BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19770.1
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472202 jgi|Araly1|472202|fgenesh2_kg.1__2156__AT1G19770.1 2030 0.0
> Ahg472202 jgi|Araly1|472202|fgenesh2_kg.1__2156__AT1G19770.1
Length=1365
Score = 2030 bits (1099), Expect = 0.0
Identities = 1296/1388 (93%), Gaps = 25/1388 (2%)
Strand=Plus/Plus
Query 11 ACCAAATCTAATCGCCGACATACATTGAACTCAAATCCGCTCAGAATCTCCGACAATCAG 70
||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 1 ACCAAATCTAATCGCCGACATACTTTGAACTCAAAT-CGCTTAGAATCTCCGACAATCAG 59
Query 71 TTCCAATCCATGGCTCAGAATCAACAACCTATTTTCCAGACCAAACCTCCAGAACAATTT 130
||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||
Sbjct 60 TTCCAATCCATGGCTCAGAATCAACCACCAATTTTTCAGACCAATCCTCCAGAACAATTT 119
Query 131 GTGCAAATACCTATCAACATCGAGCGTGATTCTTCAACCACACGCATGAACCAAACCGGA 190
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 GTGCAAATACCAATCAACATCGAGCGTGATTCGTCAACCACACGCATGAACCAAACCGGA 179
Query 191 AACACAATCCGGAAACCAAACCACTGGCCAACCATCACCATCTCAATCATCTTCGTCATC 250
||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 180 AACACAAACCGGAAACCAAACCACTGGCCAACGATCACCATCTCGATCATCTTCGTCATC 239
Query 251 ATCGGTCAATCCATAGCGAAACTCCTCGAAAACTTCTACTACGACAAAACCAACCGAAGC 310
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 ATCGGCCAATCCATAGCGAAACTCCTCGAAAACTTCTACTACGACAAAATCAACCGAAGC 299
Query 311 GAATACAACGAAAACCGTCAAAACGATGGCGTTTGGACTCAATCTCTTCTCCAAACTGTT 370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 GAATACAACGAAAACCGTCAAAACGATGGCGTTTGGACTCAATCTCTTCTCCAAACCGTT 359
Query 371 GGTTTCCCTCTCCTTCTTCTCCCGTTCCTCATCTTCATCACCAAGAACAAACGCAACCAC 430
||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 360 GGTTTCCCTCTTCTCCTTCTCCCTTTCATCATCTTCATCACCAAGAACAAACGCAATCAT 419
Query 431 CATCAACAACCTCCGATCACTTCCGATTCAATCCACTTAAAATCCTTAGCTGTGATCTAC 490
|||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 420 CATCAACAACCTCCGATCACTTCCGATTCAATCCACGTCAAATCCTTAGCCGTGATCTAC 479
Query 491 ATTTGCATCGGAATTATCATGTCCGTTCAAGGAAGACTCGCAGCCATGGGAAAACTCGAG 550
||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||
Sbjct 480 ATTTGCATCGGAATTATCATGGCGGTCCAAGGAAGACTCGCCGCCATGGGAAAACTCGAG 539
Query 551 ATCCCATTTGGTGTTTTCACTCTGATCTACACAGCACAGCTCTTCTTCACTCCTATCTTC 610
|||||||||||| |||| ||||||||||||||| ||||||||||||||||||| || |||
Sbjct 540 ATCCCATTTGGTATTTTTACTCTGATCTACACAACACAGCTCTTCTTCACTCCGATTTTC 599
Query 611 GCAGCTTTCATTAACAAAATCAAATTCAATCGATGGGTTGTTATCTCTGTGATCTTAGCT 670
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCAGCTTTCATCAACAAAATCAAATTCAATCGATGGGTTGTTATCTCTGTGATCTTAGCT 659
