BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G20880.1
Length=2091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472324 jgi|Araly1|472324|fgenesh2_kg.1__2278__AT1G20880.1 2429 0.0
Ahg476803 jgi|Araly1|476803|fgenesh2_kg.2__1933__AT1G76460.1 669 0.0
Ahg346489 jgi|Araly1|346489|fgenesh1_pg.C_scaffold_4002831 117 3e-25
> Ahg472324 jgi|Araly1|472324|fgenesh2_kg.1__2278__AT1G20880.1
Length=1948
Score = 2429 bits (1315), Expect = 0.0
Identities = 1784/1996 (89%), Gaps = 90/1996 (5%)
Strand=Plus/Plus
Query 138 CCAACGCTTGATTCGAATTCGTCTC-TCTCGTTTTCTGTTG--TTCTACCAATTGAGCAA 194
||||||||||||||||||||||||| || | | ||| || | || |||||||||||||
Sbjct 1 CCAACGCTTGATTCGAATTCGTCTCTTCAC-TATTC-GTCGCAATC-ACCAATTGAGCAA 57
Query 195 CCCTAGAATCATTCTTGTGTACCTACCGGAACCGAGTCTTCTCTTCTTCCGTGGCACATc 254
||||||| ||| | | |||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 58 CCCTAGACCCATAC-T-TGTACCTACCGGCACCGACTCTTCTCTTCTTCCGTGGCCCATC 115
Query 255 tttcaaag-------ttttaaacccctttt--cc-cctaacttcttttcatttttctg-t 303
|||||||| ||||||||||||||| || ||||||||||||| |||||||| |
Sbjct 116 TTTCAAAGTTTTTATTTTTAAACCCCTTTTCCCCTCCTAACTTCTTTT-TTTTTTCTGTT 174
Query 304 ttttttcccgggaaattttctctctctctctctattttttgtttctc-tcGT-CATGATC 361
||||||||||||||||||||||||||| | | | |||||| | || | | | || ||
Sbjct 175 TTTTTTCCCGGGAAATTTTCTCTCTCT-T-T-T-TTTTTTCATGATCAT-TTACTTG-TC 228
Query 362 ATTACTTGTCAAGTATGATCCTTTATTAGGTTTCTTTGGGGCCGATCTCACTTTTTCTGT 421
| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 229 A--AAATGTCAAGTATGATCCTTTATTAGGTTTCTTTGGGGCCGATCTCGCTTTTTCTGT 286
Query 422 TTCTCACCCTCTTCTCTTCGAAGGCCCTTGTAAACCCTAGAATCTCCTCTTTTCAAATT- 480
||||| || | ||||||||| || ||||||||||||||||||||| ||| |||| ||||
Sbjct 287 TTCTCTCCTTATTCTCTTCGCAGACCCTTGTAAACCCTAGAATCTACTC-TTTC-AATTC 344
Query 481 TAT-ATGTTCTGTTTCTTCATCTTCAGGTTTAATCATTCAATCTATCTCTAGGGTTTACC 539
|| |||||||| |||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 345 GATGGTGTTCTGTATCTTCATCTTCAGGTTTACTCATTCAATTTATCTCTAGGGTTTACT 404
Query 540 GGGTCAAGTCTTAGGATCTGTCTCTATCCATACTTCATCAAAGTTTCCGTCTTTGGTTCT 599
|||||||||| | | | ||||||||| |||||||||| ||||||||||||
Sbjct 405 GGGTCAAGTC--A--A--AG-----GTCCATACTTGTTCAAAGTTTCAGTCTTTGGTTCT 453
Query 600 AATC-CATGGCGTATCATTCGATTCCGAGCTCTGGGTTTCATTACTTGAATTCTCCTTTT 658
|| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 454 AA-CTCATGGCGTATCATTCGATTCCGAGCTCTGGGTTTCATTACTTGAACTCTCCTTTT 512
