BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20060.1
Length=2981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335256 jgi|Araly1|335256|fgenesh1_pg.C_scaffold_1001821 1628 0.0
> Ahg335256 jgi|Araly1|335256|fgenesh1_pg.C_scaffold_1001821
Length=2883
Score = 1628 bits (881), Expect = 0.0
Identities = 1021/1088 (94%), Gaps = 11/1088 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAGAAACAGAAAAGTCTCAGTCCTCCGCCGTGTCCTTCCACTGTAACAGTGCGA 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAGGAGAAACAGAAAAGTCTCAGTCCTCCGCCGTGCCCTTCCACTGTAACAGTGCGA 60
Query 61 CGGAATCCTCCGAGGAGAGCTAGAGCAACGCCGTTTACTACTACAACTAAGCCACCTCTC 120
||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||| ||
Sbjct 61 CGGAATCCTTCGAGGAGAGCTAGAGCAACGCCGTATACAACTGCAACTAAGCCACCTTTC 120
Query 121 TCCTCTTTAGCCTGCGCGA-AACCCCACGACGTTCCTACTTTTCCGATCGACGAGATTCT 179
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCTCTTTAGCCTCCGCGATAA-CCCACGACGTTCCTACTTTTCCGATCGACGAGATTCT 179
Query 180 CTCTATCCAAATCCCACAATCCGAACCAAAACCAGCGATTGCAGAGAGTTTGAAGATTTT 239
||| |||||||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 180 CTCCATCCAAATCCCACAATCCGAACCAAAACAATCGATTCCAGAGAGTTTGAAGATTTT 239
Query 240 CCTGAGAATCAAACCATTGAGAA-CTTTCACCAAGGTTACGACCACCACGAAGAG-CAGA 297
||||||||||||||| |||| || | ||||| |||||| ||||| |||||| | ||||
Sbjct 240 CCTGAGAATCAAACCTTTGAAAAGC-TTCACAAAGGTT---ACCACAACGAAG-GCCAGA 294
Query 298 CCTAGAAATGTGTGGCCACAGAATCCTTCGAAGAAGAACAACGCGAAAGAGAATAGAAAT 357
||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||
Sbjct 295 CCTAGAAATGTGTGGCCACAGAAACCTTCGAAGAAGAACATCGCGAAAGAGAACAGGAAT 354
Query 358 CCGGAGATTACGAAGAAGGTTAGGAAGAAGGACGAAGAAGCTTGTATTACTCTCAACGAT 417
|||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct 355 CCGGAGATTACGAAGAAGGTTAAGAAGAAGGAAGAAGAAGCTTGTATCACTCTCAACGAT 414
Query 418 TCTTATTCAGTTACGTTAACTCCGCCTCAATCGTTGCAAGAGCTGAAACGAAGTAAGACT 477
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CCTTATTCAGTCACATTAACTCCGCCTCAATCGTTGCAAGAGCTGAAACGAAGTAAGACT 474
Query 478 GAGGTATACGAAGGGTTTTCTCATGTTTTCCCGGCGGATTGTTCTCAGAACGATGTGTAT 537
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GAAGTATACGAAGGGTTTTCTCATGTTTTCCCGGCGGATTGTTCTCAGAACGATGTGTAT 534
Query 538 GATAAAATGGTTCAACCTTTGTTGGAGGATTTCATGAAAGGGAAAAGTGGAATGTTGGCG 597
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 GATAAAATGGTTCAACCTTTGTTGGAGGATTTCATGAAAGGGAAAAGCGGAATGTTGGCG 594
Query 598 GCGTTGGGACCTAGCGGCTCGGGGAAGACTCATACGGTCTTTGGAAGTTTGAAGGATCCT 657
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 595 GCATTGGGACCTAGCGGCTCGGGGAAGACTCATACGGTCTTTGGAACTTTGAAGGATCCT 654
