BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20630.1
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312977 jgi|Araly1|312977|fgenesh1_pm.C_scaffold_1001757 2516 0.0
> Ahg312977 jgi|Araly1|312977|fgenesh1_pm.C_scaffold_1001757
Length=2946
Score = 2516 bits (1362), Expect = 0.0
Identities = 1430/1464 (98%), Gaps = 0/1464 (0%)
Strand=Plus/Plus
Query 192 GTTCGTCCTTCAAGCGCTCATGATTCCCCTTTCTTCACTACAAACTCGGGTGCTCCTGTC 251
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1483 GTTCGTCCTTCAAGCGCTCATGATTCCCCTTTCTTCACTACAAACTCTGGTGCTCCTGTG 1542
Query 252 TGGAACAACAACTCTTCTTTGACTGTCGGAACTCGAGGTCCAATCCTTCTGGAGGACTAT 311
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1543 TGGAATAACAACTCTTCTTTGACTGTCGGAACTCGAGGTCCAATTCTTCTGGAGGACTAT 1602
Query 312 CATCTGCTTGAGAAACTCGCTAACTTTGACAGGGAGCGGATTCCTGAGAGGGTTGTTCAT 371
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1603 CATCTGCTTGAGAAACTCGCCAACTTTGACAGGGAGCGGATTCCTGAGAGGGTTGTTCAT 1662
Query 372 GCCAGGGGAGCCAGTGCTAAGGGTTTCTTTGAAGTCACTCATGACATTACCCAACTTACT 431
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1663 GCCAGGGGAGCCAGTGCTAAGGGTTTCTTTGAAGTCACTCATGACATTACACAACTTACT 1722
Query 432 TCTGCTGATTTTCTTCGAGGACCTGGTGTTCAGACTCCTGTTATCGTTCGTTTCTCAACT 491
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1723 TCTGCTGATTTTCTTCGAGGACCTGGTGCTCAGACTCCTGTTATCGTTCGTTTCTCAACT 1782
Query 492 GTCATCCATGAGCGTGGCAGTCCCGAGACTCTCAGAGATCCCCGTGGTTTTGCTGTTAAG 551
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1783 GTCATCCATGAGCGTGGCAGTCCCGAGACTCTCAGAGATCCTCGTGGTTTTGCTGTTAAG 1842
Query 552 TTTTACACCAGAGAGGGGAACTTTGATCTTGTTGGGAACAACTTCCCTGTATTCTTCGTC 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 TTTTACACCAGAGAGGGGAACTTTGATCTTGTTGGGAACAACTTCCCTGTATTCTTCGTC 1902
Query 612 CGTGATGGAATGAAATTCCCTGACATGGTCCATGCATTGAAACCGAATCCCAAGTCTCAC 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1903 CGTGATGGAATGAAATTCCCTGACATGGTCCATGCATTGAAACCGAATCCCAAGTCCCAC 1962
Query 672 ATTCAGGAGAACTGGAGGATACTGGACTTCTTCTCCCACCACCCAGAGAGTTTGCACATG 731
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 ATTCAGGAGAACTGGAGAATACTGGACTTCTTCTCCCACCACCCAGAGAGTTTGCACATG 2022
Query 732 TTTTCATTTCTCTTTGATGATCTCGGTATCCCACAGGACTACAGGCACATGGAAGGCGCT 791
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 TTTTCGTTCCTCTTTGATGATCTCGGTATCCCACAGGACTACAGGCACATGGAAGGCGCT 2082
Query 792 GGGGTCAACACTTACATGCTAATCAACAAAGCTGGAAAAGCTCACTATGTGAAATTCCAC 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 GGGGTCAACACTTACATGCTAATCAACAAAGCTGGAAAAGCTCACTATGTGAAATTCCAC 2142
Query 852 TGGAAGCCGACTTGTGGGATCAAATGCCTGTCGGATGAGGAAGCTATCAGAGTTGGAGGA 911
