BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20510.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472278 jgi|Araly1|472278|fgenesh2_kg.1__2232__AT1G20510.1 2811 0.0
Ahg312965 jgi|Araly1|312965|fgenesh1_pm.C_scaffold_1001745 488 6e-137
> Ahg472278 jgi|Araly1|472278|fgenesh2_kg.1__2232__AT1G20510.1
Length=1824
Score = 2811 bits (1522), Expect = 0.0
Identities = 1642/1702 (96%), Gaps = 0/1702 (0%)
Strand=Plus/Plus
Query 1 GTCAAGTTACATAGAAACAAAATCCATGGCTTCAGTGAATTCTCGAAGTGGTTTCTGCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCAAGTTACATAGAAACAAAATCCATGGCTTCAGTGAATTCTCGAAGTGGTTTCTGCAA 60
Query 61 CTCAAACTCAACATTCTACAGCAAACGAACACCAATCCCACTCCCGCCAAATCCATCACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCAAACTCAACATTCTACAGCAAACGAACACCAATCCCACTCCCGCCAAATCCATCACT 120
Query 121 CGACGTCACTACTTTCATTTCTTCACAAGCTCATCGTGGCCGTATCGCCTTCATCGACGC 180
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 121 CGACGTCACTACTTTCATATCTTCACAAGCTCATCGCGGACGTATCGCCTTCATCGACGC 180
Query 181 TTCCACAGGTCAAAACCTCACCTTCACCGAGCTATGGCGTGCCGTGGAATCCGTCGCCGA 240
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCACTGGTCAAAACCTCACCTTCTCCGAGCTATGGCGTGCCGTGGAATCCGTCGCCGA 240
Query 241 TTGTCTCTCCGAGATAGGGATTCGCAAAGGCCACGTCGTCCTCCTCCTCTCCCCAAACTC 300
||| |||||| | || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TTGCCTCTCCAACATGGGGATTCGCAAAGGCCACGTCGTCCTCCTCCTCTCTCCAAACTC 300
Query 301 AATTTTATTCCCCGTCGTTTGTCTCTCCGTCATGTCACTAGGCGCAATCATCACCACCAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATTTTATTCCCCGTCGTTTGTCTCTCCGTCATGTCACTAGGCGCAATCATCACCACCAC 360
Query 361 GAATCCACTCAACACTTCAAACGAGATCGCTAAACAGATTAAGGATTCAAATCCAGTCCT 420
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 361 GAATCCTCTCAACACTTCAAACGAAATCGCTAAACAGATTAAGGACTCAAATCCAGTCCT 420
Query 421 CGCCTTCACCACATCGCAGCTTCTCCCGAAAATCTCCGCCGCCGCAAAGAAGCTCCCGAT 480
|||||||||||| |||||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 421 CGCCTTCACCACGTCGCAGCTCCTCCCGAAAATCGCCGCCGCAGCAAAGAAGCTCCCGAT 480
Query 481 CGTGCTTATGGACGAGGAACGAGTTGACTCAGTGGGTGATGTGAGAAGATTGGTGGAGAT 540
||| || |||||||||||||||||||||||||||||| | || |||||||| |||||||
Sbjct 481 CGTTCTCATGGACGAGGAACGAGTTGACTCAGTGGGTAAAGTAAGAAGATTAATGGAGAT 540
Query 541 GATGAAGAAGGAACCGAGTGGGAACCGAGTCAAGGAGCGAGTTGACCAGGATGATACGGC 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 541 GATGAAGAAGGAACCGAGTGGGAACCGAGTCATGGAGCGAGTTGACCAGGATGATACAGC 600
Query 601 GACTTTGCTTTACTCTTCAGGAACCACGGGAATGAGCAAAGGAGTGATCTCGTCTCACCG 660
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 GACTTTGCTTTACTCGTCAGGAACCACCGGAATGAGCAAAGGAGTGATCTCGTCTCACCG 660
Query 661 TAACTTAATCGCGATGGTTCAAACCATCGTGAATCGATTTGGATCTGATGATGGAGAGCA 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 TAACTTAATCGCGATGGTTCAAACCATCGTGAATCGATTTGGATCTGACGATGGAGAGCA 720