Query 659 GGTGACACAACCTTTACTAAAGTCTTTGTTGGTGGCCTTGCCTGGGAGACTCAAAGCGAG 718
||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 513 GGTGATACAACCTTTATTAAAGTCTTTGTGGGTGGCCTTGCCTGGGAGACTCAAAGCGAG 572
Query 719 ACTCTTCGTCGGCATTTCGATCAATATGGTGATATCCTTGAGGCTGTCGTTATTACTGAT 778
|||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||
Sbjct 573 ACTCTTCGTCGGCATTTCGAACAATATGGTGATATCCTTGAGGCGGTTGTGATTACTGAT 632
Query 779 AAGAACACTGGTCGATCCAAAGGTTATGGCTTTGTGACTTTCCGAGATCCAGAGGCTGCT 838
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 633 AAGAACACCGGTCGATCCAAAGGTTACGGCTTTGTGACTTTCCGAGATCCAGAGGCTGCT 692
Query 839 AGGAGAGCCTGTGTCGATCCAACACCTATTATAGATGGCAGACGAGCGAATTGTAATCTC 898
|||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 693 AGGAGAGCATGTGTCGACCCAGCACCTATTATAGATGGCAGACGAGCGAATTGTAATCTC 752
Query 899 GCTTCTCTTGGGAGATCTAGGCCTCCAATGCAATATGCAGTGATACCCCATGCTCCTGGA 958
|||||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 753 GCTTCTCTTGGGAGGCCTCGGCTTCCAATGCAATATGCAGTGATACCCCATGTTCCTGGA 812
Query 959 CGGGTAAGACCTCCTTCCCCATATGTTGGAAGTGTGCAGAGTCCTCGCGGTTTGCA-T-T 1016
||| |||||||| |||||||||||||||||||||||||||||||||||| || || | |
Sbjct 813 CGGATAAGACCTGTTTCCCCATATGTTGGAAGTGTGCAGAGTCCTCGCGG-TT-CACTCT 870
Query 1017 TTGGAAGCCATCCGTATCACCAACCCCCTACTTATAACTACCAACAAGGAGTGGTGTACC 1076
||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 871 TTGGAAGCCATCCGTATCACCAACCACCTGCTTATAACTACCAACAAGGAATGGTGTACC 930
Query 1077 CTTATGGGGTTACACCATATGGACCTGACTACATGTACTCACAGTCTCAGGGTTTCTATG 1136
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 931 CTTATGGGGTTACACCATATGGACCTGACTACATGTACTCACAGTCTCAAGGCTTCTATG 990
Query 1137 GTCCTTACATGGGTCAACAGTACCTTCAGGTTTATGGAGTACCTGGGGCAGTTAACTCAC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 GTCCTTACATGGGTCAACAGTACCTTCAGGTTTATGGAGTACCTGGGGCAGTTAACTCAC 1050
Query 1197 CGGGTTATCAATATGGGCAAC-TGAGCCATACTATTCCTGGTGCTCACGGTTATACAGCG 1255
|||||||||||||||||||| | || || ||||||||||||| |||||||||||||||
Sbjct 1051 CGGGTTATCAATATGGGCAATAT-AGTCAGACTATTCCTGGTGGTCACGGTTATACAGCA 1109
Query 1256 GGTCAAGGTTATTCACATCCAGGAAGTCATGTTCTACAGCTTGGTGCCACTTCACCTATG 1315
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1110 GTTCAAGGTTATTCACATCCAGGAAGTCATGTTCTACAGCTTGGTGCAACTTCACCTATG 1169
Query 1316 TCTGCTATTCAATCTCCATACCCTTCTCCTTC-AGCTCCAACGCACCAACGTGTCATCGT 1374
||||||||||||||||||||||||| |||| | |||||||||| |||||| |||| ||
