BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20600.1 Length=893 Score E Sequences producing significant alignments: (Bits) Value Ahg493975 jgi|Araly1|493975|fgenesh2_kg.7__3408__AT4G03170.1 785 0.0 Ahg949550 jgi|Araly1|949550|scaffold_801437.1 743 0.0 Ahg473790 jgi|Araly1|473790|fgenesh2_kg.1__3744__AT4G03170.1 302 4e-81 Ahg335306 jgi|Araly1|335306|fgenesh1_pg.C_scaffold_1001871 97.1 2e-19 > Ahg493975 jgi|Araly1|493975|fgenesh2_kg.7__3408__AT4G03170.1 Length=726 Score = 785 bits (425), Expect = 0.0 Identities = 508/548 (93%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 96 TGAAGAGGATATAGATGATGAAGACGATATAGATGATGAGGTTGCGTC-CCTTCCATTAT 154 ||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| Sbjct 90 TGAAGAGGATATAGATGATGAAGACGATACAGATGATGAGGTTGCGTCGAC-TCCATTAT 148 Query 155 TACTAGTAAGCC-AAGCTAATCAAAAGCAGTCTAGGAAGAGGGAAGaaaaaactgaaaaa 213 ||| | |||||| ||| | ||||||||||||||||||||||||||||||| |||| ||| Sbjct 149 TACAAATAAGCCAAAG-TCGTCAAAAGCAGTCTAGGAAGAGGGAAGAAAAATCTGACAAA 207 Query 214 aaTCAACCTAAGAGGGTTAAGAATCAGAACATCATGAAAATAAATATCCATGACTTTTCA 273 |||||||||||||||||||| || || ||||||||||||||||||||| ||||||||||| Sbjct 208 AATCAACCTAAGAGGGTTAAAAAACATAACATCATGAAAATAAATATCGATGACTTTTCA 267 Query 274 GAAGAAACTCTGAGGTTAATTGAGGAT-TGGTACAACGCTGAACTCGATCCACAGGATAT 332 |||||||||||||||| |||||||| | |||||||| | ||||||||||||||| ||||| Sbjct 268 GAAGAAACTCTGAGGTCAATTGAGG-TATGGTACAAAGATGAACTCGATCCACAAGATAT 326 Query 333 ATTCGGCGATGATGAGGTGACGAGGCGATTCAGCCGACCGATAAAGAAGCAGTTGATGTC 392 |||||||||| |||||||||||| || ||||||| |||||||||||||||||||||||| Sbjct 327 ATTCGGCGATAATGAGGTGACGAAGCAATTCAGCAAACCGATAAAGAAGCAGTTGATGTC 386 Query 393 GAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAGCAAGTGAAGGAGAA 452 |||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 387 GAGCGACGTCGATAAAGATCAATGCAGGCTCATGTTATCTAAGGAGCAAGTGAAGGAGAA 446 Query 453 GATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATGTTTCGGTGTA 512 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 447 GATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGAGTTGATGTTTCGGTGTA 506 Query 513 TGGACCAGACGGGGAAGTTCAACAGATGAAGTTCAAGATGTGGAATGGGGATAAAACACC 572 |||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 507 TGGACCAGACGGGGCAGTTCAAAAGATGAAGTTCAAGATTTGGAATGGGGATAAAACACC 566 Query 573 TGTCTTAACTTCAGGGTGGATGCAGTTTGTGGCAGATTATGGTCTTTTGAAGACTTCTGA 632 ||| ||||||||||| |||| ||||||||||||||||||||||||| ||| ||||||||| Sbjct 567 TGTGTTAACTTCAGGATGGAAGCAGTTTGTGGCAGATTATGGTCTTGTGATGACTTCTGA 626 Query 633 TTTTGTCA 640 |||| ||| Sbjct 627 TTTTATCA 634 > Ahg949550 jgi|Araly1|949550|scaffold_801437.1 Length=805 Score = 743 bits (402), Expect = 0.0 Identities = 506/555 (91%), Gaps = 11/555 (2%) Strand=Plus/Plus Query 96 TGAAGAGGATATAGATGATGAAGACGATATAGATGATGAGGTTGCGTCC-CTTCCATTAT 154 |||||||||||||||||||||||| |||| ||||||||||||||||||| | |||||||| Sbjct 158 TGAAGAGGATATAGATGATGAAGATGATACAGATGATGAGGTTGCGTCCAC-TCCATTAT 216 Query 155 TACTAGTAAGCCAAGCTAATCAAAAGCAGTCTAGGAAGAGGGAAGaaaaa--a-ctgaaa 211 ||| ||||||||||||| |||||||| ||||||||||||||||||||||| | |||| | Sbjct 217 TACAAGTAAGCCAAGCTCATCAAAAGAAGTCTAGGAAGAGGGAAGAAAAAGTATCTGACA 276 Query 212 aaaaTCAACCTAAGAGGGTTAAGAATCAGAACATCATGAAAATAAATATCCATGACTTTT 271 ||||||||||||||||||||||||| |||| ||||||||||||||||||| | ||||||| Sbjct 277 AAAATCAACCTAAGAGGGTTAAGAAACAGAGCATCATGAAAATAAATATCAAAGACTTTT 336 Query 272 CAGAAGAAACTCTGAGGTTAATTGAGGAT-TGGTACAACGCTGAACTCGATCCACAGGAT 330 ||||||| |||| ||||| |||||||| | |||||||| |||||| | ||||||||||| Sbjct 