BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20450.1 Length=1514 Score E Sequences producing significant alignments: (Bits) Value Ahg472273 jgi|Araly1|472273|fgenesh2_kg.1__2227__AT1G20450.2 1271 0.0 > Ahg472273 jgi|Araly1|472273|fgenesh2_kg.1__2227__AT1G20450.2 Length=1304 Score = 1271 bits (688), Expect = 0.0 Identities = 1040/1196 (87%), Gaps = 80/1196 (7%) Strand=Plus/Plus Query 264 TAAGAAATAGTAAACGTCCTTTGCCATAATTT---AAAAAACTAA-TGAAATCTTTAACA 319 |||||||||||| ||||||||||||||| ||| |||||| ||| | |||||||||||| Sbjct 153 TAAGAAATAGTATACGTCCTTTGCCATATTTTAAAAAAAAAATAATTAAAATCTTTAACA 212 Query 320 GCGTGTGACCTCCGCGTTGGCCTGGACCCTCTACTTCACACACTATAAAGTCCCACTCAT 379 |||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||| Sbjct 213 GCGTGTGACCTCCGCGTTGGCCTGGACCCTCTTCTT--CGCACTATAAAACCCCACTCAT 270 Query 380 CACAACAATATTCATCACACAGCTCTTGAAAACCATCTTAAAGCAACTCAAAGCTCAAAT 439 ||||| ||||||||||||||||||||||||||||||| ||||| |||| | ||||||||| Sbjct 271 CACAATAATATTCATCACACAGCTCTTGAAAACCATCATAAAGAAACTTACAGCTCAAAT 330 Query 440 CGAAA-TTT--CTAGTTTCTCTTTATCATTCACGCTAA--G-T-GTTCAATCGAATCAAG 492 ||||| ||| || |||||||||||||||| || ||| | | || || ||| ||||| Sbjct 331 CGAAATTTTGAATA-TTTCTCTTTATCATTCTCGTTAAGCGTTAATTAAACCGATTCAAG 389 Query 493 ATTAAGTATGGCAGAAGAGTACAAGAACACCGTTCCAGAGCAGGAGACCCCTAAGGTTGC 552 ||||| ||||||||||||||||||||||| |||||| || |||| | | | | | Sbjct 390 ATTAACTATGGCAGAAGAGTACAAGAACAACGTTCC--AG-AGGA-A----TCA---T-C 437 Query 553 AACAGAGGAATCATCGGCGCCAGAGATTAAGGAGCGGGGAATGTTCGATTTCTTGAAGAA 612 ||| || || |||| ||| ||||||| |||||||||||||||||||||||||| Sbjct 438 AAC--------CA-CGACGCCGGAGGTTAAGGAACGGGGAATGTTCGATTTCTTGAAGAA 488 Query 613 AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTTGAGCACAAGAC 672 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 489 AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTCGAGCACAAGAC 548 Query 673 TCAGATCTCTGAACCAGAGTCGTTTGTGGCCAAGCAC---G-A-A-GAA--G-AGGAACA 723 ||||||||||||||||||| ||||||||||||||||| | | | ||| | ||||||| Sbjct 549 TCAGATCTCTGAACCAGAGCCGTTTGTGGCCAAGCACGAAGAAGAGGAACTGAAGGAACA 608 Query 724 TAAGCCTACTCTTCTCGAGCAGCTTCACCAGAAGCACGAGGAGGAAGAAGAAAACAAGCC 783 ||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||| | Sbjct 609 AAAGCCTACTCTCCTTGAGAAGCTTCACCAGAAACACGAGGAGGAAGAAGAAAACAAG-C 667 Query 784 A-AGTCTCCTCGACAAACTCCACCGATCCAACAGCTCTTCTTCCTCTTCGAGTGATgaag 842 | |||||||||||||||||||||| |||||||||||||||| | | || || | || Sbjct 668 ATGGTCTCCTCGACAAACTCCACCGTTCCAACAGCTCTTCTT-C-C-TC---TG-T--AG 718 Query 843 aaggtgaagacggtgag-a-ag-aagaagaaggagaaaaagaagaagattgttgaaggag 899 ||||||||||||||||| | || ||||||||| || ||||||| ||||| |||||||||| Sbjct 719 AAGGTGAAGACGGTGAGAAGAGAAAGAAGAAGAAGGAAAAGAAAAAGATCGTTGAAGGAG 