BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19860.1
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472211 jgi|Araly1|472211|fgenesh2_kg.1__2165__AT1G19860.1 2122 0.0
> Ahg472211 jgi|Araly1|472211|fgenesh2_kg.1__2165__AT1G19860.1
Length=1579
Score = 2122 bits (1149), Expect = 0.0
Identities = 1490/1639 (91%), Gaps = 85/1639 (5%)
Strand=Plus/Plus
Query 1 AGATAAAATGACGATGGTGACCATAAGAAGAAGAACCCAGAGGATCTAGGGCTTCACAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGATAAAATGACGATGGTGACCATAAGAAGAAGAACCCAGAGGATCTAGGGCTTCACAAT 60
Query 61 CGATT-C--CT-T---CTCTCTATCTCGACGGA-TTTAGCTTGCAGATGTTTCGTCTCCT 112
|| || | || | |||||| |||||||||| |||||||| |||||||||| ||||||
Sbjct 61 CGCTTCCATCTCTCAACTCTCTCTCTCGACGGATTTTAGCTTACAGATGTTTCTTCTCCT 120
Query 113 CTCTGGATTCATTAATTCATCATCTTCTCTTCTTAAATTC-TCTATCTTTTCCTG-ACAA 170
|||||| |||||||||||||||||||||||||| || |||||||||| | ||
Sbjct 121 CTCTGG-------GATTCATCATCTTCTCTTCTTAAATTCTTC-CTCTTTTCCTGAAAAA 172
Query 171 AGTTAGGGTTTTTCGATAACTCGGGATGAGAATAATTGGTTCAATCTAAAGAGCTGGCTT 230
||||||||||||| ||||||| |||||||| || | || | || | ||
Sbjct 173 AGTTAGGGTTTTTTGATAACTTGGGATGAG---AA-----T-AA--T---GA--T-GC-- 213
Query 231 TGATAAATTATTGAGATTTAAAAGGGTAATTGGACCTTCCTGAATCAATTTTCCTGGAAA 290
| | || | | | ||||||||||||||||||||||||||| || | | |||
Sbjct 214 T--TCAA-T-CT-A-ATTTAAAAGGGTAATTGGACCTTCCTG----AA---T-C---AAA 256
Query 291 AAGAATTGATTTTTAGATTG-AAAAAGAAGTGAGAGTTTCTGTAACTATGAGGGCATTGC 349
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 257 AAGAATTGATTTTTAGATTGAAAAAAGAAGTGAGAGTTTCTGTAACTATGAGGGCATTGC 316
Query 350 ACAAAAGGGTATCGTGGCCACCAGATTTTAAACTTTGTCAGGTACGGCTATTCATATCAG 409
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 ACAAAAGGGTATCTTGGCCACCAGATTTTAAACTTTGTCAGGTACGGCTATTCATATCAG 376
Query 410 AGGATTCACCTTCACAAGTTGGATCAGAGTCTCAAGATCACCTGCAAGCAAAGTCACCAT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 AGGATTCACCTTCACAAGTTGGATCAGAGTCTCAAGATCACCTGCAAGCAAAGTCACCAT 436
Query 470 TGGCTTCACATCCAAGTGATGATAATCTGCCACCTGGTTTTGGTGGACC-CTTTTCTGCG 528
|||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 437 TGGCTTCACATCCAAGTGATGATAATCTACCACCTGGTTTTGGTGGACCTCTTT-CTGCG 495
Query 529 AATGAGTCCCAGATTAAGTTATCAGATATCCCACTAATAAAGTGGAAATGCTCCGTCCAG 588
|||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |
Sbjct 496 AATGAGTCCCAGATTAAGTTATCAGACATCCCAGTAATAAAGTGGAAATCCTCCGTCCGG 555
Query 589 ATTCTGCTAGATCG-GGAATGGAAAGTGGTTGCAGGGGACGAAAGCAAAGAAGTGGAGGC 647
|||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 556 ATTCTGCTAGAT-GAGGAATGGAGAGTGGTTGCAGGGGACGAAAGCAAAGAAGTGGAGGT 614
Query 648 CCAAAATGAGAGGGAATTGAGAGTTCTTGAAGCATTTTATCCTGGCGCATCATCTATTCC 707
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 CCAAAATCAGAGGGAATTGAGAGTTCTTGAAGCATTTTATCCTGGCGCATCATCTATTCC 674
Query 708 TCCAAACCCTTCGGTTCCAGCTGATGTTGAGGACTCACATCATGATGATCAGCAAACCAT 767
||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 675 TCCAAACCCTTCGGTTCCAGCTGATGTTGAGAAC-CA--TCATGATGATCAGCAAACCAT 731
Query 768 TGTCATACCCATCCTACCTGTAGAAGATGATGACATAGCGATGGATTCAGCATCTGATTT 827
