BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20823.1
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472318 jgi|Araly1|472318|fgenesh2_kg.1__2272__AT1G20823.1 1157 0.0
> Ahg472318 jgi|Araly1|472318|fgenesh2_kg.1__2272__AT1G20823.1
Length=847
Score = 1157 bits (626), Expect = 0.0
Identities = 758/820 (92%), Gaps = 16/820 (2%)
Strand=Plus/Plus
Query 1 CTCTCAAACTCAAATCAACCTTCTTCCATTTTTCAAA--TTACAAACATAC-ACAACAAC 57
|||||||||||||||||| |||||||||||||||||| ||| | ||| || ||||||||
Sbjct 1 CTCTCAAACTCAAATCAATCTTCTTCCATTTTTCAAATTTTATACACA-ACAACAACAAC 59
Query 58 AACAAAACCTCTTACTCACT-CCAATGGCTCGCCTTCTCTTTCGTCTTCTCGTAGAATCC 116
|||||||| |||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 60 AACAAAACTTCTTACTCGCTAGAAATGGCTCGCCTTCTCTTCCGTCTTCTCGTAGAATCC 119
Query 117 AACACTCCGTCTCCGGCGATTGATAACTCCACCGCCGCGTTGAATTCTGATCTCGTCGTC 176
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 AACACCCCGTCGCCGGCGATTGATAACTCCACCGCCGCGTTGAATTCCGATCTCGTCGTC 179
Query 177 ATCCTCGCTGCTCTCCTCTGCGCCTTGATTTGCGTTCTCGGCTTAATCGCCGTTTCTCGA 236
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 180 ATCCTCGCTGCTCTCCTCTGCGCCTTGATTTGTGTTCTCGGCTTGATCGCCGTTTCTCGA 239
Query 237 TGTGTCTGGCTCCGTCGTCTCGCAGCCGGAAACAGAACAGTCTCCGGATCTCAAACTCAA 296
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 240 TGCGTCTGGCTCCGTCGTTTTGCAGCCGGAAACAGAACAGTCTCCGGATCTCAAGGTCAA 299
Query 297 TCTCCTCAACCTCCGGTGGCAGCGGCGAACAAAGGCCTGAAGAAGAAAGTCCTTCAATCT 356
||||||| |||||| || ||||||||||||||||||||||||||||| || || ||||||
Sbjct 300 TCTCCTCCACCTCCAGTCGCAGCGGCGAACAAAGGCCTGAAGAAGAAGGTTCTCCAATCT 359
Query 357 CTCCCGAAGCTTACGTTCTCGCCAGAGTCACCTGAGTCGGAGAAATTCGCAGAGTGCGCG 416
|||||||| ||| | |||||||| |||||||| || |||||||||||||| ||||| |||
Sbjct 360 CTCCCGAAACTTGCCTTCTCGCCGGAGTCACCGGAATCGGAGAAATTCGCCGAGTGTGCG 419
Query 417 ATCTGTCTAGCTGAATTCTCTGCCGGCGACGAGCTCCGAGTTTTACCGCAGTGTGGTCAC 476
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATCTGTCTAGCTGAATTCTCCGCCGGCGACGAGCTCCGAGTTTTACCGCAGTGTGGTCAC 479
Query 477 GGGTTCCACGTGGCTTGCATTGACACGTGGCTAGGATCTCACTCGTCTTGCCCTTCTTGC 536
|| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 GGATTCCACGTGTCTTGCATTGACACGTGGCTAGGATCTCACTCGTCTTGTCCTTCTTGC 539
Query 537 CGTCAGATCTTGGTTGTTGCCAGGTGTCACAAGTGTGGAGGTTTACCCGGTAGCTCTAGC 596
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 CGTCAGATCTTGGTTGTTGCCAGGTGTCACAAGTGTGGCGGTTTACCCGGTAGCTCTAGC 599
Query 597 TCCGGACTTGAATCCGAACCCGAAATCGAGATCCGAATCAAGCAAGGCGAAGATGACCCC 656
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 600 TCCGGACCCGAATCCGAACCCGAAATCGAGATCCGAATCAAACAAGGCGAAGATGATCCC 659
Query 657 AACTCCTTCTTGCCATAATCATTTTAGTTTCCCATTTA-TTTATTAGAAAAC---TCT-A 711
|||||||||||||| | |||| |||| ||||||||||| ||||||||||||| | | |
Sbjct 660 AACTCCTTCTTGCCTTGATCA-TTTACTTTCCCATTTATTTTATTAGAAAACTAGTATAA 718
Query 712 --TAATTTAATGCAG---ATCATTTTAGTGGGATAGTGTTTAGTCTCTTGATGTACATGG 766
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 TTTAATTTAATGCAGATCATCATTTTAGTGGGATAGTGTTTAGTCTCTTAATGTACATGG 778
Query 767 TTTATTGTAATTTGTAAATGTTGTATGAATTGGAAAATTT 806
||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTATTGTAATTTGTAAATGTTGTATGAATTGGAAAATTT 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32213864865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5