Query 658 GGAATTGTGCCAATTACACTCCGTCAAATTTTCAAAAAGAA-CGATGAGAGTTGTTCTGG 716
||||||||||||||||||||||||||||||||||| |||| | ||||||||| ||||||
Sbjct 655 GGAATTGTGCCAATTACACTCCGTCAAATTTTCAAGAAGAGTC-ATGAGAGTTCTTCTGG 713
Query 717 ATCTTTGAGGTCATTTAACTTGTCGATATTTGAAATATGTTCTGAACGAGGGAAAGGGGA 776
| ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 714 ACCTTTGAGGTTATTTAACTTGTCCATATTTGAAATATGCTCTGAACGAGGGAAAGGGGA 773
Query 777 GAAAGCATATGATTTGCTAGGTGGTGAAAGCTCTGAATTGTCTGTTCAGCAATCAACCAT 836
|||||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 774 GAAAGCTTATGATTTACTAGCTGGTGAAAGCTCTGAATTGTCTGTGCAGCAATCAACCAT 833
Query 837 CAGGGGTTTGAAAGAGGTTCCAATCCAGAATCTGGAAGAAGCAGAGTCTTTAATTGGACA 896
|||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||||
Sbjct 834 CAGGGGTTTGAAAGAGGTCCCAATCCAGAATTTGGAGGAGGCAGAGTCTTTAATTGGACA 893
Query 897 GGCAATGCTGAAACGTGCAACGGCTACAACAAACTCCAACAGCCAATCAAGTCGCTCACA 956
||||||||||||||||| || ||||| |||||||| || ||||| ||||||||||||||
Sbjct 894 AGCAATGCTGAAACGTGCGACAGCTACTACAAACTCAAATAGCCAGTCAAGTCGCTCACA 953
Query 957 ATGCATCATCAACATACGAGCATCATGCAATGGCTTTTCCAACGAAACAAAATTGCAGTC 1016
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 954 GTGCATCATTAACATACGAGCATCATGCAATGGCTTTTCCAACGAAACAAAAATGCAGTC 1013
Query 1017 TAGTGATGCTATGCTGACAATAGTGGACCTGGCGGGAGCAGAAAGAGAGAAAAGAACAGG 1076
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1014 TAGTGATGCTATGCTGACGATAGTGGACCTGGCGGGAGCAGAAAGAGAGAAAAGAACTGG 1073
Query 1077 AAATCAGG 1084
||||||||
Sbjct 1074 AAATCAGG 1081
Score = 1134 bits (614), Expect = 0.0
Identities = 795/878 (91%), Gaps = 29/878 (3%)
Strand=Plus/Plus
Query 1872 AAGGAATGTCGATGACGATTCTTGCAATCTTATAAAGGCCAGAAGAGAAGCTGGAGCAGA 1931
||||||||||||| | ||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1809 AAGGAATGTCGATAATGATTCTTGCAACCTTATCAAGGCAAGAAGAGAAGCTGGAGCAGA 1868
Query 1932 AGAATCCAGCGAGACTCCTGTGCCTAAAGTGAGGAATGTCGATGATGATTCTTGCAACCT 1991
||||||||||||| |||||||| || | |||||||||||||||||||||||||||||
Sbjct 1869 AGAATCCAGCGAGTCTCCTGTG-CT--A---AGGAATGTCGATGATGATTCTTGCAACCT 1922
Query 1992 TATCAAGGCAAGAAGAGAAGCTGGAGCAGAAGAATCCAGCGAGTCTCCTGTGCTTAGTGT 2051
| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1923 TGTCAAGGCAAGAAGAGAAGCTGGAGCAGAAGAATCGAGCGAGTCTCCTGTGC------- 1975
Query 2052 GCTAAGGAATGTCGATGATGATTCTTGCAACCTTATCGAGGCAAGAAGAGAAGCTGGCTC 2111
| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 1976 -C-AAGGAATGTCGATGATGATTCTTGCAACCTTATCAAGGCAAGAAAAGAAGCTGGAGC 2033
Query 2112 AGAAGAATCCAGCAAGTCTCCTGTCCCTAATG-TG--AGAAATGTCGATGTTGATTCTTG 2168