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 732 TGTCATACCCATCCTACCTGTAGAAGACGATGACATAGCGTTGGATTCAGCATCTGATTT 791
Query 828 CCCAACCCAATCTGGCGTGGATGTGGGAACAGAGCCATCAATAACCGATGAGAACACATC 887
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 792 CCCAACCCAATCTGGCGTGGATGTGGGAACAGATCCATCAATAACGGATGAGAATACATC 851
Query 888 AACTTCTTCAACCCTCCCTGCAGGGCCAGATATAATGGCTGCGTTATCTGCAATCTCAAA 947
||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 852 AACTTCTTCAATCCTCCCTGCAGGGCCAGAGATAATGGCTGCATTATCTGCAATCTCAAA 911
Query 948 CAGCAAAGAACAAGGCAGTA---TGATCGACCAAGATCTGCTTATTAAAATCCTAAGCAA 1004
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 912 CAGCAAAGAACAAGGCAGCAGCATGATCGACCAAGATCTGCTTATTAAAATCCTAAGCAA 971
Query 1005 CCCTAAGTTGGTCGAGAATCTTGTTGCAAAT-CGTGGCAGTGCAGGTTCAGTCTCCTCCA 1063
||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||
Sbjct 972 CCCTAAGTTGGTCGAGAATCTTGTTGCAAATTC-TGGCAGTGCAGGTTCAGTTTCCTCCA 1030
Query 1064 ACACAAGTAGCCTCTACTCATCTTCAACACATGAAGCCAACGGAGTAGTAACCACGGCAC 1123
|| || ||||||||||| |||||||||||||||||||||| ||||||||||| || ||||
Sbjct 1031 ACGCAGGTAGCCTCTACCCATCTTCAACACATGAAGCCAATGGAGTAGTAACTACAGCAC 1090
Query 1124 CTATTTCCTCAAATGGACAATTTTACGCTCAGCCACCCATAACTCATATTCCTCCCATGG 1183
| | || ||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 1091 CCACTTACTCGAATGGACAATTTTACCCTCAGCCATCCATAACCCATATTCCTCCCATGG 1150
Query 1184 CGTATACTCCTCACGCTCCTCAAGACCAACCGAACTATGGAGCACCGCCAGCAAGAGATG 1243
||| |||||||| | | |||||||| |||||||||||||| |||||||||||||
Sbjct 1151 CGTTTACTCCTC----T----A-GACCAACCAAACTATGGAGCACCTCCAGCAAGAGATG 1201
Query 1244 CTAGTTATTACAAGAACCTGATTCAGCAACATGGCGGGGATAGACAAGAGACGCCGCCAG 1303
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1202 CTAGTTATTACAAGAACCTGATTCAGCAACATGGCGGGGATAGACAAGAGATGCCGCCAG 1261
Query 1304 TTCAACATC-TC--GGTTATCGATACAACCTCCAACCTGGAGGAGGACCTAACCCGGAGA 1360
||||||| | || |||||||| ||||||| ||||||||||||| |||||| ||||||
Sbjct 1262 TTCAACAACATCTTGGTTATCGTTACAACCCCCAACCTGGAGGA---CCTAACACGGAGA 1318
Query 1361 TGGTAAATAGCAGTAATAATAACCAGAGGCCAAGGGATTCAAAACCCAAGATAATGAAGG 1420
|||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1319 TGGTAAATAGCAATACTAATAACCAGAGGCCAAGGGACTCAAAACCCAAGATAATGAAGC 1378
Query 1421 CTTGCATGTACTTCAACAGCGCAAGGGGTTGTCGCCATGGAGCTAATTGTATGTACCAGC 1480
||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||
Sbjct 1379 CTTGCATGTACTTCAACAGTACGAGGGGTTGTCGCCATGGAGCCAATTGTTTGTACCAGC 1438
Query 1481 ACGATGCTAC-AC-CCT-ACCAGCCGAGGAATCTAAACAATGGTAATATCAACACTTCTG 1537
|||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1439 ACGATGCTACTACACCTTACCAGCCGAGGAATCTAAATAATGGTAATATCAACACTTCTG 1498
Query 1538 ATATGCAGAATGCAAAAAGAATGAGATTTGACAGAGACTGATGCAGAATTAGCATACCAC 1597
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AGATGCAGAATGCAAAAAGAATGAGATTTGACAGAGACTGATGCAGAATTAGCATACCAC 1558
Query 1598 ACATGCTCTCTGCCTCTTG 1616
||||||||| |||||||||
Sbjct 1559 ACATGCTCTTTGCCTCTTG 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67686365365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5