BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20340.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472262 jgi|Araly1|472262|fgenesh2_kg.1__2216__AT1G20340.1 1194 0.0
> Ahg472262 jgi|Araly1|472262|fgenesh2_kg.1__2216__AT1G20340.1
Length=865
Score = 1194 bits (646), Expect = 0.0
Identities = 798/867 (92%), Gaps = 27/867 (3%)
Strand=Plus/Plus
Query 1 CCACATAAAAACTCATAAA-CTCGATCGAACCAAAGCTAAACGAAAAACTTAAAACCCAA 59
||||||||||||||||||| ||| |||||||||||||||||| || | ||||
Sbjct 1 CCACATAAAAACTCATAAACCTCTATCGAACCAAAGCTAAAC-----AC----GA-CCAA 50
Query 60 ATCTTATCACTACTCTAAAAGAATCTTCATCATGGCCTCAGTAACCTCAGCCACCGTTGC 119
||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 51 ATCTTAT--C-ACTCT-AAAGAATCTTCATCATGGCCTCAGTAACCTCAGCCACCGTCGC 106
Query 120 AATCCCATCTTTCACCGGCCTTAAAGCCTCAACCATCAAATCATCCGCCACCGTCAGAAT 179
|||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct 107 AATCCCATCTTTCACCGGTCTTAAAGCCTCAACCATCAAATCCTCTGCCACCGTTAGAAT 166
Query 180 CCAAACTGCTGCTGTTGCATCACCGAAGCTTACAGTGAAGTCATCTCTAAAGAACTTCGG 239
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 167 CCAGACTGCTGCTGTTGCATCACCGAAGCTCACAGTGAAGTCATCTCTAAAGAACTTCGG 226
Query 240 AGTCGCGGCCGTAGCGGCTGCAGCTTCAATTGCTTTGGCCGGAAACGCCATGGCAATAGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 AGTCGCGGCCGTAGCGGCTGCAGCTTCAATTGCTTTGGCCGGAAACGCCATGGCAATAGA 286
Query 300 AGTTCTCTTGGGAGGAGGGGATGGGTCGTTAGCTTTTATTCCCAACGACTTCTCTATAGC 359
||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||
Sbjct 287 GGTTCTATTGGGAGGAGGAGATGGTTCGTTAGCTTTTGTTCCCAACGACTTCTCTGTAGC 346
Query 360 TAAAGGAGAGAAGATTGTGTTCAAGAACAACGCTGGATACCCACACAATGTTGTCTTCGA 419
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 347 GAAAGGAGAGAAGATTGTGTTCAAGAACAATGCTGGATTCCCACACAATGTTGTCTTCGA 406
Query 420 TGAAGACGAGATCCCAAGTGGCGTCGACGTGGCCAAGATCTCGATGGACGAGCAAGATCT 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 407 TGAAGACGAGATCCCAAGTGGCGTCGATGTGGCCAAGATCTCGATGGACGAGCAAGATCT 466
Query 480 ACTCAACGGTGCGGGAGAGACGTACGAGGTTGCTTTGACCGAGCCAGGGACTTACAGCTT 539
|||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 467 ACTCAACGCTGCCGGAGAGACGTACGAGGTTGCTTTGACCGAGCCTGGGACTTACAGCTT 526
Query 540 CTACTGTGCGCCACATCAGGGTGCTGGTATGGTCGGTAAAGTCACCGTTAACTAAAATGT 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CTACTGTGCGCCGCATCAGGGTGCTGGTATGGTCGGTAAAGTCACCGTTAACTAAAATGT 586
Query 600 GTGTGTGAGTAAGTGAGGGAGTCTCGGACTCAATTAGAGGCTCTTCTTTCACATTCTTAC 659
|| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 587 GTTTGTGAGTAAGTGAGAGAGTCTCGGACTCAAGTAGAGGCTCTTCTTTCACATTCTTAC 646
Query 660 ATTATTACATAAAGTGTTTTGTAATTCTAAAGAGTGTTGAATCGAATGGACCGTGATTGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 ATTATTACATAAAGTGTTTTGTAATTCTAAAGAGTGTTGAATCGAATGGACCGTGATTGT 706
Query 720 TGTTGTACTGTGACTGGTTCCATAAATGGTTTTTCTTGGTTTATA--T-AT--GTAGTCT 774
||| | |||||||||||||||||||| |||| ||||||||||| | || ||||| |
Sbjct 707 TGTA--A-TGTGACTGGTTCCATAAATGATTTT-CTTGGTTTATAAATTATATGTAGT-T 761
Query 775 TA-TGTCTCGCCCTGAAGTTATGATTAATTTAAGTAGGAAAGTGAACTGTTTGAATAAGC 833
| |||||| |||| ||||| |||||||| |||||| |||| || |||||||||||||
Sbjct 762 TCGTGTCTCACCCTAAAGTTCTGATTAATC-AAGTAGAAAAGACAAATGTTTGAATAAGC 820
Query 834 GCTTTTCATAGAGGTATTTAGTTAGAT 860
|||| ||||| |||| |||||| |||
Sbjct 821 GCTTCGCATAGGGGTAATTAGTTTGAT 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5