BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19700.1 Length=2022 Score E Sequences producing significant alignments: (Bits) Value Ahg472196 jgi|Araly1|472196|fgenesh2_kg.1__2150__AT1G19700.1 3040 0.0 Ahg476691 jgi|Araly1|476691|fgenesh2_kg.2__1821__AT1G75410.1 634 0.0 > Ahg472196 jgi|Araly1|472196|fgenesh2_kg.1__2150__AT1G19700.1 Length=1998 Score = 3040 bits (1646), Expect = 0.0 Identities = 1910/2031 (94%), Gaps = 43/2031 (2%) Strand=Plus/Plus Query 2 TCTCTATCTCTCTCGGGATTGGGTCTCAAATCtttttttGTCTTCAACTGTTCGAAACTC 61 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 TCTCTATCTCTCTCGGGATTGGGTCTCAAATCTTTTTTTGTCTTCAACTGTTGGAAACTC 60 Query 62 TTCTGCTTTTGTGTTTCCTGATTCAGCCACATCCACACTCACAAACACAATCTCTAGGAT 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTCTGCTTTTGTGTTTCCTGATTCAGCCACATCCACACTCACAAACACAATCTCTAGGAT 120 Query 122 CTCATTTCCCGACCAAACTCATCGAACTAAGAACTCACTGTAATAAAACT-TTTAAAAGG 180 ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| | Sbjct 121 CTCATTTCCCGACCAAATTCATCGAACTGAGAACTCACTGTAATAAAACTAAAAAAAAAG 180 Query 181 TGTAAACACCAATGGCAGTTTATTACACAAGTAATGTCGGTTGTTACCAGCAAGAACCAA 240 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 -GTAAACACCAATGGCGGTTTATTACCCAAGTAATGTCGGTTGTTACCAGCAAGAACCAA 239 Query 241 TCTTTCTCAACCATCAACAACAAAACCAACAAGCTTCTTCTTCATCCGCCGCCGCTTCTT 300 |||||||||||||| |||| || ||||||||||||||||| |||||||||||||||| Sbjct 240 TCTTTCTCAACCAT---CAAC--AA-CAACAAGCTTCTTCTTCCTCCGCCGCCGCTTCTT 293 Query 301 TCACCGTCACCGGCGGCGATACTGTTCGAAACGAGATGGTTTTTATCCCACCAACCACCA 360 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 294 TCACCGTCACCGGCGGCGATAATGTTCGAAACGAGATGGTTTTTATCCCACCCACCACCA 353 Query 361 CAGGAGACGTTGTAACAGGAAACGGTACCGTTTCAAGCAGCGATCTAAGCTTTCACGATG 420 |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 354 CAGGAGACGTAGTAACAGGAAACGGTGCCGTTTCTAGCAGCGATCTAAGCTTTCACGATG 413 Query 421 GTCAAGGACTGTCTTTGAGCCTTGGTACTCAGATCTCTGTTGCTCCGTTTCACTTTCATC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 GTCAAGGACTGTCTTTGAGCCTTGGTACTCAGATCTCTGTTGCTCCGTTTCACTTTCATC 473 Query 481 AATACCAATTGGGGTTTACTAGTCAGAATCCTTCAATTTCAGTCAAGGAAACGTCACCGT 540 |||||||||| |||||| || ||| |||||||||||||||||||||||||||||||||| Sbjct 474 AATACCAATT-GGGTTT--TACTCAAAATCCTTCAATTTCAGTCAAGGAAACGTCACCGT 530 Query 541 TTCATGTGGATGAGATGAGTGTGAAGAGCAAAGAAATGATCTTGTTGGGTCAATCTGATC 600 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 531 TTAATGTGGATGAGATGAGTGTGAAGAGCAAAGAAATGATGTTGTTGGGTCAATCTGATC 590 Query 601 CTTCCTCTGGTTATGCTGGTAATGGTGGGAATGGCTTCTACAACAATTATCGGTATAATG 660 ||||||||||||||||||| | || || | ||||||||||||||||||||||||| Sbjct 591 CTTCCTCTGGTTATGCTGG-GA--GT-GG-A----TTCTACAACAATTATCGGTATAATG 641 Query 661 AGACATCAGGAGGGTTTATGAGCAGCGTTCTGCGTTCTCGGTATCTTAAACCTGCTCAGA 