BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20030.2
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920960 jgi|Araly1|920960|scaffold_102241.1 1308 0.0
> Ahg920960 jgi|Araly1|920960|scaffold_102241.1
Length=952
Score = 1308 bits (708), Expect = 0.0
Identities = 871/947 (92%), Gaps = 22/947 (2%)
Strand=Plus/Plus
Query 341 TCTCCGGAGTTATGTCAAGGAGCTTCACATTTTCAAACAAATGCGATTACACAGTGTGGC 400
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 10 TCTCAGGAGTTATGTCAAGGAGCTTCACATTTTCGAACAAATGCGAATACACAGTGTGGC 69
Query 401 CGGGAATTCTATCTAACGCCGGAGTTTCTCCATTACCAACCACCGGCTTCGTCCTCCTGA 460
|||||||||||||||||||||||||| |||||||| |||| || ||||||||||| | ||
Sbjct 70 CGGGAATTCTATCTAACGCCGGAGTTCCTCCATTATCAACTACAGGCTTCGTCCTTCAGA 129
Query 461 AAGGCGAGACGCGTACAATCAACGCACCGTCATCATgggggggTCGTTTCTGGGGAAGAA 520
|||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||| |
Sbjct 130 AAGGCGAGACGCGTACAATCGACGCGCCGTCTTCATGGGGTGGTCGTTTCTGGGGAAGGA 189
Query 521 CACTCTGCTCAACCGATTCCGATGGAAAATTCTCGTGTGCCACCGGAGATTGCGGCTCCG 580
|||||||||| ||| ||||||||||||||||||| || || || ||||||||||| ||||
Sbjct 190 CACTCTGCTCTACCAATTCCGATGGAAAATTCTCCTGCGCAACTGGAGATTGCGGTTCCG 249
Query 581 GAAAAATCGAATGCTCCGGCGCTGGAGCTGCTCCTCCTGCGACTTTAGCTGAATTCACTC 640
||||| | ||||||||||||||||||||||| |||||||||||| |||||||||| || |
Sbjct 250 GAAAACTTGAATGCTCCGGCGCTGGAGCTGCCCCTCCTGCGACTCTAGCTGAATTTACCC 309
Query 641 TCGATGGCTCCGGAGGACTCGATTTCTACGATGTCAGTCTCGTCGACGGCTACAATGTCC 700
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 310 TCGATGGCTCCGGAGGACTCGATTTCTACGATGTCAGCCTCGTCGACGGCTACAATGTTC 369
Query 701 AGATGCTGGTGGTTCCTCAAGGCGGCTCCGGTCAGAATTGCAGCAGCACCGGCTGCGTCG 760
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 370 AGATGCTGGTGGTTCCTCAAGGTGGCTCCGGTCAGAATTGTAGCAGCACCGGCTGCGTCG 429
Query 761 TCGATTTAAACGGATCTTGCCCGTCGGAGCTAAGGGTGAATAGCGTC------GA----- 809
||||||||||||| || || ||||| ||||||||||| ||||||||| ||
Sbjct 430 TCGATTTAAACGGCTCATGTCCGTCCGAGCTAAGGGTAAATAGCGTCGGAGGTGACGGCG 489
Query 810 -C---GGG-AAGGAGGCGGTGGCGATGGCGTGTAAAAGTGCGTGCGAGGCGTTTCGGCAG 864
| ||| |||| |||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 490 GCGGTGGGAAAGG-GGCGGTGGCGATGGCGTGTAAAAGCGCGTGCGAAGCATTTCGGCAG 548
Query 865 CCGGAGTATTGCTGCAGCGGCGCGTTTGGATCGCCTGACACGTGTAAGCCGTCTACGTAC 924
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 549 CCGGAGTATTGCTGCAGCGGGGCGTTTGGGTCGCCTGACACGTGTAAGCCGTCTTCGTAC 608
Query 925 TCGCGGATCTTCAAGAGCGCGTGTCCACGCGCCTATAGCTACGCGTATGACGATAAGTCT 984
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TCGAGGATCTTCAAGAGCGCGTGTCCACGCGCCTATAGCTACGCGTATGACGATAAGTCT 668
Query 985 AGTACATTTACGTGCGCGAAATCTCCCAACTACGTCATCACTTTCTGTCCTTCTCCCAAC 1044
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 669 AGTACATTTACGTGCGCGAAATCTCCCAACTACGTTATCACTTTCTGTCCTTCTCCCAAC 728
Query 1045 ACCAGCCTAAAATCAGCTGAGGAACACAGCACAGAGACAATGACGACGACAAGTCCAAGT 1104
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 729 ACCAGCCTAAAATCAGCCGAGGAACAGAGCACAGAGACAATGACGACGACAAGTCCAAGC 788
Query 1105 TCCGGCAGTACGACGTCGTCGCAGATGGTCTACGAAGGTGCTCTGGACGAAAGCAGTGGT 1164
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 789 TCCGGCAGTACGACGTCGTCGCAGATGGTCTACGAAGGTGCTCTAGACGAAAGGAGTGGT 848
Query 1165 TCACCATCTACGTATCACGGCGTATCACGAGCAATCACAGTCGTTCTTCTCTCGCTTGCT 1224
||||||||||| | |||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 849 TCACCATCTACATGTCACGGCGTATCACGAGCAATCACTGTCGTTCT-CTC--GCTTGCT 905
Query 1225 TTTTGTCGTATGTGGTGGTTCTTCTGACCAGAGATTATTTGTCTTAG 1271
||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 906 TTTTGTCGTATGTGGTGGTTCTTTTGACCAGA--TTATATGTCTTAG 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59116060240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5