTTATGTTCCAGAATCTAGG-GAAAC 1416 |||||||||||| | | |||||||| || || | || |||||||||| | || ||||| Sbjct 1120 TAGATAGTTATGGTGAG-AGTGAATGCGATGAGT-TTGTGTTCCAGAAAAT-GGAGAAAC 1176 Query 1417 GAGAAGGAAAAGGTCTGAAGATGGATCCTAGTTCGAA-TACCAA-AGGCTCCACGTC-TA 1473 ||||||| |||| ||| ||| |||| |||||| | | || ||| || ||| | | || Sbjct 1177 GAGAAGGCAAAGCTCTTAAGCTGGAAGCTAGTT-GCAGTAGCAAGAG-CTCGTC-TAATA 1233 Query 1474 AGTC-TT-TTATGAAATGGCACTTCGGTTCCGTCAGCACCAAGTGGAGTAAA-----G-C 1525 |||| || ||| ||||||||||| | ||| ||||| ||||||||| |||| | | Sbjct 1234 AGTCATTCTTA--AAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAATAAACCCTCGTC 1291 Query 1526 CAGGGATTCTACCTCGAAGAAGAGCTTTTGGTCCAGACATAGTAATAA 1573 || || ||| | | ||||||| | || ||||| |||||| ||||||| Sbjct 1292 CAAAGACTCTGCATTGAAGAAGGGGTTCTGGTCTAGACATCGTAATAA 1339 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67762545855 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5