BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20580.1
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335306 jgi|Araly1|335306|fgenesh1_pg.C_scaffold_1001871 566 1e-160
Ahg476783 jgi|Araly1|476783|fgenesh2_kg.2__1913__AT1G76300.1 390 7e-108
> Ahg335306 jgi|Araly1|335306|fgenesh1_pg.C_scaffold_1001871
Length=429
Score = 566 bits (306), Expect = 1e-160
Identities = 324/333 (97%), Gaps = 0/333 (0%)
Strand=Plus/Plus
Query 96 ATGAGCCGAAGTTTGGGAATACCGGTGAAGCTTCTTCACGAGGCCTCAGGTCATATCGTG 155
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1 ATGAGCCGAAGTTTGGGAATACCGGTGAAGCTTCTTCACGAGGCTTCTGGTCATATCGTG 60
Query 156 ACGGTGGAGCTAAAGAGCGGCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAAC 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGGTGGAGCTAAAGAGCGGCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAAC 120
Query 216 TGGAACTGTCAGCTCGAGGATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCTT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAACTGTCAGCTCGAGGATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCTT 180
Query 276 GAGCATGTCTTCATTCGAGGCAGTAAAGTCAGGTTTATGGTCATACCAGACATTCTCAAA 335
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATTCTCAAG 240
Query 336 CATGCTCCAATGTTCAAGCGGTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTGGGT 395
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 241 CATGCTCCAATGTTCAAGCGCTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTAGGT 300
Query 396 GTTGGCAGAGGTAGAGGTGCAATGCGAGGGAAA 428
|||||||||||| ||| ||||||||||||||||
Sbjct 301 GTTGGCAGAGGTCGAGCTGCAATGCGAGGGAAA 333
> Ahg476783 jgi|Araly1|476783|fgenesh2_kg.2__1913__AT1G76300.1
Length=708
Score = 390 bits (211), Expect = 7e-108
Identities = 523/664 (79%), Gaps = 59/664 (9%)
Strand=Plus/Plus
Query 56 AAAGGAGAAGGTTTTCAATTAGGGTTTTGTAG-AGAGAAAGATGAGCCGAAGTTTGGGAA 114
||||| ||||| |||||||||||||| || | | | |||||||| || |||||||| |
Sbjct 9 AAAGG-GAAGG--TTCAATTAGGGTTTAGT-GAATCG-AAGATGAGTCGGAGTTTGGGGA 63
Query 115 TACCGGTGAAGCTTCTTCACGAGGCCTCAGGTCATATCGTGACGGTGGAGCTAAAGAGCG 174
| |||||||||||||||||||| | || |||||||| ||| |||||||| | |||||||
Sbjct 64 TTCCGGTGAAGCTTCTTCACGAATCGTCCGGTCATATTGTGTCGGTGGAGATGAAGAGCG 123
Query 175 GCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAACTGGAACTGTCAGCTCGAGG 234
| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 124 GTGAGCTGTACAGAGGAAGCATGATCGAGTGTGAGGATAATTGGAACTGTCAGCTCGAGA 183
Query 235 ATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCTTGAGCATGTCTTCATTCGAG 294
| || || |||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 184 ACATCACCTATAAGGCCAAGGATGGTAAGGTATCACAGCTTGAACATGTCTTCATTCGAG 243
Query 295 GCAGTAAAGTCAGGTTTATGGTCATACCAGACATTCTCAAACA-TGCTCCAATGTTCAAG 353
||||| |||||||||||| |||||||||||||| || ||| | ||||||||||||||||
Sbjct 244 GCAGTTTAGTCAGGTTTATAGTCATACCAGACATGCT-AAAGAATGCTCCAATGTTCAAG 302
Query 354 CGGTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTGGGTGTTGGCAGAGGTAGAGG- 412
| | | | ||| ||||||||| ||||| ||||| ||||| |||||||| |||||
Sbjct 303 -GAT--G-T--TAGGGGCAAGGGAAAAAGCTCTTCACTAGGTGTAGGCAGAGGAAGAGGC 356
Query 413 --TGCAATGCGAGGGAAACCGGCTGCCGGGCCCGGG-CGTGGAACTGGAGGAAGGGGAGC 469
||||||||||| ||| || | | || | || |||||||| ||||||||||||||
Sbjct 357 GCTGCAATGCGAGCCAAA--GG-T-CAAGGTACTGGACGTGGAACAGGAGGAAGGGGAGC 412
Query 470 GGTACCACCTGTGAGGAGAT-GATTGATTTTACGCTCA-ACATGTAAGCTTTGATTCTGG 527
|| |||||||||||||||| | || | || || || | ||||| |||| || ||| |
Sbjct 413 CGTGCCACCTGTGAGGAGATAGTTT-AGTTAACCCTGGTA-ATGTA-GCTTCGACTCTTG 469
Query 528 -GATAGTCTTTCTGT-GATATCCAGGTGAAAGCCGCCTTTCTTG-GTTCTGTCA-TTAAT 583
|| | ||| ||| | |||||| | ||| ||||| ||| | | ||||| ||| |
Sbjct 470 AGACAATCT--CTGCAG-TATCCATGAGAAT-CCGCCAA-CTTCAGCT-TGTCACTTA-T 522
Query 584 GC-TTTAGAGA-ACAC--T--GTAAAA-C-CAAACAAGA-GA--G--AG--A-GATATCC 627
|| |||| || |||| | |||||| | | ||||||| || | || | || |
Sbjct 523 GCATTTA-AGGTACACAGTAAGTAAAATCTCTAACAAGAAGACAGGGAGGGAAGAGAGAA 581
Query 628 AGATGCACTACTAGTTCTGTATTTTGGGTTACCAAGATGTTTGAATCATTGACAAGTTTT 687
||| | || | |||||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct 582 AGAGGGAC--C-AGTTCTGTGTTTTGGGTTACTAAGATGTTTGAAACATTGACATGTTTT 638
Query 688 CGTT 691
|||
Sbjct 639 -GTT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28096589829
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5