778 Query 900 atcatgtgaaaacagtggaagaagagaaTCAAGGAGTAATGGACAGGATTAAGGAGAAGT 959 |||||||||||| |||||| ||||| |||||||||||||||| ||| |||||||||| Sbjct 779 ---ATGTGAAAACAGAGGAAGAGGAGAACCAAGGAGTAATGGACAAGATCAAGGAGAAGT 835 Query 960 TTCCACT-CGGAGAGAAACCAGGGGGTGATGATGTACCAGTCGTCACCACCATGCCAGCA 1018 ||||| | ||| |||||||||| |||| |||||||||||| |||||||||||||||||| Sbjct 836 TTCCA-TACGGCGAGAAACCAGAGGGTCATGATGTACCAGAGGTCACCACCATGCCAGCA 894 Query 1019 CCACATTCGGTAGAGGATCACAAACCAGAGGAAGAAGAGAAGAAAGGGTTTATGGATAAG 1078 |||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||| Sbjct 895 CCACATTCGGTAGAGGATAAAAAACCAGAGGAAGAAGAGAAGAAAGGATTAATGGATAAG 954 Query 1079 ATCAAGGAGAAGCTTCCAGGCCACAGCAAGAAACCAGAGGATTCACAAGTCGTCAACACC 1138 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | Sbjct 955 ATCAAGGAGAAGCTTCCAGGCCACAGCAAGAAACCAGAGGATTCACAGGTGGTCAACAGC 1014 Query 1139 ACACCGCTGGTTGAAACAGCAACACCGATTGCTGA-CATCCCGGAGGAGAAGAAGGGATT 1197 |||||||||||||||||||||||||||| || || ||||| ||||||||||||||| || Sbjct 1015 GCACCGCTGGTTGAAACAGCAACACCGATCGCGGAGCATCC-GGAGGAGAAGAAGGGGTT 1073 Query 1198 TATGGACAAGATCAAAGAGAAGCTTCCAGGTTATCACGCCAAGACCACTGGAGAGGAAGA 1257 |||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||||| Sbjct 1074 TATGGATAAGATCAAAGAGAAGCTTCCAGGTTATCATGCCAAGACTAGTGGAGAGGAAGA 1133 Query 1258 GAAGAAAGA-AAA-AGTGTCTGATTAAGAGAAAAATATGATAAGAGTGAATAATAATGAT 1315 ||||||||| ||| ||| |||| | |||||||||| |||| |||| |||||||||||||| Sbjct 1134 GAAGAAAGATAAAGAGTCTCTG-T-AAGAGAAAAAGATGA-AAGAATGAATAATAATGAT 1190 Query 1316 GTGGGAGTGGGAC-TTATGTTGt-tttttgtttttt---gttgatcattgtctcttttat 1370 |||||||||| || || |||||| ||||| |||||| |||||||||| |||||||| | Sbjct 1191 GTGGGAGTGGAACATT-TGTTGTGTTTTTTTTTTTTAATGTTGATCATTATCTCTTTTTT 1249 Query 1371 tttgtctttCTA-GCTGT-TC-TCCAAGTTTGTGTTTAGAGTTAGATCATTTGTGT 1423 ||||| ||| || ||||| | ||||||||||||||||| |||||| ||||||||| Sbjct 1250 TTTGTATTT-TAAGCTGTGTTATCCAAGTTTGTGTTTAGTGTTAGACCATTTGTGT 1304 Score = 167 bits (90), Expect = 2e-40 Identities = 135/155 (87%), Gaps = 10/155 (6%) Strand=Plus/Plus Query 79 ACCAAACTTCCATACGTCTCCCGTGAACTAAAAGTACATTACTATGCAAATATCTAA-TA 137 |||||||||| |||| | ||||||||| ||||||||||| ||||||||||||||||| || Sbjct 1 ACCAAACTTCTATACATTTCCCGTGAAATAAAAGTACATGACTATGCAAATATCTAATTA 60 Query 138 -TA--AGTTAACTCTAT-ATCAATATATTAAAAACATAAATCCTTAAATTAAGAAAAA-A 192 || |||||| ||| | ||| ||||||||||||||||||||||||||||||||||| | Sbjct 61 GTATTAGTTAAATCTTTAATCTGTATATTAAAAACATAAATCCTTAAATTAAGAAAAAGA 120 Query 193 TATGG-GGTGATTTCATTGATATTCATCCACCGAC 226 | || ||||||||||| |||||| |||||||||| Sbjct 121 -A-GGTGGTGATTTCAT-GATATTTATCCACCGAC 152 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56678284560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5