BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G20650.1 Length=1828 Score E Sequences producing significant alignments: (Bits) Value Ahg472299 jgi|Araly1|472299|fgenesh2_kg.1__2253__AT1G20650.1 2455 0.0 Ahg909257 jgi|Araly1|909257|Al_scaffold_0002_2338 717 0.0 > Ahg472299 jgi|Araly1|472299|fgenesh2_kg.1__2253__AT1G20650.1 Length=1715 Score = 2455 bits (1329), Expect = 0.0 Identities = 1619/1748 (93%), Gaps = 64/1748 (4%) Strand=Plus/Plus Query 80 TACTGTTTAAACCTCAGtttttttGTTGTTGTTATAAGATCCTTGTCATTTTTTGTCGTG 139 |||||||||||||| ||||||| || || || | ||||||||||||||||||||||| Sbjct 18 TACTGTTTAAACCTTTTTTTTTTTTTTTTTTTTTTTTGATCCTTGTCATTTTTTGTCGTG 77 Query 140 ATTAGATGTAATTTGTATAATTTTAGTAACTCTTCAGtttttttttGTTTTAAAAATATA 199 |||||||| ||||||||||||||||||||||||||| |||||| |||||| |||| | Sbjct 78 ATTAGATGGAATTTGTATAATTTTAGTAACTCTTCA----TTTTTT-TTTTAACAATA-A 131 Query 200 TTTTCTCTCTCTCTGTCTTCCTGCAATCTATCGCCGGCCGATTCAATAATTTCGCTTTAC 259 |||| |||||||||||||||||||||||||||| | | |||||||||| |||||||||| Sbjct 132 TTTT-TCTCTCTCTGTCTTCCTGCAATCTATCG-C-G--GATTCAATAA-TTCGCTTTAC 185 Query 260 TCTGCCAAAAAAGTTTGTTCTTTTGTTTTCTGGGATTATCCAAAGAGAAGAAACAGAGGA 319 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 186 TCTGCCAAAAAAGTTTGTTCTTTTGTTTTCTGGGATTATCCAAGGAGAAGAAACAGA-GA 244 Query 320 AATCAATCTCTTTTTTAGTTTCAGACCCTAAATCCTAGGTTTTGAAGTTTTGTTTCTTTA 379 ||||||||||||| |||||||||||||| |||||| | || | || |||| Sbjct 245 AATCAATCTCTTTCTTAGTTTCAGACCCAAAATCC-------T--AG----G-TT-TTTA 289 Query 380 GTAATTTTGTCAGGTTTTGTGTCTGGTGTTGGGATTTTTCGGAGCTTGG-TTTCT--TGA 436 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 290 GTAATTTTGTCAGGTTTTGTGTCTGGTGTTGGGA-TTTTCGGAGCTTGGTTTTCTCAAAA 348 Query 437 ACCAGCTCCATTTTCTAAAAATTCCTTCTTTAAATCCCCATTGTTGTAAGTCTTAAAGAA 496 |||||||||||||||| | ||| |||||||||||| || | ||| | Sbjct 349 ACCAGCTCCATTTTCT----A----------AAA---CCATTGTTGTAA-TCCTGAAG-A 389 Query 497 AAAAGAAGATGACTTGTTGTTTCTCTTGTTTGAATCCTCGAACCAAGGACATAAGAGTCG 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 390 AAAAGAAGATGACTTGTTGTTTCTCTTGTTTGAATCCTCGAACCAAGGACATAAGAGTCG 449 Query 557 ACATTGATAACGCTCGATGCAACTCTCGTTACCAAACCGATTCATCAGTTCATGGAAGTG 616 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 450 ACATTGATAACGCTCGATGCAACTCTCGTTACCAAACCGATTCGTCAGTTCATGGAAGTG 509 Query 617 ATACAACAGGAACAGAGTCGATTTCGGGTATCTTAGTAAATGGTAAAGTGAATAGTCCGA 676 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 510 ATACAACAGGAACAGAGTCGATTTCGGGTATTTTAGTAAACGGTAAAGTGAATAGTCCGA 569 Query 677 TACCTGGTGGTGGAGCTCGGAGCTTCACGTTCAAGGAGTTAGCTGCAGCTACAAGAAACT 