Query 721 ACGATTCATCTGCACTGTTCCTATGTTTCACATCTACGGTTTAGCTGCGTTCGCTACTGG 780
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 721 ACGATTCATCTGCACCGTTCCTATGTTTCATATCTACGGTTTAGCTGCGTTCGCCACTGG 780
Query 781 ATTACTCGCTTACGGATCTACGATCATCGTTCTCTCTAAATTCGAGATGCACGAGATGAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATTACTCGCTTACGGATCTACGATCATCGTTCTCTCTAAATTCGAGATGCACGAGATGAT 840
Query 841 GTCAGCGATTGGCAAGTATCAAGCCACGTCTTTGCCTCTCGTGCCTCCGATTCTTGTGGC 900
||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 GTCGGCGATTGGTAAGTATCAAGCCACGTGTTTGCCTCTCGTGCCTCCGATTCTTGTGGC 900
Query 901 GATGGTTAACGGTGCAGATCAGATTAAGGCTAAGTATGATTTGAGCTCTATGCATACTGT 960
|||||| ||||| || ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 901 GATGGTCAACGGCGCTGATCAGATTAAGGCTAAGTATGATTTGAGCTCTCTGCATACGGT 960
Query 961 TTTATGCGGCGGAGCTCCGTTGAGTAAGGAAGTGACTGAAGGATTCGCGGAGAAGTATCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTTATGCGGCGGAGCTCCGTTGAGTAAGGAAGTGACTGAAGGATTCGCGGAGAAGTATCC 1020
Query 1021 GACGGTTAAGATTTTACAAGGTTATGGGTTGACTGAGTCAACGGGTATAGGAGCTTCTAC 1080
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1021 GACGGTTAAGATTTTGCAAGGCTATGGGTTGACTGAGTCAACGGGTATAGGAGCTTCAAC 1080
Query 1081 GGATACTGTTGAGGAAAGTCGGAGATACGGTACCGCTGGGAAATTGTCGGCAAGTATGGA 1140
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1081 GGATACTGTAGAGGAAAGTCGGAGATACGGTACCGCCGGGAAATTGTCGGCAAGTATGGA 1140
Query 1141 AGGGAGGATTGTTGATCCGGTTACTGGTCAGATTCTTGGACCGAAACAAACCGGTGAGCT 1200
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1141 AGGGAGGATTGTGGATCCGGTTACTGGTCAGATTCTTGGACCGAACCAAACCGGTGAGCT 1200
Query 1201 TTGGCTCAAGGGTCCTTCCATAATGAAAGGTTATTTCAGCAATGAGGAAGCTACGAGTTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1201 TTGGCTCAAGGGTCCTTCCATAATGAAAGGTTATTTCAGCAATGAGGAAGCTACGAGCTC 1260
Query 1261 GACTCTTGATTCTGAAGGATGGTTAAGAACTGGAGATCTTTGCTATATCGATGAAGATGG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GACTCTTGATTCTGAAGGATGGTTAAGAACTGGAGATCTTTGCTATATCGATGAAGATGG 1320
Query 1321 ATTCATATTCGTGGTTGATCGGTTAAAGGAACTGATCAAGTACAAGGGTTATCAGGTTGC 1380
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1321 ATTCATATTCGTTGTTGATCGGTTAAAGGAACTGATCAAGTACAAGGGTTACCAGGTTGC 1380
Query 1381 TCCAGCTGAGCTAGAGGCTTTGTTGCTTACTCATCCTGAAATCACTGATGCTGCAGTGAT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 TCCAGCTGAGCTAGAGGCTTTGTTGCTTACTCATCCTGAAATCACTGATGCCGCAGTGAT 1440
Query 1441 CCCGTTTCCGGACAAAGAAGTGGGGCAATTTCCAATGGCATACGTCGTAAGGAAAACTGG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CCCGTTTCCGGACAAAGAAGTGGGGCAATTTCCAATGGCATACGTCGTAAGGAAAACTGG 1500
Query 1501 GAGCAGCTTATCAGAGAAGACAATAATGGAGTTTGTAGCGAAACAAGTAGCACCATACAA 1560