720 ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| Sbjct 642 AGACATCAGGAGGGTTTATGAGCAGCGTTTTGCGGTCTCGGTATCTTAAACCGGCTCAGA 701 Query 721 ATTTGCTTGATGAAGTGGTTAGTGTCAAGAAAGAACTAAACCAAATGGGGAAGAAGAAGA 780 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 702 ATTTGCTTGATGAAGTGGTTAATGTCAAGAAAGAACTTAACCAAATGGGGAAGAAGAAGA 761 Query 781 TGAAAGTTAATGACTTTAACAGTGGTTCTAAGGAGATAGAAGGAGGA-G--GTGGTGAGT 837 ||||||||||||||||||||| ||||||||||||||||||||||||| | |||| |||| Sbjct 762 TGAAAGTTAATGACTTTAACAATGGTTCTAAGGAGATAGAAGGAGGAGGTAGTGGCGAGT 821 Query 838 TATCGAGTGATTCGAATGGGAAATCGATTGAGTTATCTACAATTGAACGTGAAGAGCTTC 897 |||||| |||||||||||| |||||||| |||||||||||| |||||||||| ||||||| Sbjct 822 TATCGAATGATTCGAATGGCAAATCGATGGAGTTATCTACAGTTGAACGTGAGGAGCTTC 881 Query 898 AGAACAAGAAGAACAAGCTTTTAACAATGGTTGATGAGGTAGATAAAAGATATAACCAAT 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 882 AGAACAAGAAGAACAAGCTTTTAACAATGGTTGATGAGGTAGATAAAAGATATAACCAAT 941 Query 958 ATTACCATCAAATGGAAGCATTAGCTTCATCATTTGAGATAGTAGCAGGACTTGGATCAG 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 942 ATTACCATCAAATGGAAGCATTAGCTTCATCATTTGAGATAGTAGCAGGACTTGGATCAG 1001 Query 1018 CTAAGCCTTACACATCAGTTGCTCTCAACAGAATCTCTCGCCATTTTCGTGCTCTTCGCG 1077 ||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1002 CTAAGGCGTACACATCAGTCGCTCTCAACAGAATCTCTCGCCATTTCCGTGCTCTTCGCG 1061 Query 1078 ACGCAATAAAGGAACAAATTCAGATTGTTAGAGAAAAACTTGGGGAGAAAGGAGGAGAGT 1137 |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1062 ACGCAATAAAGGAACAAATTCAGATTATTAGAGAGAAACTTGGGGAGAAAGGAGGAGAGT 1121 Query 1138 CGTTGGATGAGCAACAAGGAGAGAGGATACCAAGG-TTGAGGTATTTAGATCAACGGTTG 1196 ||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| Sbjct 1122 CGTTGGATGAGCAACAAGGAGAGAGAATACCAAGGCTT-AGGTATTTAGATCAACGGTTG 1180 Query 1197 AGACAGCAAAGAGCTTTGCATCAACAGCTTGGAATGGTTCGACCTGCTTGGAGACCTCAA 1256 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1181 AGACAGCAAAGAGCTTTGCATCAACAGCTTGGAATGGTTCGACCCGCTTGGAGACCTCAA 1240 Query 1257 AGAGGTCTTCCTGAAAACTCTGTCTCTGTTCTTCGCGCTTGGCTCTTTGAACATTTCCTT 1316 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1241 AGAGGTCTTCCTGAAAACTCTGTATCTGTTCTTCGCGCTTGGCTCTTCGAACATTTCCTT 1300 Query 1317 CATCCATATCCGAAAGAATCTGAGAAAATCATGCTTGC-AAAGCAGACAGGATTGTCAAA 1375 |||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||| Sbjct 1301 CATCCATACCCGAAAGAATCTGAGAAAATCATGCTTGCGAAA-CAGACAGGACTGTCAAA 1359 Query 1376 GAACCAGGTTGCTAATTGGTTCATAAACGCGAGAGTTCGTCTGTGGAAACCGATGATCGA 1435 ||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct 1360 AAACCAGGTTGCTAATTGGTTCATTAATGCGAGAGTCCGTCTATGGAAACCGATGATCGA 1419 Query 1436 AGAAATGTATAAAGAAGAGTTTGGTGATGAATCTGAGTTACTAATCTCCAAATCTTCCCA 1495 