736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 570 TACCTGGTGGTGGAGCTCGGAGCTTCACGTTCAAGGAGTTAGCTGCAGCTACAAGAAATT 629 Query 737 TCCGGGAAGTTAATTTGCTCGGAGAAGGAGGTTTTGGCAGAGTTTATAAGGGACGTTTAG 796 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 630 TCCGGGAAGTGAATTTGCTCGGAGAAGGAGGTTTTGGCAGAGTTTATAAGGGACGTTTAG 689 Query 797 ATTCAGGACAAGTAGTGGCTATTAAGCAATTGAATCCAGATGGGCTTCAAGGGAACCGAG 856 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 690 ATTCAGGACAAGTAGTGGCTATTAAGCAATTGAATCCAGATGGTCTTCAAGGCAACCGAG 749 Query 857 AGTTTATAGTAGAAGTTCTTATGCTTAGCTTATTGCATCATCCCAATCTCGTTACATTGA 916 | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 750 AATTTATAGTAGAAGTTCTTATGCTTAGCTTATTGCATCATCCGAATCTTGTTACATTGA 809 Query 917 TCGGTTACTGTACTTCTGGTGATCAAAGACTTCTTGTCTATGAATACATGCCAATGGGAA 976 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 810 TTGGTTACTGTACTTCTGGTGATCAGAGACTTCTTGTCTATGAATACATGCCAATGGGAA 869 Query 977 GCTTAGAAGATCACCTTTTTGATCTTGAGTCTAATCAAGAACCATTAAGCTGGAATACTC 1036 ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| Sbjct 870 GCTTAGAAGATCACCTTTTTGATCTCGAGTCCAATCAAGAACCATTAAGTTGGAATACTC 929 Query 1037 GAATGAAAATCGCGGTTGGTGCAGCTCGAGGAATAGAGTATCTTCACTGCACAGCTAACC 1096 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 930 GAATGAAAATCGCGGTTGGTGCAGCTCGCGGAATAGAGTATCTTCACTGCACAGCTAACC 989 Query 1097 CGCCAGTGATTTACCGTGATTTGAAATCCGCAAACATATTGTTAGATAAAGAGTTCAGTC 1156 |||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| | Sbjct 990 CGCCAGTGATTTACCGCGACTTGAAATCTGCAAACATATTGTTAGACAAAGAGTTCAGCC 1049 Query 1157 CAAAACTCTCGGATTTCGGATTGGCGAAACTCGGTCCAGTTGGTGATCGAACTCATGTAT 1216 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1050 CAAAACTCTCGGATTTCGGATTGGCGAAACTCGGTCCAGTAGGTGATCGAACTCATGTAT 1109 Query 1217 CGACTCGTGTCATGGGAACTTACGGTTACTGTGCTCCTGAATACGCAATGAGCGGGAAAT 1276 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1110 CGACTCGTGTCATGGGAACTTACGGTTACTGTGCTCCCGAATACGCAATGAGCGGGAAGT 1169 Query 1277 TAACTGTTAAATCGGATATCTACTGCTTCGGTGTAGTGTTGCTTGAGCTGATTACTGGGA 1336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1170 TAACTGTTAAATCGGATATCTACTGCTTCGGTGTAGTGTTGCTTGAGCTGATTACTGGGA 1229 Query 1337 GAAAAGCTATTGATTT-AGGTCAAAAGCAAGGCGAGCAGAATCTTGTTACTTGGTCACGT 1395 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1230 GAAAAGCTATTGATTTGAG-TCAAAAGCAAGGCGAGCAGAATCTTGTTACTTGGTCACGT 1288 Query 1396 CCATACCTCAAGGATCAGAAGAAGTTTGGACATTTAGTGGATCCGTCTCTACGAGGAAAA 1455 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1289 CCATACCTCAAGGATCAGAAGAAGTTTGGACATTTAGTGGATCCGTCTCTTCGAGGAAAA 1348 Query 1456 