Sbjct 1170 GCTGCTATTCAATCTCCATACCCTTCGGCTTCTA-CTCCAACGCAGCAACGTATCATTGT 1228
Query 1375 CCAGACTCCTCCTCAGTATATACAGAGTAGCGGTTCTGATCAGACAACAGGGTGA----T 1430
||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| |
Sbjct 1229 CCAGACTCCTCCTCAGTATATGCAGAGTAGCAGTTCTGATCAAACAACAGGGTGAAAAAT 1288
Query 1431 ----CAACTTAGTAATCCTTAAAGATTGCAGAAAAGGGAAGAAGTCCAGGACAAATGCTA 1486
||||||| |||||||| |||| ||||||||||||| | | | | |||||
Sbjct 1289 GGATCAACTTATTAATCCTTGAAGACTGCAGAAAAGGGA------C-A--A-A--TGCTA 1336
Query 1487 CTCTGGCAGGCTTCCTGTTTAAGCTTAGCACATTATTTAT-TTTCGCATTCTAGAGGTAT 1545
||| |||||| ||||||||||| ||| ||||||||||| | ||| |||||||||||||||
Sbjct 1337 CTCGGGCAGGATTCCTGTTTAAACTTTGCACATTATTTTTATTT-GCATTCTAGAGGTAT 1395
Query 1546 TAAGTAGTCTTGCTCACTGAAGAAGTCAAAAAAGGGGGAAAGGAGAATGGAAGTTTCAGG 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 TAAGTAGTCTTGCTCACTGAAGAAGTCAAAAAAGGGGGAAAGGAGAATGGAAGTTTCAGG 1455
Query 1606 -GTTTGTGCTTCTGTTATCTTTAACCCTCTCATCCTATGTATATAGCCCACAACAAGCTT 1664
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1456 TGTTTGTGCTTCTGTTATCTTTAACCCTCTCATCATATGTATATAGCCCACAACAAGCTT 1515
Query 1665 GATGGCATAAACTATATGAATAGTTTCACCCCGGAAACAAGGGTTTTCGCGGTAAACTGG 1724
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct 1516 GATGGCATTAACTATATGAATGGTTTCACCCCGGAAACAAGAGTTTTCGCGGTAAACCGG 1575
Query 1725 TAGGAATAAGTTTGGTGTACAAAGAAAGTTCATATATATATAAACACATACATAAATGCA 1784
||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||
Sbjct 1576 TAGGAATAAGTTTGGTGTACAAAGAAAGTGAATATATAAATAAACACATACAGA--TGCA 1633
Query 1785 TATAGAATGGTGGAATCAACATCTGATTCTTTTGGGTGGTAAAAGTAGTCTTCTTACTAC 1844
||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||
Sbjct 1634 TATAGAATGGTGGAATCAAAATCTGATTCTTTTATGTGGTTAAATTAGTCTTCTTACTAC 1693
Query 1845 ACACTCTCTTAAGGCATATGAGTGTTGGTAATATTACTAGGTAGA-TTCTCACGTCCTCT 1903
||||| ||| ||||| || |||||||||||| |||| |||||||| || | | |||||||
Sbjct 1694 ACACTTTCTCAAGGCGTAGGAGTGTTGGTAAGATTATTAGGTAGACTTTT-ATGTCCTCT 1752
Query 1904 TGAGTCAAGTCCTCTGCATTGTAAGTAAAAAATTAATGACTATGGAGCTCACTTCAGCTT 1963
|||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1753 CAAGTCGAGTCCTCTGCATTGTAAGTAAAAAATTAATGACTATGGAGTTCACTTTAGCTT 1812
Query 1964 CTTTGTCTGTGCATAAATTTTAGCTCCAGGATTCTTCTCTTTTCTATGTCTGTACAGTTT 2023
||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1813 CTTTGTCTGTGGATATATTTTAGCTCCAGGATTCTTATCTTTTCTCTGTCTGTACAGTTT 1872