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1420 AGAGATGTATAAAGAAGAATTTGGTGATGAATCTGAGTTACTAATCTCCAAATCTTCCCA 1479 Query 1496 AGAACCCAACAGCACAAACCAAGAAGACTCCTCATCgcagcagcagcagcagcaAGAGAA 1555 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1480 AGAACCCAACAGCACAAACCAAGAAGACTCCTCGTCGCAGCAGCAGCAGCAGCAAGAGAA 1539 Query 1556 CAACAACAACAGCAACCTCGCTTATTCATCTGCAGACACAACAAACATTGTCTTCTCATC 1615 |||||||||| | || |||||||||||||||||||||||||||||||||||||||| Sbjct 1540 CAACAACAAC--C----TCACTTATTCATCTGCAGACACAACAAACATTGTCTTCTCATC 1593 Query 1616 AGAAACCAAACCAGATCGTGTTCTAGGCAATGATAACGACCCACAGCAACAACAGATAAA 1675 |||||| |||||||| ||||||||||||||||||||||| ||||| |||| || ||||| Sbjct 1594 AGAAACTAAACCAGACCGTGTTCTAGGCAATGATAACGAGCCACAACAACCGCAAATAAA 1653 Query 1676 CCGCTCATCGGATTACGACACTCTGATGAACTATCACGGGTTTGGTGTTGATGATTACCG 1735 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1654 CAGGTCATCGGATTACGACACTCTGATGAACTATCACGGGTTTGGTGTTGATGATTACCG 1713 Query 1736 TTACATTAGCGGAAGCAACCAGCAAGAAAGCAGATTCTCCAATTCCCATCACTTACACGA 1795 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1714 TTACATAAGCGGAAGCAACCAGCAAGAAAGCAGATTCTCCAATTCCCATCACTTACACGA 1773 Query 1796 CTTTGTTGTGTGAT--AT--TATCTGGTTCTTCTTGGTACAGAGGAGATGATTCTTGAAG 1851 ||||||||| |||| || |||||||||||| || |||||||| ||||||||||||| Sbjct 1774 CTTTGTTGTTTGATTGATAGTATCTGGTTCTT---GGCACAGAGGACATGATTCTTGAAG 1830 Query 1852 CGCAAGAAATGTGCTTTTGCATTTTTATAGTATTAGGCATAATACACCCATTCTCTATGG 1911 ||||||||||| |||| |||| ||||||||| ||||||||||||||| |||| ||| ||| Sbjct 1831 CGCAAGAAATGCGCTTCTGCAATTTTATAGTTTTAGGCATAATACACACATTGTCTGTGG 1890 Query 1912 ATTATATAGTAGATGTGTAGGTTGCTTTTGTGTATAGTAGACTCTTAAGCCAAATATTGA 1971 | ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 1891 AATATATAGTAGATGTGTAGGTTGCTTTTGTGTATAGTACACTCGTAAGCCAAATATTGA 1950 Query 1972 TATGTGTGTATAATAATATTCACGGTGGTATAAAGGATACTTGCAAGTGTG 2022 | ||||||||||| | | | ||||||||||||||||||||||||||||||| Sbjct 1951 TGTGTGTGTATAAGA-T-T-CACGGTGGTATAAAGGATACTTGCAAGTGTG 1998 > Ahg476691 jgi|Araly1|476691|fgenesh2_kg.2__1821__AT1G75410.1 Length=2084 Score = 634 bits (343), Expect = 0.0 Identities = 717/886 (81%), Gaps = 71/886 (8%) Strand=Plus/Plus Query 617 TGGTAATGGTGGGAATGGCTTCTACAACAATTATCGGTATAATGAGACATCAGGAGGGTT 676 |||||||||| | ||| |||||||||||||| | || | | |||||||| |||||| Sbjct 656 TGGTAATGGT--G-TTGGTTTCTACAACAATTA-CCGT-T-ACGAGACATC---AGGGTT 706 Query 677 TATGAGCAGCGTTCTGCGTTCTCGGTATCTTAAACCTGCTCAG-AATTTGCTTGATGAAG 735 | |||| || |||||| | ||||| || |||||||| | ||| || ||||||||||||| Sbjct 707 TGTGAGTAGTGTTCTGAGATCTCGTTACCTTAAACCAACACAGCAA-TTGCTTGATGAAG 765 Query 736 TGGTTAGTGTCAA-GAAAGAACTAAACCAAATGGGGAAGAAGAAGATGAAAGTTAATGAC 794 | |||||||| || ||||| | | | || ||||||| ||||||||| ||| || || Sbjct 