BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20190.1 Length=1139 Score E Sequences producing significant alignments: (Bits) Value Ahg472249 jgi|Araly1|472249|fgenesh2_kg.1__2203__AT1G20190.1 1511 0.0 > Ahg472249 jgi|Araly1|472249|fgenesh2_kg.1__2203__AT1G20190.1 Length=1118 Score = 1511 bits (818), Expect = 0.0 Identities = 1039/1137 (91%), Gaps = 49/1137 (4%) Strand=Plus/Plus Query 2 TACTACATTAGTTTACACTCGCTTCCCACCTTTATTTAAACAACTCTCACCTCCTTCACT 61 ||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 1 TACTACACTAATTTACACTCACTTCCCACCTTTATTTAAACAACTCTC-TCTCCTTCACT 59 Query 62 CGatcatcatcatcatcatc-TC-T--T-TC-TTC----TTCCAAAAGTCATAATCATGT 111 |||||||||||||||||||| || | | || ||| ||| |||| | |||||||||| Sbjct 60 CGATCATCATCATCATCATCATCATAATCTCTTTCTTTGTTCGAAAAATTATAATCATGT 119 Query 112 CAAAGTCTCTAGCTGGATTGGCGGTTTTGGCCGCTCTTTTTATTGCGGTTGATGCGTTTA 171 |||||||||||||||| ||||||||||||||| ||||||||||||||||| | ||||||| Sbjct 120 CAAAGTCTCTAGCTGGCTTGGCGGTTTTGGCCACTCTTTTTATTGCGGTTAACGCGTTTA 179 Query 172 GGCCTTCTGGTTTAACTAATGGTCACGCTACATTCTATGGAGGAAGTGACGCTTCTGGAA 231 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 180 AGCCTTCTGGTTTAACTAATGGTCACGCTACGTTCTATGGAGGAAGTGACGCTTCTGGAA 239 Query 232 CAATGGGTGGAGCTTGTGGTTACGGAGATCTTTACTCGGCGGGGTACGGGACAATGACGG 291 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 240 CAATGGGTGGAGCTTGTGGGTACGGAGATCTTTACTCGGCGGGGTACGGGACAATGACAG 299 Query 292 CGGCGTTAAGCACGGCTCTGTTCAACGACGGAGCTTCTTGCGGAGAATGCTATAGGATAA 351 ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| Sbjct 300 CGGCGTTAAGCACGGCTCTCTTTAACGACGGAGCTTCTTGCGGCGAATGCTATAGGATAA 359 Query 352 CGTGTGATCACGCGGCGGACTCACGGTGGTGCTTGAAAGGAGCTTCTGTGGTTATTACAG 411 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CGTGTGATTACGCGGCGGACTCACGGTGGTGCTTGAAAGGAGCTTCTGTGGTTATTACAG 419 Query 412 CCACTAACTTTTGCCCACCAAACTTTGCTTTGCCTAACAACAACGGTGGTTGGTGCAATC 471 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 420 CCACTAACTTTTGCCCACCAAACTTTGCCTTGCCTAATAACAACGGTGGTTGGTGCAATC 479 Query 472 CGCCGCTTAAACATTTCGACATGGCACAACCCGCTTGGGAAAAGATCGGAATTTACAGAG 531 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 480 CGCCGCTCAAACATTTCGATATGGCACAACCCGCTTGGGAAAAGATCGGAATTTACAGAG 539 Query 532 GAGGAATCGTTCCCGTCGTTTTCCAAAGAGTAAGCTGTTACAAGAAAGGAGGAGTTAGAT 591 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 540 GAGGAATTGTTCCCGTCGTTTTCCAAAGAGTAAGCTGTTACAAGAAAGGAGGAGTGAGAT 599 Query 592 TCAGAATAAACGGAAGAGACTACTTCGAGCTAGTGAATATTCAAAATGTAGGAGGAGCAG 651 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 600 TCAGAATAAACGGAAGAGACTACTTCGAGCTAGTCAACATTCAAAATGTAGGAGGAGCAG 659 Query 652 GTTCTATTAAATCTGTATCCATCAAAGGATCAAAGACTGGTTGGTTAGCCATGTCTCGTA 711 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GTTCGATTAAATCTGTCTCCATCAAAGGATCAAAGACTGGTTGGTTAGCCATGTCTCGTA 719 Query 712 ACTGGGGAGCTAATTGGCAATCGAATGCTTATCTAGATGGTCAAGCTCTCTCTTTCTCCA 771 | |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| Sbjct 720 ATTGGGGAGCTAATTGGCAATCAAATGCTTATCTCGATGGTCAATCTCTCTCTTTCTCCA 779 Query 772 TTACCACTACTGATGGTGCTACTAGAGTCTTTCTCAATGTTGTTCCTTCTTCTTGGTCTT 831 |||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct 780 TTACCACTACCGATGGTGCTACAAGAGTCTTCCTCAATGTTGTTCCTTCTTCCTGGTCTT 839 Query 832 TTGGACAGATTTATTCTTCCAACGTTCAGTTTTAAGttttttttttt-------GT---T 881 ||||||||||||||||||||| ||||||||||||||||||||||||| || | Sbjct 840 TTGGACAGATTTATTCTTCCAGCGTTCAGTTTTAAGTTTTTTTTTTTTTTTTTTGTGGGT 899 Query 882 T-TGTATGAAATATCATTGGCAGTGGTCGCGCTTTGAGTCTGTTTCTTTTCTCCCTGAGC 940 | ||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| Sbjct 900 TCTGTCTGAAATATTATTGGCAGTGGTCGCGCTCTGAGTCTGTTTCTTAACTCCCTGAGC 959 Query 941 GACCCGCCCTCTTTGttttttttATCTTATGGTATGATGGGTCTGTTAATACAAAAGACC 1000 |||||||| |||| || ||| ||||||||||||||||||| |||||| Sbjct 960 GACCCGCC-TCTT------------CT---GGTTTGATGGGTCTGTTAATACAGAAGACC 1003 Query 1001 CGATATGATTTGAGGGTA-TATGATTATATGAA--GT---GTAT-T--GTATTTGAATGT 1051 |||| |||||||||| | |||||||||||||| || |||| | |||||||||||| Sbjct 1004 CGATTTGATTTGAGGAAAATATGATTATATGAAATGTATTGTATATTTGTATTTGAATGT 1063 Query 1052 TTCAGACTCGAAAAAGATTCTGTAGCAAAAGGAgttttaacacatttgtacttggtt 1108 |||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 1064 TTCAAACTCGAAAA-GATTCTGTAGCAAAAGGAGTTT-AACACATTTGTACTTGGTT 1118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42468929538 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5