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GAGCAGCTTATCAGAGAAGTCGATAATGGAGTTTGTAGCGAAACAAGTAGCACCATACAA 1560
Query 1561 GAGGATACGAAAAGTTGCTTTCGTATCTTCAATACCAAAGAACCCTTCAGGCAAGATTCT 1620
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1561 GAGAATACGAAAAGTTGCTTTCGTATCTTCCATACCAAAGAACCCTTCAGGCAAGATACT 1620
Query 1621 ACGCAAAGATCTCATCAAGATAGCAACTTCCAACTCCAAGCTTTGAAATTATTATGAGAG 1680
|||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1621 ACGCAAGGATCTCATCAAGCTAGCAACTTCCAACTCCAAGCTTTGAAATTGTTATGAGAG 1680
Query 1681 TCAATCTCCATGTATTATTTAT 1702
|||||||||||||||||||||
Sbjct 1681 CCAATCTCCATGTATTATTTAT 1702
Score = 154 bits (83), Expect = 2e-36
Identities = 112/125 (90%), Gaps = 6/125 (5%)
Strand=Plus/Plus
Query 1738 TATGCATCCATGTTGAAATATGACCATGTGGTCCCAAAACACAGAAGATTACAC--ACAT 1795
||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| | ||
Sbjct 1700 TATGCATCCATGTTGAAGTATAACCATGTGGTCTCAAAACACAGAAGATTACACATAAAT 1759
Query 1796 AA-AT-G-G-CCACTATATGGTTTATGTAATAGAGTATATGTTCAAAACATGTTTCTGAT 1851
|| | | | ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1760 AATGTGGAGACCAGTATATGGTTTATGTAATAGAGTATATGTTCAAAACATGTTTATGAT 1819
Query 1852 CAAAT 1856
|||||
Sbjct 1820 CAAAT 1824
> Ahg312965 jgi|Araly1|312965|fgenesh1_pm.C_scaffold_1001745
Length=4674
Score = 488 bits (264), Expect = 6e-137
Identities = 860/1138 (76%), Gaps = 80/1138 (7%)
Strand=Plus/Plus
Query 536 GAGATGATGAAGAAGGAACCGAGTGGGAAC-CGAGTCAAG-GAGCGAGTTGACCAGGATG 593
||||||||||| ||||||| |||| || | |||||| || || |||||| |||| || |
Sbjct 553 GAGATGATGAAAAAGGAACAGAGT-GGTCCGCGAGTC-AGAGACCGAGTTAACCAAGACG 610
Query 594 ATACGGCGACT-TTGCTTTACTCTTCAGGAACCACGGGAATG-AGCAAAGGAGT-GATCT 650
| ||||||| | |||| ||||| || |||||||| |||| | ||||||||||| ||| |
Sbjct 611 AAACGGCGA-TGCTGCTCTACTCGTCGGGAACCACAGGAA-GAAGCAAAGGAGTGGAT-T 667
Query 651 CGTCTCACCGTAACTTAA--TCGC-GATGGTTCAA-A-CCATCG-TGAATCGATTTGGAT 704
|||||||| | ||||||| |||| || | ||| | ||||| | | | |||| ||
Sbjct 668 CGTCTCACAGAAACTTAATCTCGCACATAG--CAAGATACATCGCCG-AGCCATTT-GAG 723
Query 705 CTGATGATGGAGAGCAACGATTCATCTGCACTGTTCCTATGTTTCACATCTACGGTTTAG 764
| | || || || ||| ||||||| ||||| ||||| |||| ||| || |||
Sbjct 724 C-CA-AAT---CAG--AC-TTTCCTCTGCACCGTTCCGATGTTCCACACCTATGGATTA- 774
Query 765 CTGCGT-T-CGCTACTGGATTA-C-TCGC-TTACGGATCTACGATCATCGTTCTCTC-TA 818
||| | | ||| | ||| | | | || ||| || || || | | ||||| | |
Sbjct 775 CTG-ATCTGCGCCA-TGG-CCACCGTAGCGTTA-GGTTCGACTCTGGTAATTCTC-CGGA 829
Query 819 AATTCGAGATGCACGAGATGATGTCAGCGATTG-GCAAGTATCA-AGCCACGTCTTTGCC 876
| || || | ||||| ||| || | || || | | || || || ||||||| || ||
Sbjct 830 AGTTTGATCTCCACGATATGTTGGCGGCAATCGAG-AAATA-CAGAGCCACGACTCTG-G 886
Query 877 TCTC-GTGCCTCCGATTCTTG-TGGCGATGGTTAACGG-TGCAGATCAGATTAAGGCTAA 933
