BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20440.1 Length=1219 Score E Sequences producing significant alignments: (Bits) Value Ahg921008 jgi|Araly1|921008|scaffold_102289.1 1290 0.0 Ahg472273 jgi|Araly1|472273|fgenesh2_kg.1__2227__AT1G20450.2 322 4e-87 > Ahg921008 jgi|Araly1|921008|scaffold_102289.1 Length=851 Score = 1290 bits (698), Expect = 0.0 Identities = 803/854 (94%), Gaps = 5/854 (1%) Strand=Plus/Plus Query 90 AATCAAATCAAGATTAACTATGGCTGAGGAGTACAAGAACAACGTTCCCGAGCACGAGAC 149 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 AATCGAATCAAGATTAACTATGGCTGAGGAGTACAAGAACAACGTTCCCGAGCACGAGAC 61 Query 150 ACCAACGGTCGCAACAGAGGAATCACCAGCGACGACAACAGAGGTTACGGATCGTGGATT 209 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 62 ACCAAAGGTCGCAACAGAGGAATCACCAGCGACGACTACAGAGGTTACGGATCGTGGATT 121 Query 210 GTTTGATTTCTTGGGGAAGAAGGAAGAGGAAGTGAAACCTCAAGAGACAACGACGCTCGA 269 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 122 GTTTGATTTCTTGGGGAAGAAGGAAGAGGAAGTGAAACCTCAAGAGACGACGACGCTCGA 181 Query 270 GTCTGAGTTCGATCATAAGGCTCAGATCTCTGAACCGGAGTTAGCTGCGGAGCACGAGGA 329 | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 182 GCCTGAGTTCGATCACAAGGCTCAGAACTCTGAACCGGAGTTAGCTGCGGAGCACGAGGA 241 Query 330 AGTGAAGGAGAACAAGATTACTCTGCTAGAGGAGCTTCAAGAAAAGACCGAGGAAGATGA 389 |||||||||||||||||||||||| || || ||||||||||| ||||| ||||||||||| Sbjct 242 AGTGAAGGAGAACAAGATTACTCTCCTTGAAGAGCTTCAAGAGAAGACTGAGGAAGATGA 301 Query 390 GGAGAACAAGCCTAGTGTCATCGAAAAGCTTCACCGATCCAACAGCTCTTCTTCCTCTTC 449 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 302 GGAGAACAAGCCTAGTGTCATCGAAAAGCTTCACCGATCCAACGGCTCTGCTTCCTCTTC 361 Query 450 GAGCGATgaagaaggtgaggaaaagaaggagaagaagaagaagatcgttgaaggagagga 509 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 362 GAGCGATGAAGAAGGTGAGGAGAAGAAGGAGAAGAAGAAGA---TCGTTGAAGGAGAGGA 418 Query 510 agataagaaaggactagtggagaagatcaaggagaagCTCCCAGGACACCACGACAAGAC 569 ||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 419 AGAGAAGAAAGGACTAGCGGAGAAGATCAAGGAGAAGCTTCCAGGCCACCACGACAAGAA 478 Query 570 AGCAGAGGATGATGTACCAGTTTCCACTACCATCCCGGTACCAGTGTCGGAGAGTGTGGT 629 | ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 479 ACCAGAGGATGATGTACCAGTTTCCACCACCATCCAGGTACCAGTGTCGGAGAGTGTGGT 538 Query 630 GGAGCATGACCATCCCGAGGAAGAGAAGAAAGGATTAGTTG-AGAAGATCAAGGAGAAGC 688 |||||||||||| ||||||||||||||||||||| ||| | |||||||||||||||||| Sbjct 539 GGAGCATGACCAACCCGAGGAAGAGAAGAAAGGACCAGT-GCAGAAGATCAAGGAGAAGC 597 Query 689 TTCCTGGTCACCACGACGAGAAAGCAGAGGATTCACCAGCTGTCACGTCCACGCCGTTGG 748 ||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||| Sbjct 598 TTCCTGGCCACCACGACAAGACTGCAGAGGATTCACCAGCTGTCACCAGCACGCCGTTGG 657 Query 749 TTGTAACGGAGCATCCGGTGGAGCCTACGACGGAGCTTCCAGTGGAACATCCGGAGGAGA 808 |||||||||||||||| ||||||||||||||||||| ||| | ||| ||||||||||||| Sbjct 658 TTGTAACGGAGCATCCAGTGGAGCCTACGACGGAGCATCCGGAGGAGCATCCGGAGGAGA 717 Query 809 AGAAGGGGATTTTGGAAAAGATCAAAGAGAAGCTTCCAGGTTATCATGCCAAGACCACTG 868 ||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 718 AGAAGGGCATTTTGGGAAAGATTAAAGAGAAGCTTCCAGGTTATCATGCCAAGACCACTG 777 Query 869 AAGAGGAAGTGAAGAAAGAAAAAGAGTCTGATGATTAAGCAAAATGGTTAAAGAATGAAT 928 ||||||||| |||||||| ||||||| |||||| ||||| |||||||||||||||||||| Sbjct 778 AAGAGGAAGAGAAGAAAGTAAAAGAGACTGATGCTTAAGAAAAATGGTTAAAGAATGAAT 837 Query 929 AATGATGTGGGAGT 942 |||||||||||||| Sbjct 838 AATGATGTGGGAGT 851 > Ahg472273 jgi|Araly1|472273|fgenesh2_kg.1__2227__AT1G20450.2 Length=1304 Score = 322 bits (174), Expect = 4e-87 Identities = 640/847 (76%), Gaps = 103/847 (12%) Strand=Plus/Plus Query 164 CAGAGGAATCACCAGCGACGACAACAGAGGTTACGGATCGTGGATTGTTTGATTTCTTGG 223 ||||||||||| || | ||||| | ||||||| ||| || ||| |||| |||||||| Sbjct 425 CAGAGGAATCATCAACCACGACGCCGGAGGTTAAGGAACGGGGAATGTTCGATTTCTT-- 482 Query 224 GGAAGAAGGAA-GAGGAAGTGAAACCTCAAGAGACAACGACGCTCGAGTCTGAGTTCGAT 282 |||||| || |||||||| ||||||||||| || ||||| |||| |||||||||||| Sbjct 483 -GAAGAA-AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTCGAG 540 Query 283 CATAAGGCTCAGATCTCTGAACC-G-G-AGTTAGCT-GCGGAGCACGAGGAAG-TGAA-- 335 || ||| |||||||||||||||| | | ||| | | || ||||||| |||| ||| Sbjct 541 CACAAGACTCAGATCTCTGAACCAGAGCCGTTTG-TGGCCAAGCACGAAGAAGAGGAACT 599 Query 336 GGA-GAAC--AAGATTACTCTGCTAGAGGAGCTTCA--AGAAAAGACCGAGGAAGATGAG 390 | | |||| ||| |||||| || ||| ||||||| || ||| | |||||| || || Sbjct 600 GAAGGAACAAAAGCCTACTCTCCTTGAGAAGCTTCACCAG-AAACA-CGAGGAGGAAGAA 657 Query 391 GAGAACAAGCCTAGTGTCATCGA-AAAGCTTCACCGATCCAACAGCTCTTCTTCCTCT-T 448 || ||||||| | || || |||| ||| || ||||| ||||||||||||||||||||| | Sbjct 658 GAAAACAAGCATGGTCTCCTCGACAAA-CTCCACCGTTCCAACAGCTCTTCTTCCTCTGT 716 Query 449 CG-AGCGATgaagaaggtgag--ga-aaagaaggagaa-g--aagaagaagatcgttgaa 501 | || | |||||| |||||| || ||||||| |||| | ||||| |||||||||||| Sbjct 717 AGAAG-G-TGAAGACGGTGAGAAGAGAAAGAAGAAGAAGGAAAAGAAAAAGATCGTTGAA 774 Query 502 ggaga-g-g-----a-a-g-ata--ag-a--aaggactagtggagaagatcaaggagaag 546 ||||| | | | | | | | || | ||||| || |||| ||||||||||||||| Sbjct 775 GGAGATGTGAAAACAGAGGAAGAGGAGAACCAAGGAGTAATGGACAAGATCAAGGAGAAG 834 Query 547 CTCCCAGGACACCACGACAAGA-CAGCAGAGG--ATGATGTACCAG-TTTCCACTACCAT 602 | || | || ||| || | ||| || || |||||||||||| | ||| ||||| Sbjct 835 TTTCC---ATACGGCGAGAA-ACCAG-AG-GGTCATGATGTACCAGAGGT-CACCACCAT 887 Query 603 CCCGGTACCA-GTGTCGGAGAGTGTGGTGGAGCATGACCATCCCGAGGAAGAGAAGAAAG 661 || | |||| | |||| || | | | | | |||| || ||||||||||||| Sbjct 888 GCCAGCACCACAT-TCGG-TAGAG-GAT--A-AAAAACCA-GAGGAAGAAGAGAAGAAAG 940 Query 662 GATTAGTTGAGAAGATCAAGGAGAAGCTTCCTGGTCACCACGACGAGAAAGCAGAGGATT 721 ||||| | || |||||||||||||||||||| || || || | | ||||| ||||||||| Sbjct 941 GATTAATGGATAAGATCAAGGAGAAGCTTCCAGGCCA-CA-G-CAAGAAACCAGAGGATT 997 Query 722 CACCAGCT-GTC-ACGTCCACGCCGTTGGTTGTAACGGAGCATCCGGTGGAGCCTACGAC 779 || ||| | ||| || | | ||| |||||| ||| |||| | | || | Sbjct 998 CA-CAGGTGGTCAAC-AGCGCACCGCTGGTTGAAAC--AGCA--------A--C-AC--C 1040 Query 780 GGAGCTTCCAGTGGAACATCCGGAGGAGAAGAAGGGGATTT-TGGAAAAGATCAAAGAGA 838 || | | | ||| ||||||||||||||||||||| ||| |||| ||||||||||||| Sbjct 1041 -GA---T-C-GCGGAGCATCCGGAGGAGAAGAAGGGG-TTTATGGATAAGATCAAAGAGA 1093 Query 839 AGCTTCCAGGTTATCATGCCAAGACCACTGAAGAGGAAGTGAAGAAAGAAAAAGAGTCTG 898 ||||||||||||||||||||||||| | || |||||||| ||||||||| ||||||||| Sbjct 1094 AGCTTCCAGGTTATCATGCCAAGACTAGTGGAGAGGAAGAGAAGAAAGATAAAGAGTCTC 1153 Query 899 ATGATTA-AGCAAAATGGTTAAAGAATGAATAAT---GATGTGGGAGTGGGACATTCGCT 954 || | | || |||| | | |||||||||||||| ||||||||||||| ||||| | | Sbjct 1154 -TG-TAAGAGAAAAA-GATGAAAGAATGAATAATAATGATGTGGGAGTGGAACATTTGTT 1210 Query 955 GTGTTTT 961 ||||||| Sbjct 1211 GTGTTTT 1217 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45518762898 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5