||||||||||||| |||||||||| ||| ||| || || ||||||||||||||||||||
Sbjct 2034 AGAAGAATCCAGCGAGTCTCCTGTGCCTTATGTTGTAAGGAATGTCGATGTTGATTCTTG 2093
Query 2169 CAACCTTATCAATCCCAGAAGAGAAGCCAGCACAGAAGAATCCAGCGAGTCTCCTGTGCT 2228
|||||||||||| || ||| | ||||||||| |||||||||| ||||||||||||||||
Sbjct 2094 CAACCTTATCAAGCCAAGAGGGGAAGCCAGCGCAGAAGAATCGAGCGAGTCTCCTGTGCC 2153
Query 2229 AAGCAAAAATGTGAAAGATGCTGAACTTGTTCCATGTCACTTGTCTTCTG-AGAATGATG 2287
|||||||||||||||||||||||| ||||||| ||||||||||||||| | |||||||||
Sbjct 2154 AAGCAAAAATGTGAAAGATGCTGAGCTTGTTCGATGTCACTTGTCTTC-GCAGAATGATG 2212
Query 2288 CAGAGCCAAGACAATCTGTTAATTCTGAAGAAAATGTGGGGATTCCTTCTACGATTACTC 2347
| ||||||||| | ||||| |||||||||||||||||||||||||||| | ||| |||||
Sbjct 2213 CTGAGCCAAGAGAGTCTGTCAATTCTGAAGAAAATGTGGGGATTCCTTTTGCGACTACTC 2272
Query 2348 ATGTTGAAGCTGAAGTTACCGACTTT-CAA-AG---A-G--AT-CAGAATCAAGATGATC 2398
||| ||||||||||||||| |||||| ||| || | | || ||||||||||||||||
Sbjct 2273 ATGATGAAGCTGAAGTTACTGACTTTCCAAGAGATCAGGCCATCCAGAATCAAGATGATC 2332
Query 2399 CAACACCTTCACCAGAACAAGTTGAAGTTAGTCAAGATTGCATCAACAGCGGGCTGTCTA 2458
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2333 CAACACCTTCACCAGAACAAGTTGAAGTTAGTCAAGATTGCATCAACAGCCGGATGTCTA 2392
Query 2459 ACGTTCAAACAAAATCCGCAATATCCCGCAGATTTCCAGATTCAGAGAAGCAAGAAAGAA 2518
| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2393 ATGTTCAAACAAAATCCGCAATATCCCGTAGATTTCCAGATTCAGAGAAAAAAGAAAGAA 2452
Query 2519 ACAGAAGACTGTTGCCAGCGTCATCCAGGTCGCTAACTGAGGAAATGAATGACTTGGAGA 2578
|||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |
Sbjct 2453 ACAGAAGACTGTTGCCAGTGTCATCCAGATCGCTAACTGAGAAAATGAATGACTTGGACA 2512
Query 2579 TAAAAGATATCCAGACTGAGAAACAACAGGTTAAAACCACCAACACTCGTGTTCAAAAGA 2638
||||||| | ||||| |||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 2513 TAAAAGAGAACCAGATTGAGAAACCACAGGTTAAAACCGCCAAGACTCGTGTTCAAAAGA 2572
Query 2639 AAGCAGTATCAATCCAAGGTCAGGAAACTGAAGTCCCTCCCCGTGAAGCAGAACCTGCAT 2698
|||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 2573 AAGCAGAATCAATCCAAGGTCAGGAAATTGAAGTCCCTGCCCGTGAAGCAGAACCTGCAT 2632
Query 2699 CAACTAAGAAACAGAAGAATGGACAGAAACCAAAAAGG 2736
||||||||||||||| ||||||||||||||||||||||
Sbjct 2633 CAACTAAGAAACAGAGGAATGGACAGAAACCAAAAAGG 2670
Score = 841 bits (455), Expect = 0.0
Identities = 618/693 (89%), Gaps = 25/693 (4%)
Strand=Plus/Plus
Query 1543 GGAAAGAAGGCTGATCCAACAGACAGATCATCTCCGAGGCTGGAACATGTTGCCCAGGAT 1602
|||||||| ||||||||| ||||| |||||||||| ||||| || | |||| |||| |||
Sbjct 1384 GGAAAGAAAGCTGATCCAGCAGACCGATCATCTCCAAGGCTAGAGCCTGTTTCCCATGAT 1443