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 TGGAAGCCTACTTGTGGGATCAAATGCCTGTCGGATGAGGAAGCTATCAGAGTTGGAGGA 2202
Query 912 GCCAATCACAGCCATGCCACCAAAGATCTCTATGACTCGATCGCAGCCGGGAACTATCCG 971
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2203 TCCAATCACAGCCATGCTACTAAAGATCTCTATGACTCGATCGCAGCCGGGAACTATCCA 2262
Query 972 CAGTGGAATCTCTTCGTTCAGGTGATGGATCCTGCCCATGAAGACAAATTTGACTTCGAT 1031
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 2263 CAGTGGAATCTCTTCGTTCAGGTGATGGATCCTGCCCACGAAGACAAATTCGATTTCGAT 2322
Query 1032 CCGCTTGATGTCACAAAGATCTGGCCTGAAGATATCTTGCCTTTACAACCTGTTGGTCGC 1091
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 2323 CCGCTTGATGTCACAAAGATTTGGCCTGAAGATATCTTGCCTCTACAACCTGTTGGCCGC 2382
Query 1092 TTGGTCTTGAACAAAAACATCGACAACTTCTTTAATGAGAACGAACAGATTGCATTCTGT 1151
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2383 TTGGTCTTGAACAAGAACATCGACAACTTCTTTAATGAGAACGAACAGATTGCTTTCTGT 2442
Query 1152 CCTGCTCTTGTGGTTCCAGGCATCCACTATTCAGATGATAAGCTACTCCAGACCCGGATC 1211
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2443 CCTGCTCTTGTGGTTCCAGGCATCCACTATTCAGATGATAAACTACTCCAGACCCGGATC 2502
Query 1212 TTCTCCTACGCTGATAGTCAGAGACACCGTCTTGGACCAAACTATCTGCAACTACCTGTT 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2503 TTCTCCTACGCTGATAGTCAGAGACACCGTCTTGGACCAAACTATCTGCAACTACCTGTC 2562
Query 1272 AATGCCCCTAAATGTGCTCACCACAACAATCACCATGATGGTTTTATGAACTTCATGCAC 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2563 AATGCCCCTAAATGTGCTCACCACAACAATCACCATGATGGTTTTATGAACTTCATGCAC 2622
Query 1332 AGGGATGAGGAGGTCAATTACTTCCCTTCAAGGTTGGATCCAGTTCGCCATGCCGAAAAA 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2623 AGGGATGAGGAGGTCAATTACTTCCCTTCAAGGTTGGATCCAGTTCGCCATGCCGAAAAA 2682
Query 1392 TACCCTACAACTCCTATTGTCTGCTCTGGAAATCGTGAGAAGTGCTTCATCGGGAAGGAG 1451
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2683 TACCCTACAACTCCTATTGTATGCTCTGGAAATCGTGAGAAGTGCTTCATTGGGAAGGAG 2742
Query 1452 AACAACTTCAAGCAACCAGGGGAGAGATACCGGTCCTGGGATTCAGACAGGCAAGAACGA 1511
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2743 AACAACTTCAAGCAACCAGGGGAGAGATACCGGTCCTGGGATTCGGACAGGCAAGAGCGG 2802
Query 1512 TTCGTGAAGCGTTTTGTTGAAGCGCTTTCGGAGCCTCGTGTCACGCACGAAATCCGCAGC 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2803 TTCGTGAAGCGTTTTGTTGAAGCGCTTTCGGAGCCTCGTGTCACGCACGAAATCCGCAGC 2862
Query 1572 ATTTGGATCTCTTACTGGTCTCAGGCAGACAAATCTCTGGGACAGAAACTAGCAACTCGT 1631
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2863 ATTTGGATCTCTTACTGGTCTCAGGCAGACAAATCACTGGGACAGAAACTAGCGACTCGT 2922
Query 1632 CTTAACGTGAGGCCAAACTTCTGA 1655
||||||||||||||||||||||||
Sbjct 2923 CTTAACGTGAGGCCAAACTTCTGA 2946
Score = 839 bits (454), Expect = 0.0
