BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20810.1
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472316 jgi|Araly1|472316|fgenesh2_kg.1__2270__AT1G20810.1 1256 0.0
> Ahg472316 jgi|Araly1|472316|fgenesh2_kg.1__2270__AT1G20810.1
Length=890
Score = 1256 bits (680), Expect = 0.0
Identities = 829/899 (92%), Gaps = 18/899 (2%)
Strand=Plus/Plus
Query 9 CTTCTTCATCAATGGCTTCCATTAGTAGCTTACACAGATGGGCATCTAATCAACACTCTC 68
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 CTTCTTCATCAATGGCTTCCATTAGTAGCTTACACAGTTGGGCATCTAATCAACACTCTC 60
Query 69 GTCTTCCTCGAATCACTTCTATTTCTGAGGCTGACCAATCTCGACCCATTAACCAAGTCG 128
|||||||||| | | || |||||||||||||||||||||||||||||||| ||| |||
Sbjct 61 GTCTTCCTCG-A--A--TC-ATTTCTGAGGCTGACCAATCTCGACCCATTAAACAATTCG 114
Query 129 TCGCCTTTTCGGTTCCTATATCCAGAAGAGACGCGAGTATTATTCTTCTCAGCTCGATTC 188
| | |||| ||||||| ||||| ||||||||||||||||| || |||||| ||||| |||
Sbjct 115 TTGTCTTTCCGGTTCCCATATCAAGAAGAGACGCGAGTATCATCCTTCTCGGCTCGCTTC 174
Query 189 CATTGACAAGCTTCTTCGTTCTAACACCGAGCTCTTCCGAAGCTAGAGAGAGACGTAGCA 248
||||||| |||||||| |||||| | ||||||||||| ||||| ||||||||||| ||||
Sbjct 175 CATTGACGAGCTTCTTTGTTCTACCGCCGAGCTCTTCGGAAGCGAGAGAGAGACGGAGCA 234
Query 249 GAAAAGTTATCCCTCTCGAGGAATATTCCACTGGCCCTGAAGGGTTGAAATTCTATGACA 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GAAAAGTTATCCCTCTCGAGGAATATTCCACTGGCCCTGAAGGGTTGAAATTCTATGACA 294
Query 309 TTGAGGAAGGCAAAGGTCCAGTAGCAACAGAGGGATCAACTGCTCAGGTGCATTTTGATT 368
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 295 TTGAGGAAGGCAAAGGTCCAGTAGCCACAAAGGGATCAACTGCTCAGGTGCATTTCGATT 354
Query 369 GCCGTTACAGAAGCATCACTGCAATTTCTACCCGAGAATCCAAGCTTTTAGCTGGAAACC 428
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 355 GCCGTTACAGAAGCATCACTGCAATTTCTACCCGAGAATCCAAGCTTTTAGCTGGAAATC 414
Query 429 GTAGTATTGCTCAGCCTTACGAGTTCAAGGTGGGATCTACGCCAGGAAAGGAAAGGAAGC 488
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 415 GTAGTATTGCTCAGCCTTACGAGTTCAAGGTGGGATCAACGCCAGGAAAGGAAAGGAAGC 474
Query 489 GTGAATTCGTTGATAATCCAAATGGGTTATTCTCTGCACAGGCTGCACCAAAACCTCCTC 548
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 475 GTGAATTCGTTGACAATCCAAACGGGTTGTTCTCTGCACAGGCTGCACCAAAACCTCCTC 534
Query 549 CAGCAATGTATTTCATTACCGAAGGAATGAAAGTCGGAGGCAAGAGAACGGTGATTGTTC 608
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CAGCAATGTATTACATAACTGAAGGAATGAAAGTCGGAGGCAAGAGAACGGTGATTGTTC 594
Query 609 CTCCTGAAGCTGGTTATGGTCAGAAAGGAATGAATGAGATACCGCCTGGAGCTACTTTTG 668
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 595 CTCCAGAAGCTGGTTATGGTCAGAAAGGAATGAATGAGATACCGCCTGGAGCTACATTTG 654
Query 669 AGTTAAACATAGAGCTGCTTCGGGTGACTCCTCCACCAGAAGAGAAGTGAACGCTAATAA 728
||||||||||||||||||||| |||||||||||| ||||||||| ||||||| || ||||
Sbjct 655 AGTTAAACATAGAGCTGCTTCAGGTGACTCCTCCCCCAGAAGAGTAGTGAACACTGATAA 714
Query 729 GAGAAGTTTGAAGC-TTCAAGCATTGTCCCAACATTTGTGTAAAGATGACAAAGGAGAAA 787
||||| |||||||| || || ||||||| |||||| ||||||| ||||||||||||
Sbjct 715 GAGAAATTTGAAGCATTGTCCCAA-GTCCCAATATTTGTCTAAAGATAACAAAGGAGAAA 773
Query 788 AGAGAGAAAGATGTAAATTTTGGAGT--T-T-TT-AGTTTG-TGTCTGGTTGGTTATACA 841
|||||||||||||||||||||||||| | | || | |||| |||||||||| |||||||
Sbjct 774 AGAGAGAAAGATGTAAATTTTGGAGTACTGTATTTA-TTTGGTGTCTGGTTG-TTATACA 831
Query 842 CCAAACTCTGGTACAGTTAAATAACCG-GTA-TATTTGTTGGACTAAAATTTGTTAAAA 898
||||||||||||||| | ||| ||||| | | |||||| ||||| ||||||||||||||
Sbjct 832 CCAAACTCTGGTACACTGAAAGAACCGAGGAATATTTGCTGGACGAAAATTTGTTAAAA 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5