Query 1603 AAAAATGAGCGAGAGCACATCATTATGCGGAATTTCTCTAAAGTCTTATGGAATGTTTTG 1662
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1444 AAAAATGAGCGAGAGCACATCATCATGCGGAATTTTTCTAAAGTCTTATGGAATGTTTTG 1503
Query 1663 AAGCAGTGCAACGAGAAACTAAAAGTTGCTGAAGGTGAAATTTTCACTCTCAAGGATAGC 1722
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1504 AAGCAGTACAACGAGAAACTAAAAGTTGCAGAAGGTGAAATTTGCACTCTCAAGGATAGC 1563
Query 1723 CTTCGAAGAGAACAGCTAAAATCTCTTGGATTGGAGACAGAGTTGATCAGTCTCAAGTCC 1782
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1564 CTTCGAAGAGAACAGCTAAAATCTCTTGTTTTGGAGACAGAGTTGAGCAGTCTCAAGTCC 1623
Query 1783 TCTTGTCTGGCACAGCCATGTATACCTGAGGTAGAAGTCATTGTAAATGCAAAAGAACAC 1842
||||| |||||| |||||||||||||||||||||||| | ||||| ||||||||||| ||
Sbjct 1624 TCTTGCCTGGCAGAGCCATGTATACCTGAGGTAGAAGCCTTTGTACATGCAAAAGAAAAC 1683
Query 1843 TTTGAGGTTGACGCG-GCTTTGACTAA--T-GAAAGGAATGTCGATGACGATTCTTGCAA 1898
|||||||||| |||| | | |||| || | | ||||||||| ||||| |||||||||||
Sbjct 1684 TTTGAGGTTGCCGCGAG-TATGACAAATGTGGTAAGGAATGTTGATGATGATTCTTGCAA 1742
Query 1899 TCTTATAAAGGCCAGAAGAGAAGCTGGAGCAGAAGAATCCAGCGAGACTCCTGTGCCTAA 1958
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1743 CCTTATAAAGGTAAGAAGAGAAGCTGGAGCAGAAGAATCCAGCGAGTCTCCTGTGCCTTA 1802
Query 1959 AG-TG--AGGAATGTCGATGATGATTCTTGCAACCTTATCAAGGCAAGAAGAGAAGCTGG 2015
| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 TGTTGTAAGGAATGTCGATAATGATTCTTGCAACCTTATCAAGGCAAGAAGAGAAGCTGG 1862
Query 2016 AGCAGAAGAATCCAGCGAGTCTCCTGTGCTTAGTGTGCTAAGGAATGTCGATGATGATTC 2075
|||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1863 AGCAGAAGAATCCAGCGAGTCTCCTGTGCT-A-------A-GGAATGTCGATGATGATTC 1913
Query 2076 TTGCAACCTTATCGAGGCAAGAAGAGAAGCTGGCTCAGAAGAATCCAGCAAGTCTCCTGT 2135
|||||||||| || ||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 1914 TTGCAACCTTGTCAAGGCAAGAAGAGAAGCTGGAGCAGAAGAATCGAGCGAGTCTCCTGT 1973
Query 2136 CCCTAATGTGAGAAATGTCGATGTTGATTCTTGCAACCTTATCAATCCCAGAAGAGAAGC 2195
|| || | || | |||||||| ||||||||||||||||||||| | |||| ||||||
Sbjct 1974 GCC-AA-G-GA-A--TGTCGATGATGATTCTTGCAACCTTATCAAGGCAAGAAAAGAAGC 2027
Query 2196 CAGCA-CAGAAGAATCCAGCGAGTCTCCTGTGC 2227
| | |||||||||||||||||||||||||||
Sbjct 2028 TGG-AGCAGAAGAATCCAGCGAGTCTCCTGTGC 2059
Score = 425 bits (230), Expect = 7e-118
Identities = 234/236 (99%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 1250 TAACAAGGTACTTGCGAGATTACCTAGAGGGGAAAAAGAGGATGGCTTTGATTTTAACTG 1309
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1148 TAACAAGGTACTTGCGAGATTACCTAGAGGGAAAAAAGAGGATGGCTTTGATTTTAACTG 1207
