BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20020.1
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472228 jgi|Araly1|472228|fgenesh2_kg.1__2182__AT1G20020.3 2274 0.0
> Ahg472228 jgi|Araly1|472228|fgenesh2_kg.1__2182__AT1G20020.3
Length=1372
Score = 2274 bits (1231), Expect = 0.0
Identities = 1329/1376 (97%), Gaps = 8/1376 (1%)
Strand=Plus/Plus
Query 1 ACGAGATACTCTCTTCTTA-AAACCTCATCCACCCAAACACAAATGTCTTGTAATCCTTC 59
|||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ACGAGATACTCTCTTC-TACAAACCTCATCCACCCAAACACAAATGTCTTCTAATCCTTC 59
Query 60 TCTTATCTTTCTCCTTGTGATTCCTTTTTATATTCCTCTGATATTTTCTCTCAGTTTGAT 119
|||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 60 TCTTATCTTTCTCCTTCTGATTCCTTTTTATATTCCTCTGATTTTTTCTCTCAATTTGAT 119
Query 120 CTCATTTGCTCTGCAATGGCGACTACCATGAATGCTGCTGTTTCTCTCACATCTTCAAAC 179
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCATTTGCTCTGCAATGGCTACTACCATGAATGCTGCTGTTTCTCTCACATCTTCAAAC 179
Query 180 TCTTCTTCTTTTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAG 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 TCTTCTTCGTTTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTAGTAAG 239
Query 240 GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTTTCCATAAAA 299
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 240 GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAAGTAAAAGAGTGTTTTCCATAAGA 299
Query 300 GCACAAATCACAACAGAAACAGATACTCCTACTCCTGCAAAGAAAGTAGAGAAAGTGTCA 359
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 300 GCACAAATCACAACAGAAACAGATACTCCTACTCCTGCCAAGAAAGTTGAGAAAGTGTCA 359
Query 360 AAGAAGAACGAGGAAGGTGTGATTGTTAACAGGTACAGACCAAAAGAGCCTTACACTGGA 419
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 360 AAGAAGAATGAGGAAGGTGTGATTGTTAATAGGTACAGACCAAAGGAGCCTTACACTGGA 419
Query 420 AAATGCCTTCTCAACACCAAAATCACAGCTGATGATGCTCCTGGAGAGACCTGGCACATG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAATGCCTTCTCAACACCAAAATCACAGCTGATGATGCTCCTGGAGAGACCTGGCACATG 479
Query 480 GTTTTCAGCCATCAAGGAGAAATCCCGTACAGAGAAGGACAATCTGTTGGTGTGATTGCA 539
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTTTGAGCCATGAAGGAGAAATCCCGTACAGAGAAGGACAATCTGTTGGTGTGATTGCA 539
Query 540 GATGGAATTGACAAGAATGGAAAGCCTCACAAGGTCAGACTTTACTCCATTGCAAGCAGC 599
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 540 GATGGAATTGACAAGAATGGAAAGCCTCACAAGGTCAGACTTTACTCGATAGCGAGCAGC 599
Query 600 GCTCTTGGAGATCTCGGCAATTCTGAAACCGTTTCTTTGTGTGTTAAAAGACTTGTTTAT 659
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 600 GCTCTTGGAGATCTCGGCAATTCTGAAACCGTTTCTTTGTGTGTGAAAAGACTTGTCTAT 659
Query 660 ACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTGTGATTTGGCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTGTGATTTGGCA 719
Query 720 CCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAGAAATGCTTATGCCAAAGGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAGAAATGCTTATGCCAAAGGAT 779
Query 780 CCAAACGCCACCGTTATTATGCTTGCCACAGGGACAGGAATTGCTCCTTTCAGGTCTTTC 839
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 CCAAACGCCACTGTTATTATGCTTGCCACAGGGACAGGAATTGCTCCTTTCCGGTCTTTC 839
Query 840 TTATGGAAGATGTTCTTTGAGAAACATGATGACTACAAGTTCAATGGCTTAGCTTGGTTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTATGGAAGATGTTCTTTGAGAAACATGATGACTACAAGTTCAATGGCTTAGCTTGGTTG 899
Query 900 TTCTTGGGTGTACCAACCACTAGCTCTTTGCTCTACCAAGAGGAGTTTGATAAGATGAAA 959
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 900 TTCTTGGGTGTACCAACCACTAGCTCATTGCTCTACCAAGAGGAGTTTGATAAGATGAAA 959
Query 960 GCAAAGGCCCCCGAGAACTTCAGGGTGGATTACGCGATAAGCAGAGAACAAGCGAACGAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GCAAAGGCCCCCGAGAACTTCAGGGTGGATTACGCGATAAGCAGAGAACAAGCGAACGAT 1019
Query 1020 AAAGGAGAGAAAATGTATATCCAGACTCGGATGGCGCAATACGCAGCTGAGTTATGGGAG 1079
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1020 AAAGGAGAGAAAATGTATATCCAGACTCGGATGGCGCAGTACGCAGCTGAACTATGGGAG 1079
Query 1080 TTGTTGAAGAAAGACAACACTTTTGTTTACATGTGTGGACTCAAGGGAATGGAGAAAGGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTGTTGAAGAAAGACAACACTTTTGTTTACATGTGTGGACTCAAGGGAATGGAGAAAGGA 1139
Query 1140 ATTGATGACATTATGGTCTCATTGGCTGCAAATGACGGTATTGACTGGTTTGATTACAAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1140 ATTGATGACATTATGGTCTCATTGGCTGCAAATGACGGTATTGACTGGTTTGACTATAAG 1199
Query 1200 AAGCAGTTGAAGAAGGCAGAGCAATGGAACGTTGAAGTCTACTGATCAAAAAGCCTT-TG 1258
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||
Sbjct 1200 AAGCAGTTGAAGAAGGCAGAGCAATGGAACGTTGAAGTCTACTGATCAGAA-GCCCTATG 1258
Query 1259 ACATTTCTGTAGCAAAGTATAGCTGAACAAAACTGTAATTTTC-GCTTCTGAATTTCTGT 1317
||||| || |||||| |||||||||||||||||||||||| || ||||| ||| ||||||
Sbjct 1259 ACATT-CTATAGCAA-GTATAGCTGAACAAAACTGTAATTCTCTGCTTCCGAAATTCTGT 1316
Query 1318 ATTTTGAAGATAAGTTTTTT-AGATATGTTATACTaaaaaaaGAGTTCTTTAATCA 1372
| | |||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1317 AATGTGAAGATAAGTTTTTTTAGATATATTATACTAAAAAAAGAGTTCTTTAATCA 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52107455160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5