766 TTGTTAGTGT-AAGGAAAG-ATTTGA--AATTGGGGAATAAGAAGATG-AAG--AACGA- 817 Query 795 TTTAACAGTGGTTCTAAGGA-GAT-AGAA--GGAGGAGGTGGTGA-GTTATCGAG-TGAT 848 ||| | || || || || | | || || || ||| | | ||| | || ||| Sbjct 818 --TAA-A--GG-TC-AA-GACTTTCAAAATGGGTCGA-GTGATAACATTA-C-AGAAGAT 866 Query 849 TCG-AATGGGAAATCG-ATTGAGTTATCTACAATT--GAACGTGAAGAGCTTCAGAACAA 904 | ||| ||||| | ||||||||| | || |||||| | ||||| |||| ||| Sbjct 867 GAGAAAT-CTCAATCGCA-GGAGTTATCT-C-CTTCAGAACGTCAGGAGCTACAGAGCAA 922 Query 905 GAAGAACAAGCTTTTAACAATGGTTGATGAGGTAGATAAAAGATATAACCAATATTACCA 964 ||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct 923 GAAGAGCAAGCTCTTAACAATGGTGGATGAGGTAGATAAAAGGTATAACCAATACCACCA 982 Query 965 TCAAATGGAAGCATTAGCTTCATCATTT-GAGATAGTAGCAGGACTTGGATCAGCTAAGC 1023 |||||||||||| ||||| || || ||| ||||| ||| |||| |||||| ||||||||| Sbjct 983 TCAAATGGAAGCTTTAGCATCGTC-TTTCGAGATGGTAACAGGTCTTGGAGCAGCTAAGC 1041 Query 1024 CTTACACATCAGTTGCTCTCAACAGAATCTCTCGCCATTTTCG-TGCTCTTCGCGACGCA 1082 |||||||||| || ||||| || ||||||||||||||||| || |||| | ||||| || Sbjct 1042 CTTACACATCGGTCGCTCTGAATAGAATCTCTCGCCATTTCCGCTGCT-TGCGCGATGCG 1100 Query 1083 ATAAAGGAACAAATTCAGATTGTTAGAGAAAAACTTGGGGAGAAAGGAGGAGAGTCGTTG 1142 ||||| || || |||||| | | |||| || ||||||||| | || |||| | || Sbjct 1101 ATAAAAGAGCAGATTCAGGTAATCAGAGGGAAGCTTGGGGAG--A-GA-GAGA--C-TT- 1152 Query 1143 GATGA-GCAACAAGGAGAGAGGATACCAAG-GT-TGAGGTATTTAGATCAACGGTTGAGA 1199 ||| | ||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct 1153 -CTGATG-AACAAGGAGAGAGGATACC--GCGTCTGAGGTATTTAGATCAACGGTTGAGA 1208 Query 1200 CAGCAAAGAGCTTTGCATCAACAGCTTGGAATGGTTCGACCTGCTTGGAGACCTCAAAGA 1259 || || |||||||||||||||||||||||||||||| |||| ||||||||||| |||||| Sbjct 1209 CAACAGAGAGCTTTGCATCAACAGCTTGGAATGGTTAGACCAGCTTGGAGACCACAAAGA 1268 Query 1260 GGTCTT-CCTGAAAACTCTGTCTCTGTTCTTCGCGCTTGGCTCTTTGAACATTTCCTTCA 1318 || ||| |||||||||||||||||| | || || |||||||||||||| ||||||||||| Sbjct 1269 GG-CTTACCTGAAAACTCTGTCTCTATACTCCGAGCTTGGCTCTTTGAGCATTTCCTTCA 1327 Query 1319 TCCATATCCGAAAGAATCTGAGAAAATCATGCTTGCAAAGCAGACAGGATTGTC-AAAGA 1377 ||||||||| |||||||| ||||||||||||||| |||||||||||||| | || ||| | Sbjct 1328 TCCATATCCTAAAGAATCAGAGAAAATCATGCTTTCAAAGCAGACAGGACTATCGAAA-A 1386 Query 1378 ACCAGGTTGCTAATTGGTTCATAAACGCGAGAGTTCGTCTGTGGAAACCGATGATCGAAG 1437 |||||||||| |||||||| || |||||||||||||| || ||||||||||||||||||| Sbjct 1387 ACCAGGTTGCAAATTGGTTTATTAACGCGAGAGTTCGACTATGGAAACCGATGATCGAAG 1446 Query 1438 AAATGTATAAAGAAGAGTTTGGTGA-TGAATCTGAGTTACTAATCT 1482 | |||||||||||||||||||| || | | | ||||||||| ||| Sbjct 1447 AGATGTATAAAGAAGAGTTTGGAGACTCAG-CAGAGTTACTA-TCT 1490 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76028129020 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5