Query 1310 TCAAAGCAGGGGAAGAGGATTATCTTGATACCTCCTATCTTTTGAGACAAGCATCACCGT 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TCAAAGCAGGGGAAGAGGATTATCTTGATACCTCCTATCTTTTGAGACAAGCATCACCGT 1267
Query 1370 ATATGAAAATCAAATTTGATAACACTGAGGAACCTTGCAACAAGAGACAGCTCAAGACAT 1429
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1268 ATATGAAAATCAAATTTGATAACACCGAGGAACCTTGCAACAAGAGACAGCTCAAGACAT 1327
Query 1430 TTCCAAGAGCTGaaaaaaaCAAGAAGATTAAACTTAGTGCTCCCAAGACTTCCCAA 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 TTCCAAGAGCTGAAAAAAACAAGAAGATTAAACTTAGTGCTCCCAAGACTTCCCAA 1383
Score = 327 bits (177), Expect = 2e-88
Identities = 238/266 (89%), Gaps = 10/266 (4%)
Strand=Plus/Plus
Query 1872 AAGGAATGTCGATGACGATTCTTGCAATCTTATAAAGGCCAGAAGAGAAGCTGGAGCAGA 1931
||||||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||||||
Sbjct 1893 AAGGAATGTCGATGATGATTCTTGCAACCTTGTCAAGGCAAGAAGAGAAGCTGGAGCAGA 1952
Query 1932 AGAATCCAGCGAGACTCCTGTGCCTAAAGTGAGGAATGTCGATGATGATTCTTGCAACCT 1991
|||||| |||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 1953 AGAATCGAGCGAGTCTCCTGTGCC---A---AGGAATGTCGATGATGATTCTTGCAACCT 2006
Query 1992 TATCAAGGCAAGAAGAGAAGCTGGAGCAGAAGAATCCAGCGAGTCTCCTGTGC-TTAGTG 2050
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2007 TATCAAGGCAAGAAAAGAAGCTGGAGCAGAAGAATCCAGCGAGTCTCCTGTGCCTTA-TG 2065
Query 2051 T-GCTAAGGAATGTCGATGATGATTCTTGCAACCTTATCGAGGCAAGAAGAGAAGCTGGC 2109
| | ||||||||||||||| ||||||||||||||||||| || ||||| | ||||| ||
Sbjct 2066 TTG-TAAGGAATGTCGATGTTGATTCTTGCAACCTTATCAAGCCAAGAGGGGAAGCCAGC 2124
Query 2110 TCAGAAGAATCCAGCAAGTCTCCTGT 2135
|||||||||| ||| ||||||||||
Sbjct 2125 GCAGAAGAATCGAGCGAGTCTCCTGT 2150
Score = 326 bits (176), Expect = 8e-88
Identities = 242/272 (89%), Gaps = 12/272 (4%)
Strand=Plus/Plus
Query 1963 AGGAATGTCGATGATGATTCTTGCAACCTTATCAAGGCAAGAAGAGAAGCTGGAGCAGAA 2022
|||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1717 AGGAATGTTGATGATGATTCTTGCAACCTTATAAAGGTAAGAAGAGAAGCTGGAGCAGAA 1776
Query 2023 GAATCCAGCGAGTCTCCTGTGC-TTAGTGT-GCTAAGGAATGTCGATGATGATTCTTGCA 2080
|||||||||||||||||||||| ||| ||| | |||||||||||||| ||||||||||||
Sbjct 1777 GAATCCAGCGAGTCTCCTGTGCCTTA-TGTTG-TAAGGAATGTCGATAATGATTCTTGCA 1834
Query 2081 ACCTTATCGAGGCAAGAAGAGAAGCTGGCTCAGAAGAATCCAGCAAGTCTCCTGTCCCTA 2140
|||||||| ||||||||||||||||||| |||||||||||||| |||||||||| | ||
Sbjct 1835 ACCTTATCAAGGCAAGAAGAGAAGCTGGAGCAGAAGAATCCAGCGAGTCTCCTGTGC-TA 1893
Query 2141 ATGTGAGAAATGTCGATGTTGATTCTTGCAACCTTATCAATCCCAGAAGAGAAGCCAGCA 2200
| | || | |||||||| |||||||||||||||| |||| | ||||||||||| | |
Sbjct 1894 A-G-GA-A--TGTCGATGATGATTCTTGCAACCTTGTCAAGGCAAGAAGAGAAGCTGG-A 1947