Identities = 1135/1458 (78%), Gaps = 70/1458 (5%)
Strand=Plus/Plus
Query 217 CCCCTTTCTTCACTACAAACTCG-GGTGCTCCTGTCTGGAACAACAACTCTTCTTTGACT 275
|||| |||| ||| |||||| | ||| |||| |||| ||||||| |||||| | ||
Sbjct 62 CCCCATTCTACACCACAAAC-GGTGGTACTCCAGTCTCCAACAACATCTCTTCCCTCACC 120
Query 276 GTCGGA-ACTCGAGGTCCAATCCTTCTGGAGGACTATCATCTGCTTGAGAAACTCGCTAA 334
||||| | ||||||| | ||||| |||||||| |||||| | ||||| | || ||
Sbjct 121 ATCGGAGA-GAGAGGTCCGGTTCTTCTTGAGGACTACCATCTGATCGAGAAGGTTGCCAA 179
Query 335 CTTTGA-CAGGGAGCGGATTCCTGAGAGGGTTGTTCATGCCAGGGGAGCCAGTGCTAAGG 393
||| | ||| ||| |||| |||||||| || ||||||||||| ||| |||||||||||
Sbjct 180 -TTTCACCAGAGAGAGGATCCCTGAGAGAGTGGTTCATGCCAGAGGAATCAGTGCTAAGG 238
Query 394 GTTTCTTTGAAGTCACTCATGACATTACCCAA-CTTACTTCTGCTGATTTTCTTC-GAGG 451
|||||||||||||||| ||||||||| | || || |||| ||||||||||| || |||
Sbjct 239 GTTTCTTTGAAGTCACCCATGACATT-TCAAACCTCACTTGTGCTGATTTTC-TCAGAGC 296
Query 452 ACCTGGTGTTCAGACTCCTGTTATCGTTCGTTTCTCAACTGTCATCCATGAGCGTGGC-A 510
||||||||||| ||||| ||||| || |||||||| || || |||| || ||| || |
Sbjct 297 TCCTGGTGTTCAAACTCCGGTTATTGTCCGTTTCTCCACCGTTGTCCACGAACGT-GCTA 355
Query 511 GTCCCGAGACTC-TCAGAGATCCCCGTGGTTTTGCTGTTAAGTTTTACACCAGAGAGGGG 569
|||| || || | | || ||| |||||||| ||||| |||||||||||||||||||||
Sbjct 356 GTCCTGAAAC-CATGAGGGATATTCGTGGTTTCGCTGTCAAGTTTTACACCAGAGAGGGG 414
Query 570 AACTTTGATCTTGTTGGGAACAACT-TCCCTGTATTCTTCGTCCGTGATGGAATGAAATT 628
|||||||||||||||||||||||| |||| || |||||| ||||||| || || ||||
Sbjct 415 AACTTTGATCTTGTTGGGAACAACACTCCC-GTGTTCTTCATCCGTGACGGGATTCAATT 473
Query 629 CCCTGACATGGTCCATGCATTGAAACCGAATCCC-AAGTCTCACATTCAGGAGAACTGGA 687
||| || | ||||| || ||||||| || ||| || | |||| || ||| ||||||
Sbjct 474 CCCCGATGTTGTCCACGCCCTGAAACCAAA-CCCGAAAACAAACATCCAAGAGTACTGGA 532
Query 688 GGATACTGGACTTCTTCTCCCACCACCCAGAGAGTTTGC--ACATGTTTTCATTTCTCTT 745
|||| ||||||| | | |||||| ||||||||||||| ||||| | | | | ||
Sbjct 533 GGATTCTGGACTACATGTCCCACTTGCCAGAGAGTTTGCTCACATGGTG-C-TGGATGTT 590
Query 746 TGATGATCTCGGTATCCCACAGGACTACAGGCACATGGAAGGCGCTG-GG-GTCAACACT 803
||||||| | ||||| ||||| || |||||||||||||| || | | || ||| ||||
Sbjct 591 TGATGATGTTGGTATTCCACAAGATTACAGGCACATGGA-GG-GTTTCGGTGTCCACACC 648
Query 804 TACA-TGCTAATCAACAAAGCTGGAAAAGCTCACTATGTGAAATTCCACTGGAAGCCGAC 862
|||| | || | |||| ||||||||| || || |||||| ||||||||||| || ||
Sbjct 649 TACACT-CTTGTTGCCAAATCTGGAAAAGTTCTCTTTGTGAAGTTCCACTGGAAACCAAC 707
Query 863 TTGTGGGATCAA-A-TGCCTGTCGGATGAGGAAGCTATCAGA--GTTGGAGGAGCCAATC 918
||| |||||||| | | | || | ||||| || || | || ||||||||||||||||
Sbjct 708 TTGCGGGATCAAGAAT-C-TGACTGATGAAGAGGCCA--AGGTTGTTGGAGGAGCCAATC 763
Query 919 ACAGCCATGCCACCAAAGATCT-CTATGACT-CGATCGCAGCCGGG-AACTATCC-GCAG 974