TACCCAAGACGGTGTTTAAACTATGCGATTGCGATTATTGCAATGTGTCTTAATGAAGAA 1515 ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| Sbjct 1349 TACCCAAGACGGTGTTTAAACTATGCGATTGCGATAATCGCAATGTGTCTTAACGAAGAA 1408 Query 1516 GCTCATTATCGACCGTTCATAGGTGACATAGTTGTGGCACTAGAGTACTTAGCCGCACAG 1575 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1409 GCTCATTATCGACCATTCATAGGTGACATAGTTGTGGCACTTGAGTACTTAGCCGCACAG 1468 Query 1576 AGCAGATCTCATGAAGCTCGAAACGTCTCATCACCGTCACCAGAGATTTCAAGAACGCCG 1635 ||| |||||||||||||||||||||||||||| |||||||||||| || ||||||||||| Sbjct 1469 AGCCGATCTCATGAAGCTCGAAACGTCTCATCCCCGTCACCAGAGGTTACAAGAACGCCG 1528 Query 1636 CGACGAGACTTGTAAAA-ACTCAAAAA--C---AGCTTTT---AAGAATTTCAGTTTGGT 1686 ||||||||||||||||| || |||| | | ||||||| ||||||||||||||| | Sbjct 1529 CGACGAGACTTGTAAAACACACAAACAGTCTTGAGCTTTTGTTAAGAATTTCAGTTTGAT 1588 Query 1687 GTTGTGTAAAAATGGttttttttGTTTCTTTCTCAG-AAAACAATATATGTTTGGTAAAT 1745 ||| |||||||||| |||||||| ||| |||| | | |||||||||||| |||||||||| Sbjct 1589 GTTATGTAAAAATGTTTTTTTTTTTTTTTTTC-CTGGAAAACAATATATATTTGGTAAAT 1647 Query 1746 GTTTCGTTATTAGTCTCTTTTACTTGATGTATATGGCAATTATGGAAACAATTAAAGTTC 1805 |||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1648 GTTTTGTTTTTAGTTTCTTTTACTTGATGTATATGACAATTATGGAAACAATTAAAGTTC 1707 Query 1806 TTTTATAT 1813 |||||||| Sbjct 1708 TTTTATAT 1715 > Ahg909257 jgi|Araly1|909257|Al_scaffold_0002_2338 Length=1146 Score = 717 bits (388), Expect = 0.0 Identities = 804/1002 (80%), Gaps = 40/1002 (4%) Strand=Plus/Plus Query 616 GATACAACAGGAACAGAGTCGATTTCGGGTATCTTAGTAAATGGTAAAGTGAATAGTCCG 675 ||| ||| ||| |||| ||| | || || || ||||| ||||| ||||||||||| || Sbjct 103 GATCCAAGAGGGACAGGGTCAAAATCTGGCATTTTAGTTAATGGGAAAGTGAATAGCCCT 162 Query 676 ATACCTGGTGGTGGAGCTCGGAGCTTCACGTTCAAGGAGTTAGCTGCAGCTA-CAAGAAA 734 | ||| || ||||| |||||||| |||||||||||||||||||| || || | |||| || Sbjct 163 AAACCGGGAGGTGGCGCTCGGAGTTTCACGTTCAAGGAGTTAGCCGCCGCCACCAAG-AA 221 Query 735 CTTCCGGGAAGTTAATTTGCTCGGAGAAGGAGGTTTTGGCAGAGTTTATAAGGGACGTTT 794 |||||||| || ||| || | ||| ||||||| ||||| || || || ||||||||||| Sbjct 222 TTTCCGGGAGGTGAATATGATTGGAAAAGGAGGCTTTGGGAGTGTATACAAGGGACGTTT 281 Query 795 AGATTCAGGACAAGTAGTGGCTATTAAGCAATTGAATCCAGATGGGCTTCAAGGGAACCG 854 ||||||||||||||| ||||| || |||||||| ||||||||||||| |||||| || | Sbjct 282 AGATTCAGGACAAGTGGTGGCGATCAAGCAATTAAATCCAGATGGGCATCAAGGAAATCA 341 Query 855 AGAGTTTATAGTAGAAGTTCTT-ATGCTTAGCTTATTGCATCATCCCAATCTCGTTACAT 913 ||| || ||||| || || || ||||||||| | || |||||||| ||||| || || | Sbjct 342 AGAATTCATAGTTGAGGT-CTGCATGCTTAGCGTCTTTCATCATCCAAATCTTGTAAC-T 399 Query 914 -TGATCGGTTACTGTACTTCTGGTGATCAAAGACTTCTTG-TCTATGAATACATGCCAAT 