Query 671 ATCATCACCGGAGCTCTTACTCTGTCTTCTTCATTCGGTGGTGAGCCTGATGAAGCAGAG 730
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 ATTATCACCGGAGCTCTTACTCTGTCTTCTTCATTCGGCGGTGAGCCTGATGAAGCAGAG 719
Query 731 GAGAATTACGCTAGAGGCTCATGGGCTGCTCTGTTCGCTGGAATCTGTTTCGCTCTTCTT 790
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAGAATTACGCCAGAGGCTCATGGGCTGCTCTGTTCGCTGGAATCTGTTTCGCTCTTCTT 779
Query 791 CTCTGTAACATCCAAAACGTCTTCGACAGTTACATCTTCAAACGAACTGAATCAACCAAT 850
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 780 CTCTGTAACATCCAAAACGTCTTCGACAGTTACATCTTCAAAAGAACCGAATCGACCAAT 839
Query 851 CAAAAACCAAGCTTTGCCTCTGTTTTCGAAGTTATTATCTTCTCTTCTCTCGTTGCTACG 910
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 840 AAAAAACCAAGCTTTGCCTCTGTTTTCGAAGTTATAATCTTCTCTTCCCTCGTCGCCACA 899
Query 911 ATCATCTCCGTCGTGGGTCTGCTTATAGCCGGTGAGCAACACGATTTGAAGAGGGAAATG 970
|||||||||||||||||||||||||| ||||| ||||||||||| || |||||||| |||
Sbjct 900 ATCATCTCCGTCGTGGGTCTGCTTATCGCCGGCGAGCAACACGAATTAAAGAGGGAGATG 959
Query 971 AATGGATTCTCGAAAGGG-AAAGGTTCTTATGTGATGGCTATGGTTGGTCAAGCTGTTTC 1029
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 AATGGATTCTC-AAAGGGTAAAGGTTCTTATGTGATGGCTATGGTTGGTCAAGCTGTGTC 1018
Query 1030 GTGGCAGGTCTATTGGGTTGGGATTGTTGGACTTGTCTACTCTGTTTCGAGCGTGTTGTC 1089
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 GTGGCAGGTCTATTGGGTTGGGATTGTGGGACTTGTCTACTCTGTTTCGAGCGTGTTGTC 1078
Query 1090 GAATGTGATCAGTGTCATTACGTGGCCGATTGTGTCGGTTCTTGTGGTGATCTTCTTCAA 1149
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAATGTGATCAGTGTTATTACATGGCCGATTGTGTCGGTTCTTGTGGTGATCTTCTTCAA 1138
Query 1150 TTTCATGGATGATGAGTTTGATGCCTTCAAAGGTGTTGCCTTGGTTACTGCCGTCTTAAG 1209
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1139 TTTCATGGATGATGAGTTTGATGCCTTCAAAGGTGTCGCCTTGGTTACTGCAGTCTTAAG 1198
Query 1210 CGCTGCAGCTTATTTCTTTAGGCTTCACAAAGACAATCGTATGGCTTATTAGGTTTGGAT 1269
||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1199 CGCCGCAGCTTATTTCTTTAGGCTTCACAAAGAGAATCGTATGGCTAACTAGGTTTGGAT 1258
Query 1270 TCTTGAATCTCTAAAGAAAGtttttttATTTCCCTTGATTTTTTGTGTGTATATCTAATC 1329
|| || ||| ||| | || |||||||||||||| |||||| ||||
Sbjct 1259 TC------CT-----GAA--TTTCT------CC-TTGATTTTTTGTGTTTATATC-AATC 1297
Query 1330 ATATATTCTAGGTGTTTATCTTGTGT-AAGTGTAAGTGTGTAACAGCTTTGGTTATAGAT 1388
|||| ||||| |||||||||||| | |||||||||||||||| ||||||||||||||||
Sbjct 1298 ATATGTTCTAATTGTTTATCTTGTCTTAAGTGTAAGTGTGTAATAGCTTTGGTTATAGAT 1357
Query 1389 GTAAATTT 1396
||||||||
Sbjct 1358 GTAAATTT 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52183635650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5