| || | ||| ||| || ||| | || ||| | ||||| | |||| | || ||||| ||
Sbjct 887 TTTCGGCGCCGCCGGTT-TTGATAGCTATGATCAACGGCT-CAGAGCTTATCAAGGCCAA 944
Query 934 GTATGATTTGAGCTCTATGCATACTGTTTTATGCGGCGGAGCTCCGTTGAGTAAGGAAGT 993
||| ||||||| ||| || | || ||| || ||| ||| | |||||||| ||||| ||
Sbjct 945 GTACGATTTGACCTCCCTGAAAACGGTTAGATCCGGTGGATCCCCGTTGAGCAAGGAGGT 1004
Query 994 GACTGA-AGGATTCGC-GGAGAAGTATCCGACGGTTAAGATTTTACAAG-GTTATGGGTT 1050
|| || | | ||| | ||||| ||||| |||||| | ||||| |||| | || | ||
Sbjct 1005 TACAGATA-GCTTC-CTTGAGAAATATCCAACGGTTGATATTTTTCAAGCG-TACGCTTT 1061
Query 1051 GACTGAGTC-AACGGGTATAGGAGCTTCTACGGATACTGTTGAGGAAAGTCGGAGATACG 1109
|| || || ||| | || ||||| | ||| | || ||||| ||||||||||| |
Sbjct 1062 AACGGAATCAAAC-AGCGCGGGGGCTTCCATAGATTCGGTGGAGGAGAGTCGGAGATATG 1120
Query 1110 GTACCGCTGGGAAATTGTCGGCAAGTATGGAAGGGAGGATTGTTGATCC-GGTTACTGGT 1168
|| ||| |||||| |||||| | | |||||| || |||||| ||||| |||| | |||
Sbjct 1121 GTGCCGTTGGGAAGTTGTCGTCCGGCGTGGAAGCGATGATTGTAGATCCGGGTT-CGGGT 1179
Query 1169 CAGATTCTT-GGACCGAAACAAACCGGTGAGCTTTGGCTCAAGGGTCCTTCCATAATG-- 1225
| || |||| || ||| ||||| || |||||||||||||| |||| |||| ||
Sbjct 1180 CGGA-TCTTGGGTGAGAACCAAACGGGAGAGCTTTGGCTCAAAAGTCCCGCCAT--TGCA 1236
Query 1226 AAAGGTTATTTCAGCAATGAGGAAGCTACGAGTTCG-A-CTCTTGATTCTGAAGGATGG- 1282
||||||||||| || || || |||||||| | | | || || |||| |||||||||
Sbjct 1237 AAAGGTTATTTTAGAAACGAAGAAGCTAC-A-AAAGAAGCTTTTAATTCAGAAGGATGGC 1294
Query 1283 TTAAGAACTGGAGATCTTTGCTATATCGATGAAGATGGA-TTCATATTCGTGGTTGATCG 1341
|||| |||||||||||| ||||| ||||| | |||||| ||| | || || || |||||
Sbjct 1295 TTAA-AACTGGAGATCTCTGCTACATCGACCATGATGGATTTC-TTTTTGTTGTGGATCG 1352
Query 1342 GTT-AAAGGAACTGATCAAGTACAAGGGTTATCAGGTTGCTCCAGCTGAGCTAGAGGCTT 1400
|| ||| ||| | ||||| ||||| | ||| ||||| |||||||||| ||||| ||||
Sbjct 1353 ATTGAAA-GAAGTTATCAAATACAAAGCTTACCAGGTCCCTCCAGCTGAACTAGAAGCTT 1411
Query 1401 TGTTGCTTACTCATCCTGAAATCACTGATGCTGCAGTGATCCCGTTTCCGGACAAAGAAG 1460
|| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1412 TGCTGCTCCCTCATCCTGAAATCACTGATGCCGCAGTGATCCCGTTTCCGGACAAAGAAG 1471
Query 1461 TGGGGCAATTTCCAATGGCATACGTCGTAAGGAAAACTGGGAGC-AGCTTATCAGAGAAG 1519
||||||||||||| ||||| | | | ||| | |||| ||| ||| | |||||||||||||
Sbjct 1472 TGGGGCAATTTCCGATGGCGTGCATTGTACGAAAAAGTGGAAGCTA-CTTATCAGAGAAG 1530
Query 1520 ACAATAATGGAGTTTGTAGCGAAACAAGTAGCACCATACAAGAGGATACGAAAAGTTGCT 1579
| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||| |
Sbjct 1531 TCGATAATGGAGTTTGTAGCGAAACAAGTGGCACCGTACAAGAAGATACGAAAAGT-GAA 1589
Query 1580 -TTCGTATCTTCAATACCAAAGAACCCTTCAGGCAAGATTCTACGCAAAGATCTCATC 1636
||| | ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1590 ATTCATGTCTTCTATACCAAAGAATCCTTCAGGCAAGATTCTACGTAAAGATCTCATC 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5