971 | ||||||||||| |||||||||| ||| |||||| ||| | ||||||||||||||||| Sbjct 400 CTAATCGGTTACTGCACTTCTGGTGCTCAGAGACTT-TTGGTTTATGAATACATGCCAAT 458 Query 972 GGGAAGCTTAGAAGATCACCTTTTTGATCTTGAGTCTAATCAAGAA-CCATTAAGCTGGA 1030 ||| |||||||||||||| |||| |||||||||| || |||| || || |||||||| Sbjct 459 GGGTAGCTTAGAAGATCATCTTTATGATCTTGAGCCTGATCA-GATTCCGCTAAGCTGGT 517 Query 1031 ATACTCGAATGAAAATCGCGGTTGGTGCAGCTCGAGGAATAGAGTATCTTCACTGCACAG 1090 |||| ||||||||||||||||||||||| ||||| || || ||||||||||| || | | Sbjct 518 ATACCCGAATGAAAATCGCGGTTGGTGCTGCTCGTGGGATTGAGTATCTTCATTGTAAAA 577 Query 1091 CTAA-CCCGCCAGTGATTTACCGTGATTTGAAATCCGCAAACATATTGTTAGATAAAGAG 1149 ||| ||| | |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 578 -TAAGCCCATCTGTGATTTACCGTGATTTGAAATCCGCAAACATTTTGTTAGATAAAGAA 636 Query 1150 TTCAG--TCCAAAACTCTCGGA-TTTCGGATTGGCGAAACTCGGTCCAGTTGGTGATC-G 1205 || || || ||| ||||| || ||| ||| | || || ||||||| || || || | | Sbjct 637 TTTAGCGTC-AAA-CTCTCTGACTTT-GGACTCGCCAAGGTCGGTCCTGTGGG-GAACCG 692 Query 1206 AACTCATGTATCGACTCGTGTCATGGGAACTTACGGTTACTGTGCTCCTGAATACGCAAT 1265 || ||||| || ||||| |||||||| |||||||| ||||||||||| ||||| ||||| Sbjct 693 GACACATGTGTCCACTCGAGTCATGGGTACTTACGGATACTGTGCTCCAGAATATGCAAT 752 Query 1266 GAGCGGGAA-ATTAACTGTTAAATCGGATATCTACT-GCTTCGGTGTAGTGTTGCTTGAG 1323 |||||| || |||||| |||| ||||||||||| | |||||||||||||||||||||| Sbjct 753 GAGCGG-AAGATTAACCATTAAGTCGGATATCTA-TAGCTTCGGTGTAGTGTTGCTTGAA 810 Query 1324 CTGATTACTGGGAGAAAAGCTATTGATTT-AGGTCAAAAGCAA--GGCGAGCAGAATCTT 1380 |||||| |||| || || || |||||||| || | ||| ||| || |||||| | ||| Sbjct 811 CTGATTTCTGGCAGGAAGGCCATTGATTTGAG-T-AAAC-CAAACGGAGAGCAGTACCTT 867 Query 1381 GTTACTTGGTCACGTCCATACCTCAAGGATCAGAAGAAGTTTGGACATT-TAGTGGATCC 1439 ||| ||||| | || || || |||||||||| ||||| ||||||| || |||| || || Sbjct 868 GTTGCTTGGGCTCGACCGTATCTCAAGGATCCTAAGAAATTTGGAC-TTCTAGTTGACCC 926 Query 1440 GTCT-CTACGAGGAAAATACCC-AAGACGGTGT-TTAAACTATGCGATTGCGATTATTGC 1496 || | ||||| ||||| | | | |||| ||||| |||| ||| |||||||| || | | Sbjct 927 GT-TGCTACGGGGAAAGTTCTCGAAGA-GGTGTCTTAA-CTACGCGATTGCTATAACCG- 982 Query 1497 A-ATGTGTCTTAATGAAGAAGCTCATTATCGACCGTTCATAGGTGACATAGTTGTGGCAC 1555 | ||||| || ||||| ||||| || | || || ||||| || | || |||||| Sbjct 983 AGATGTGCCTAAATGACGAAGCGAATCACCGGCCAAAAATAGGAGATGTGGTGGTGGCAT 1042 Query 1556 TAGAGTACTTAGCCGCACAGAGCAGATCTCATGAAGCTCGAA 1597 | |||||| ||||| | ||||||| |||| |||||| ||||| Sbjct 1043 TTGAGTACATAGCCTCTCAGAGCAAATCTTATGAAGATCGAA 1084 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68638621490 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5