BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20693.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472301 jgi|Araly1|472301|fgenesh2_kg.1__2255__AT1G20693.2 1232 0.0
Ahg472304 jgi|Araly1|472304|fgenesh2_kg.1__2258__AT1G20696.3 527 6e-149
> Ahg472301 jgi|Araly1|472301|fgenesh2_kg.1__2255__AT1G20693.2
Length=842
Score = 1232 bits (667), Expect = 0.0
Identities = 806/867 (93%), Gaps = 34/867 (4%)
Strand=Plus/Plus
Query 5 TTTCGTGCGAAATTTCAAtttttttGCAATATCCTTTATTGATTGACCGAAGATATTTTA 64
|||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||
Sbjct 1 TTTCGTGCGAAATTTCAA-TTTTTT-CAATATCCTTTATTGATTGACCAAAGATATTTTA 58
Query 65 CAAGCCTTTCTCCACTAAGCCCTTCTCTCTTCTTCTCTTGGCCTCTCACTTGAATCTCCC 124
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 59 CAAGCCTTTCTCCACTAAGCCCTTCTCTCTTC-TCTCTTGGCTTCTCACTTGAATCTCCC 117
Query 125 ACAAAGCGATCAATCACAAATTCCTTCTtc-tctctctctct-TT-TCG-TCCCTAAGAA 180
|||| ||||||||||||||||||||||| ||||||||||| || ||| |||||| |||
Sbjct 118 TCAAATTGATCAATCACAAATTCCTTCTTCTTCTCTCTCTCTCTTCTCGATCCCTACGAA 177
Query 181 TCAATTATGAAAGGAGCTAAATCAAAGACTGAAACCAGGAGCTCCAAGCTCTCTGTGACC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCAATTATGAAAGGAGCTAAATCAAAGACTGAAACCAGGAGCTCCAAGCTCTCTGTGACC 237
Query 241 AAGAAGCCGGCTAAAGGAGCAGGGCGTGGCAAAGCTGCTGCTAAGGACCCCAACAAACCA 300
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 238 AAGAAGCCGGCTAAAGGAGCAGGGCGTGGCAAAGCAGCTGCTAAGGATCCAAACAAACCA 297
Query 301 AAGAGGCCAGCCAGTGCTTTCTTCGTTTTCATGGAAGATTTCCGTGAGACTTTCAAGAAG 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGAGGCCAGCCAGTGCCTTCTTCGTTTTCATGGAAGATTTCCGTGAGACTTTCAAGAAG 357
Query 361 GAAAACCCCAAGAACAAGTCTGTAGCTACTGTTGGAAAAGCTGCTGGAGACAAGTGGAAG 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 GAAAACCCCAAGAACAAGTCTGTTGCTACTGTTGGAAAAGCTGCTGGAGACAAGTGGAAA 417
Query 421 TCCTTGTCTGATTCTGAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAA 480
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 TCCTTGTCAGATTCTGAGAAAGCTCCTTATGTAGCTAAGGCTGAGAAACGCAAGGTTGAA 477
Query 481 TATGAGAAGAACATTAAAGCTTACAACAAGAAACTGGAGGAAGGTCCAAAAGAAGATGAG 540
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 478 TATGAGAAGAACATTAAAGCATACAACAAGAAACTGGAGGAAGGTCCAAAGGAAGATGAG 537
Query 541 GAATCTGACAAGTCAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAGTGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAATCTGACAAGTCAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAGTGAA 597
Query 601 GAGGAGGAGGACGATGACTAAGAAGCTGAATGTTGGTAGCATTAGTATAGATGGCTGCAA 660
||||| |||||||||| || || |||||||||||||||||||||||
Sbjct 598 GAGGA------CGATGACTAA-----TG---GT----AGCATTAGTATAGATGGCTGCAA 639
Query 661 AAATCTCTCTGTTTTTATCTT-T---ACTTGAAATGTTAACGGGGCTGATTAAAATGGGT 716
| |||||||||||||||| || | |||||||||||| | |||||||||||||| ||||
Sbjct 640 AGATCTCTCTGTTTTTATTTTATTTTACTTGAAATGTTGATGGGGCTGATTAAAA-GGGT 698
