BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19810.1 Length=1607 Score E Sequences producing significant alignments: (Bits) Value Ahg920931 jgi|Araly1|920931|scaffold_102212.1 307 1e-82 Ahg906882 jgi|Araly1|906882|Al_scaffold_0003_4010 272 5e-72 > Ahg920931 jgi|Araly1|920931|scaffold_102212.1 Length=280 Score = 307 bits (166), Expect = 1e-82 Identities = 214/236 (91%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 1250 CAAAACGTGGGTCAGGAGAAGGTGCTTGGGTTGTTGAA-AGACCATTGACTCAGTTGCTC 1308 |||||||||| || ||||||||||||||| |||||| || |||||| |||||||||| Sbjct 43 CAAAACGTGGATC---AGAAGGTGCTTGGGTAGTTGAACGGA-CATTGATTCAGTTGCTC 98 Query 1309 AATG-AA--ATGAGCGGTGGAAAAGAACGAGATGGAGTGTTTGTGATTGGTGCAACGAAT 1365 |||| || ||||||||||||||| ||||| |||| |||||||||||||||||||||||| Sbjct 99 AATGAAATGATGAGCGGTGGAAAAAAACGAAATGGTGTGTTTGTGATTGGTGCAACGAAT 158 Query 1366 AGACCGGAGATGATGGATCCTGCGATTACAAGACCAGGGAGGTTTGGGAAACATATCTAT 1425 |||||||| | |||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 159 AGACCGGACACGATGTATCCTGCGATTACAAGACCAGGGAGGTTTGGGAAACATCTCTAT 218 Query 1426 ATACCTCTTCCAAACTCTGTTCAACGAGGTTTGATTCTGAAATCTCTTGCGAGGAA 1481 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 219 GTACCTCTTCCAAACTCTGTTCAACGAGGTTTGATTCTGTAATATCTTGCGAGGAA 274 > Ahg906882 jgi|Araly1|906882|Al_scaffold_0003_4010 Length=2157 Score = 272 bits (147), Expect = 5e-72 Identities = 266/321 (83%), Gaps = 17/321 (5%) Strand=Plus/Plus Query 129 GAAGCCAATTTCTGGGATTTTACTTCATGGTCCACCTGGTTGTGGCAAGTCTACATTGGC 188 ||| || ||||||||| |||||||||||||||||||||||||||||||||||||| | || Sbjct 534 GAAACCTATTTCTGGGTTTTTACTTCATGGTCCACCTGGTTGTGGCAAGTCTACACTAGC 593 Query 189 TCGTGCATGCCATTGCTAATGAAACTGGTGTTCC-TTTTCATATGATCTCTGCTTCTGAG 247 | || |||||| || || |||||||| || || |||| ||||||| || ||| |||| Sbjct 594 T--TG--TGCCATCGCCAACGAAACTGGCGTGCCCTTTT-ATATGATTTCCGCTGCTGAA 648 Query 248 GTTG-TTTCTGGTGTTTCGGGTGAATCTGAAGAGAATATAAGAAAACTCTTCTCTAAAGC 306 ||| ||||||||||||| |||||||||||||||||||| || ||||||||| |||||| Sbjct 649 -TTGGTTTCTGGTGTTTCCGGTGAATCTGAAGAGAATATCAGGGAACTCTTCTTTAAAGC 707 Query 307 GTATAGAACTGCTCCTTCGATTATCTTTATCGATGAGATTGAGGCGATTGCGTCAAAGAG 366 ||||| ||||| || || ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct 708 TTATAGGACTGCACCCTCCATTATATTTATTGATGAGATTGACGCAATTGCATCAAAGAG 767 Query 367 GGATAATCATCAGCAAAAGGGTATGGAGACTCGTATTGTT-ACACAGTTGA-TGAATTGT 424 ||| ||||| ||| ||| || |||||| || ||||| || || ||||| | ||| |||| Sbjct 768 GGAGAATCAGCAG-AAA-GG-TATGGATACACGTATC-TTGACTCAGTT-ACTGAGTTGT 822 Query 425 ATGGACCAAGA-GTATATGCT 444 ||||| | || ||||||||| Sbjct 823 ATGGATGA-GAAGTATATGCT 842 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60220677345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5