BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20070.1 Length=1114 Score E Sequences producing significant alignments: (Bits) Value Ahg920964 jgi|Araly1|920964|scaffold_102245.1 747 0.0 > Ahg920964 jgi|Araly1|920964|scaffold_102245.1 Length=622 Score = 747 bits (404), Expect = 0.0 Identities = 542/607 (89%), Gaps = 16/607 (3%) Strand=Plus/Plus Query 290 TTATAATCAATGGAAACAATAGCAGTTCAAAATGCACCGGGTAAACAAGTTTCGGGTTTG 349 |||| ||||||||||||||||||||||||| | ||||||||||||| |||||||||||| Sbjct 13 TTAT-ATCAATGGAAACAATAGCAGTTCAACGTCCACCGGGTAAACAGGTTTCGGGTTTG 71 Query 350 AGACCATTCAAGAACCCTAAAAGAAGGAGTTCTCGTGGTTCTCTTTCAAGATCCGGAGGA 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 AGACCATTCAAGAACCCTAAAAGAAGGAGTTCTCGTGGTTCTCTTTCAAGATCCGGAGGA 131 Query 410 AGTTTGGCTCTTCCTCTTAATCCAACGTCGTCTTGGGGATCTTCTCCGGCATATCCGCCG 469 |||||||||||||| |||||||| |||||||||||| || |||||||||||||||||| Sbjct 132 AGTTTGGCTCTTCCGAATAATCCAAAGTCGTCTTGGGGGTCGTCTCCGGCATATCCGCCG 191 Query 470 CCGC-ATAGTTACTCTCAGCCTCCTCTTCTCCCTCTACCACGTGTCAACAGCTCAACTGT 528 |||| | || |||||||||||||||||||||||||| ||||| ||||||||||||||| | Sbjct 192 CCGCCA-AGATACTCTCAGCCTCCTCTTCTCCCTCTGCCACGCGTCAACAGCTCAACTCT 250 Query 529 TCCTCTGCAACGCGTCAACAGCTCTCGACCACGTGTCAACAACAACTCTTCTCTCAATCG 588 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 251 TCCTCTGCAACGCGTCAACAGCTCTCGACCACGAGTCAACAACAACTCTTCTCTCAATTG 310 Query 589 CGTTGCTCAGAC-AAAAGCTATTTCTGAAACACACATGAAGAAAGCAGAGTTCATCGAAT 647 ||| |||||||| |||| ||| |||||||||||| | |||| |||| ||| | |||| Sbjct 311 CGTCGCTCAGACGAAAATAAATT-CTGAAACACACA--A-GAAATCAGACTTCGTTGAAT 366 Query 648 CTG--C-GAGACTGACTCGAACCGGTTCAGTGCCGATCCAGG-CGAACCA-GTTGCGTGA 702 | | | || |||||||||||| |||||||| ||| || || | ||| | || || ||| Sbjct 367 CGGTTCCGATACTGACTCGAACTGGTTCAGTTCCGGCCC-GGTCTAACAACGT-GCATGA 424 Query 703 TTTTCCTGAAGGATTCGATGGCTACCCCGGTCCAGCGATCATGTTATTATCTCCGCCACC 762 ||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||| || || Sbjct 425 TTTTCCTAAAGGATTTGATGGTTACCCAGGTCCAGCGATCATGTTATTATCTCCACCGCC 484 Query 763 GAGTAGTTTGCCCATGCCTAGGTTTTCGATCAAACCGAAGCTTCGTTGCAACGTAGAAGC 822 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 485 GAGTAGTTTGCCCATGCCTAGGTTTTCTATCAAACCGAAGCTTCGTTGCAACGTAGAAGC 544 Query 823 TGCTGGGAAAAGTGACGTAGCTACCAATAACATCCGGCGAGTTTTACAGCTCCGGTGAAA 882 | ||| |||| |||||| | || |||||||||||||||||||||||||||||||||| Sbjct 545 TAATGGCAAAAATGACGTTCCCGCCGATAACATCCGGCGAGTTTTACAGCTCCGGTGAAA 604 Query 883 -GGTGGT 888 |||||| Sbjct 605 AGGTGGT 611 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41515856613 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5