Query 717 CTTTCTTTTTATCTTTTTATATTTCCACAATCTCTCACTAAAGCCCTCTGAATGGAGAAA 776
||||||||| ||||| | || | |||||||||| |||||||||||| || |||||||||
Sbjct 699 CTTTCTTTT-ATCTTGT-AT-TG-CCACAATCTCCCACTAAAGCCCTTTGGATGGAGAAA 754
Query 777 GTGAATTGTAGAATGTTTAGATGGTGAAAGAGAGACTTGCAGCTCTGTACTCTTTGCTTT 836
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 755 GTGAATTGTAGAATGTTTAGATGGTGAAAGTGAGACTTGCAGCTCTGTACTCTTTGCTCT 814
Query 837 ATAAAACGATTTAGTTTTCTTTTCTCA 863
|||||||||||||||||||||||||||
Sbjct 815 ATAAAACGATTTAGTTTTCTTTTCTCA 841
> Ahg472304 jgi|Araly1|472304|fgenesh2_kg.1__2258__AT1G20696.3
Length=861
Score = 527 bits (285), Expect = 6e-149
Identities = 483/574 (84%), Gaps = 31/574 (5%)
Strand=Plus/Plus
Query 180 ATCAATTATGAAAGGAGCTAAATCAAAGACTGAAACCAGGAGCTCCAAGCTCTCTGTGAC 239
||| || |||||||||| |||||| |||||||||||||||||| | ||||||||||||||
Sbjct 164 ATCGATCATGAAAGGAGGTAAATCCAAGACTGAAACCAGGAGCGCAAAGCTCTCTGTGAC 223
Query 240 CAAGAAGCCGGCTAAAGGAGCAGGGCGTGGCAAAGCTGCTGCTAAGGACCCCAACAAACC 299
|||||||| || |||| | | ||||||| ||||||||| || || ||||||||
Sbjct 224 TAAGAAGCCTGC-CAAGG-G-A------GGCAAAGGTGCTGCTAAAGATCCAAACAAACC 274
Query 300 AAAGAGGCCAGCCAGTGCTTTCTTCGTTTTCATGGAAGATTTCCGTGAGACTTTCAAGAA 359
||||| || ||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 275 TAAGAGACCTTCCAGTGCCTTCTTCGTTTTCATGGAAGATTTCCGTGAGACGTACAAGAA 334
Query 360 GGAAAACCCCAAGAACAAGTCTGTAGCTACTGTTGGAAAAGCTGCTGGAGACAAGTGGAA 419
||| ||||||||||||||||||| ||| ||||||| ||||||| ||| || ||||||||
Sbjct 335 GGAGCACCCCAAGAACAAGTCTGTCGCTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAA 394
Query 420 GTCCTTGTCTGATTCTGAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGA 479
||||||||||| |||||||| ||||||||||| |||||||| || || || ||||||||
Sbjct 395 ATCCTTGTCTGACTCTGAGAAGGCTCCTTATGTGGCTAAGGCGGACAAGCGTAAGGTTGA 454
Query 480 ATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGGAGGAAGGTCCAAAAGAAGATGA 539
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 455 GTATGAGAAGAACATGAAAGCCTACAACAAGAAACTGGAGGAAGGTCCAAAGGAAGATGA 514
Query 540 GGAATCTGACAAGTCAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAGTGA 599
|||||||||||||||||| |||||||| || || || ||||||||||||||||| |||||
Sbjct 515 GGAATCTGACAAGTCAGTCTCAGAGGTGAACGATGAAGATGATGCTGAGGATGGGAGTGA 574
Query 600 AGAGG-A-GG-----AG--GACGATGACTAAGAAGCTGAATGTT--GGTAGCATTAGTAT 648
||||| | || || |||||||||||||||| |||| ||| |||||||| | |||
Sbjct 575 AGAGGTAAGGGGTTGAGAAGACGATGACTAAGAAGTTGAA-GTTATGGTAGCATAA-TAT 632
Query 649 AGATGGCTGCAAA-AATCTCTC---TGTTTTT-ATCT-TTA-CTTGAAAT-GTTAACGGG 700
||| |||||||| |||||||| ||||||| |||| || ||| |||| ||| | |
Sbjct 633 AGAAGGCTGCAAGGAATCTCTCGGATGTTTTTTATCTCTTCTCTT-AAATTGTTCATTCG 691
Query 701 GCTGATTAAAATGGGTCTTTCTTTTTATCTTTTT 734
|||| ||||| ||||||||| ||||| ||| |||
Sbjct 692 GCTGGTTAAAGTGGGTCTTTTTTTTTTTCTCTTT 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5