Query 2201 -CAGAAGAATCCAGCGAGTCTCCTGTGCTAAG 2231
|||||||||| |||||||||||||||| |||
Sbjct 1948 GCAGAAGAATCGAGCGAGTCTCCTGTGCCAAG 1979
Score = 267 bits (144), Expect = 5e-70
Identities = 168/180 (93%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 2734 AGGAGACTCCAACCTGCTTCTTCTGTGTTATTAACAAGAGAAATAAACACCTTGGAGATA 2793
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 2704 AGGAGACTCCAACCTGCTTCGTCTGTGTTATTAACAAGAGAAATAAACACTTTAGAAATC 2763
Query 2794 GAGGATGATATCGCCGAGCCAAAGGTGAACAGAGGTGGAAAGAAGACGACAGTGTCACAA 2853
||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 2764 GAGGATGATATCGCCGAGCCAAAGGGGACCAGAGGTGGAAAGAAGACGACAATGTCACAA 2823
Query 2854 CCGAGAAGCCAAGGGAGTGTCACTCTCCTCCGCCTCCTCACAAACAACCTTCATCTCTAA 2913
|||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct 2824 CCGAGAAGCCAAGGGAGTGTGACTCTCCTCCGCCTCTTAACAAACAATCTTCATCTCTAA 2883
Score = 217 bits (117), Expect = 5e-55
Identities = 157/176 (89%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 1872 AAGGAATGTCGATGACGATTCTTGCAATCTTATAAAGGCCAGAAGAGAAGCTGGAGCAGA 1931
||||||||||||||| ||||||||||| ||||| ||||| |||| |||||||||||||||
Sbjct 1977 AAGGAATGTCGATGATGATTCTTGCAACCTTATCAAGGCAAGAAAAGAAGCTGGAGCAGA 2036
Query 1932 AGAATCCAGCGAGACTCCTGTGCCTAAAGT-G-A-GGAATGTCGATGATGATTCTTGCAA 1988
||||||||||||| ||||||||||| | || | | |||||||||||| ||||||||||||
Sbjct 2037 AGAATCCAGCGAGTCTCCTGTGCCTTATGTTGTAAGGAATGTCGATGTTGATTCTTGCAA 2096
Query 1989 CCTTATCAAGGCAAGAAGAGAAGCTGGAGCAGAAGAATCCAGCGAGTCTCCTGTGC 2044
|||||||||| ||||| | ||||| | ||||||||||| ||||||||||||||||
Sbjct 2097 CCTTATCAAGCCAAGAGGGGAAGCCAGCGCAGAAGAATCGAGCGAGTCTCCTGTGC 2152
Score = 213 bits (115), Expect = 6e-54
Identities = 164/187 (88%), Gaps = 5/187 (3%)
Strand=Plus/Plus
Query 2049 TGTGCTAAGGAATGTCGATGATGATTCTTGCAACCTTATCGAGGCAAGAAGAGAAGCTGG 2108
|||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1710 TGTGGTAAGGAATGTTGATGATGATTCTTGCAACCTTATAAAGGTAAGAAGAGAAGCTGG 1769
Query 2109 CTCAGAAGAATCCAGCAAGTCTCCTGTCCCTAATG-TG--AGAAATGTCGATGTTGATTC 2165
|||||||||||||| |||||||||| ||| ||| || || ||||||||| ||||||
Sbjct 1770 AGCAGAAGAATCCAGCGAGTCTCCTGTGCCTTATGTTGTAAGGAATGTCGATAATGATTC 1829
Query 2166 TTGCAACCTTATCAATCCCAGAAGAGAAGCCAGCA-CAGAAGAATCCAGCGAGTCTCCTG 2224
||||||||||||||| | |||||||||| | | | ||||||||||||||||||||||||
Sbjct 1830 TTGCAACCTTATCAAGGCAAGAAGAGAAG-CTGGAGCAGAAGAATCCAGCGAGTCTCCTG 1888
Query 2225 TGCTAAG 2231
|||||||
Sbjct 1889 TGCTAAG 1895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112556673975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5