337 CAGAAGAGACTCGGAGGTCAATTGAGG-TATGGTACAAAGCTGAAATTGATCCACAGGAA 395 Query 331 ATATTCGGCGATGATGAGGTGACGAGGCGATTCAGCCGACCGATAAAGAAGCAGTTGATG 390 |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 396 ATATTCGGCGATAATGAGGTGACGAGGCAATTCAGCAAACCGATAAAGAAGCAGTTGATG 455 Query 391 TCGAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAGCAAGTGAAGGAG 450 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 456 TCGAGCGACGTCGATAAAGATCAAAGCAGGCTCATGTTATCTAAGGAGCAAGTGAAGGAG 515 Query 451 AAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATGTTTCGGTG 510 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 516 AAGATGCTTCCTTTTCTAGAAGAATCAGAGAATCCGGTAAAGGGGGTTGATGTTTCGGTG 575 Query 511 TATGGACCAGACGGGGAAGTTCAACAGATGAAGTTCAAGATGTGGAATGGGGATAAAACA 570 |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| Sbjct 576 TATGGACCAGACGGAAAAGTTCAACAGATGAAGTTCAAGTTCTGGAATGGGGATAAAACA 635 Query 571 CCTGTCTTAACTTCAGGG-TGGATGCAGTTTGTGGCAGATTATGGTCTTTTGAA-GACTT 628 ||||| |||||| | ||| |||| | ||||||| ||| | | ||||||| | || ||||| Sbjct 636 CCTGTATTAACTAC-GGGATGGAAGGAGTTTGTTGCAAAATGTGGTCTTCT-AATGACTT 693 Query 629 CTGATTTTGTCACTG 643 | ||||||||||||| Sbjct 694 CCGATTTTGTCACTG 708 > Ahg473790 jgi|Araly1|473790|fgenesh2_kg.1__3744__AT4G03170.1 Length=687 Score = 302 bits (163), Expect = 4e-81 Identities = 193/207 (93%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 96 TGAAGAGGATATAGATGATGAAGACGATATAGATGATGAGGTTGCGTCC-CTTCCATTAT 154 ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| Sbjct 105 TGAAGAGGATATAGATGATGAAGACGATATAGATGATGAAGTTGCGTCCACT-CCATTAT 163 Query 155 TACTAGTAAGCCAA-GCTAATCAAAAGCAGTCTAGGAAGAGGGAAGaaaaaactgaaaaa 213 ||| |||||||||| | | ||||||||||||||||||| |||||||||||| |||| ||| Sbjct 164 TACAAGTAAGCCAAAG-TCATCAAAAGCAGTCTAGGAAAAGGGAAGAAAAATCTGATAAA 222 Query 214 aaTCAACCTAAGAGGGTTAAGAATCAGAACATCATGAAAATAAATATCCATGACTTTTCA 273 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 223 AATCAACCTAAGAGGGTTAAGAAACAGAACATCATGAAAATAAATATCAATGACTTTTCA 282 Query 274 GAAGAAACTCTGAGGTTAATTGAGGAT 300 ||||||||||||||| |||||||||| Sbjct 283 AAAGAAACTCTGAGGTCAATTGAGGAT 309 Score = 191 bits (103), Expect = 8e-48 Identities = 115/121 (95%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 384 GTTGATGTCGAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAGCAAGT 443 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 426 GTTGATGTCGAGCGACGTCGATAAAGATCAAAGCAGGCTCATGTTATCTAAGGAGCAAGT 485 Query 444 GAAGGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATGT 503 ||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| Sbjct 486 GAATGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAAGGGTTTGTTGT 545 Query 504 T 504 | Sbjct 546 T 546 > Ahg335306 jgi|Araly1|335306|fgenesh1_pg.C_scaffold_1001871 Length=429 Score = 97.1 bits (52), Expect = 2e-19 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 643 GATGGTAAGGTATCACAGCTTGAGCATGTCTTCATTCGAGGCAGCAAAGTCAGGT 697 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 160 GATGGTAAGGTATCACAGCTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGT 214 Score = 82.4 bits (44), Expect = 5e-15 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 711 TTAGAGAACACTGTAAAACCAAACAAAG-GAGAACAAGAGAGATATGTCCAGATGCACTA 769 |||| | || |||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 370 TTAGGGTACGCTGTAAAACCAAAC-AAGAGAGAACAAGAGAGATATGTCCAGATGCACTA 428 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33090691956 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5