||||||| ||||| || ||||| | | || | | || || | ||| ||||| || | ||
Sbjct 764 ACAGCCACGCCACTAAGGATCTGC-ACGA-TGCCATTTCATC-GGGCAACTACCCCG-AG 819
Query 975 TGGAATCTCTTCGTTCAGGTGATGGATCCTGCCCATGAAGACAAATTTGACTTCGATCCG 1034
||||| || ||| | ||| ||||||||||| |||| || || |||||||| || ||
Sbjct 820 TGGAAACTTTTCATCCAGACCATGGATCCTGCGGATGAGGATAAGTTTGACTTTGACCCA 879
Query 1035 CTTGATGTCACAAAGATCTGGCCTGAAGATATCTTGCCTTTACAACCTGTTGGTCGCTTG 1094
|||||||| || |||||||||||||| ||||| |||||| | ||||| ||||||||||||
Sbjct 880 CTTGATGTGACCAAGATCTGGCCTGAGGATATTTTGCCTCTGCAACCGGTTGGTCGCTTG 939
Query 1095 GT-CTTGAACAAAAACATCGACAACTTCTTTAATGAGAAC-GAACAGATTGCATTCTGTC 1152
|| || ||||| | ||| ||||||||||| || || ||| || ||| | || ||| |
Sbjct 940 GTTCT-GAACAGGACCATTGACAACTTCTTCAACGA-AACTGAGCAGCTCGCTTTCAACC 997
Query 1153 CTGCTCTTGTGGTTCCAGGCATCCACTATTCAGATGATAAGCTACTCCAGACCCGGATCT 1212
| | |||||||||||| || ||| |||| ||||| || ||||| |||||| ||||||
Sbjct 998 CGGGTCTTGTGGTTCCTGGAATCTACTACTCAGACGACAAGCTGCTCCAGTGTAGGATCT 1057
Query 1213 TCTCCT-ACGCTGATAGTCAGAGACACCGTCTTGGACCAAACTATCTGCAACTACCTGTT 1271
| | || | | ||| | ||||||||| ||||||||||| || |||||||| ||||| ||
Sbjct 1058 T-TGCTTATGGTGACACTCAGAGACATCGTCTTGGACCGAATTATCTGCAGCTACCAGTG 1116
Query 1272 AATGC-CCCTAAATGTGCTCACCACAACAATCACCATGATGGTTTTATGAACTTCATGCA 1330
||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1117 AATGCTCCC-AAATGTGCTCACCACAACAATCACCATGAAGGTTTTATGAACTTCATGCA 1175
Query 1331 CAGGGATGAGGAGGTCAATTACTTCCCTTCAAGGTTGGATCCAGTTCGCCATGCCGAAAA 1390
||| || |||||| ||||||||| ||| |||| ||| ||||| || ||| |||||| ||
Sbjct 1176 CAGAGACGAGGAGATCAATTACTACCCCTCAAAGTTTGATCCTGTCCGCTGTGCCGAGAA 1235
Query 1391 ATAC-CCTA-CAACTCCTATTGTC-TGCTCTGGAAATCGTGAG-AA-GTGCTTCATCGGG 1445
| | |||| | || | | || | | |||||| || || || |||| ||||| |
Sbjct 1236 AG-CTCCTATCC-CTACAAAC-TCCTACACTGGAA-TCC-GAACAAAGTGCGTCATCAAG 1290
Query 1446 AAGGAGAACAACTTCAAGCAACCAGGGGAGAGATACCGGTCCTGGG-ATTCAGACAGGCA 1504
|| |||||||||||||| || | || || || ||| | || |||| | ||||||||||
Sbjct 1291 AAAGAGAACAACTTCAAACAGGCTGGAGACAGGTACAGATCATGGGCAC-CAGACAGGCA 1349
Query 1505 AGAACGATTCGTGAAGCGTTTTGTTGA-AGCGCTTTCGGAGCCTCGTGTCACGCACGAAA 1563
||| || || || ||| | | ||||| | || |||||||| ||| |||| ||||| |
Sbjct 1350 AGACCGGTTTGTTAAGAGATGGGTTGAGATT-CTGTCGGAGCCACGTCTCACCCACGAGA 1408
Query 1564 TCCGCAGCATTTGGATCTCTTACTGGTCTCAGGCAGA-CAAATCTCTGGGACAGAAACTA 1622
||||| |||| ||||||||||||||||||||||| || | | ||||| |||||||||||
Sbjct 1409 TCCGCGGCATCTGGATCTCTTACTGGTCTCAGGCTGATCGA-TCTCTTGGACAGAAACTT 1467
Query 1623 GCAA-CTCGTCTTAACGT 1639
|||| | ||||| |||||
Sbjct 1468 GCAAGC-CGTCTGAACGT 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76066219265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5