Query 2024 CTA-------GACTGATAAATTGTTCTTCTCAATTGTTT-CTGTCTATGACTCCTATCTT 2075
||| |||| ||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1873 CTACTTTTTAGACTCATAAATTGTTCTTCTTAATTGTTTTCTGTCTATGACTCCCATCTT 1932
Query 2076 CTACTCTGATTCCTCT 2091
|| |||||||||||||
Sbjct 1933 CTGCTCTGATTCCTCT 1948
> Ahg476803 jgi|Araly1|476803|fgenesh2_kg.2__1933__AT1G76460.1
Length=2076
Score = 669 bits (362), Expect = 0.0
Identities = 597/710 (84%), Gaps = 17/710 (2%)
Strand=Plus/Plus
Query 600 AATCCATGGCGTATCATTC-GATTCCGAGCTCTGGGTTTCATTACTTGAATTCTCCTTTT 658
||| |||||||||||| || | ||||| | ||||||||||| ||||||||||||||||||
Sbjct 573 AAT-CATGGCGTATCAGTCTG-TTCCGGGTTCTGGGTTTCACTACTTGAATTCTCCTTTT 630
Query 659 GGTGACACAACCTTT-ACTAAA-GTCTTTGTTGGTGGCCTTGCCTGGGAGACTCAAAGCG 716
||||| |||| |||| || ||| || || || ||||||||||| |||||||||||||| |
Sbjct 631 GGTGATACAA-CTTTCAC-AAAGGTATTCGTCGGTGGCCTTGCTTGGGAGACTCAAAGTG 688
Query 717 AGACTCTTCGTCGGCATTTCGATCAATAT-GGTGATATCCTTGAGGCTGTCGTTATTACT 775
| || ||||||||||||||||| || | | ||||| |||||||| ||||| || ||| ||
Sbjct 689 AAACCCTTCGTCGGCATTTCGAACAGT-TCGGTGAAATCCTTGAAGCTGTTGTCATTGCT 747
Query 776 GATAAGAACACTGGTCGATCCAAAGGTTATGGCTTTGTGACTTTCCGAGATCCAGAGGCT 835
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 748 GATAAGAACACTGGCCGATCCAAAGGTTATGGCTTTGTGACTTTCCGAGATCCAGAAGCT 807
Query 836 GCTAGGAGAGCCTGTG-TCGATCCAACACCTATTATAGATGGCAGACGAGCGAATTGTAA 894
||||||||||| |||| | || ||||| || |||||||| || ||||| || || |||||
Sbjct 808 GCTAGGAGAGCTTGTGCT-GACCCAACTCCGATTATAGACGGTAGACGTGCAAACTGTAA 866
Query 895 TCTCGCTTCTCTTGGGAGATCTAGGCCTCCAATGCAATATGCAGTGATACCCCATGCT-C 953
||| ||||| ||||||||| || |||||||| ||| |||||| ||||||| || | |
Sbjct 867 TCTTGCTTCCCTTGGGAGACCTCGGCCTCCATTGCCCTATGCATTGATACCTAATA-TGC 925
Query 954 CTGGACGGGTAAGACCTCCTTCCCCATATGTTGGAAGTGTGCAGAGTCCTCGCGGTTTGC 1013
||||||| |||||||| ||||||| || |||||| ||||||| ||||||| |||| |
Sbjct 926 CTGGACGCTTAAGACCTGCTTCCCCGTACATTGGAAATGTGCAGGGTCCTCGTGGTTCAC 985
Query 1014 ATT-TTGGAAGCCATCCGTATCACCAACCCCCTACTTATAACTACCAACAAGGAGTGGTG 1072
|| |||||| |||||||||| ||||| | | | ||||||||||| |||||||| ||
Sbjct 986 -TTATTGGAAATTATCCGTATCAGCAACCACTTCCATATAACTACCAGCAAGGAGTTGTC 1044
Query 1073 TACCCTTATGGGGTTACACCATATGGACCTGACTACATGTACTCACAGTCTCAGGGTTTC 1132
|| ||||||||||| || || |||||||| || |||||||||||||| || ||||||||
Sbjct 1045 TATCCTTATGGGGTAACCCCTTATGGACCCGAGTACATGTACTCACAATCACAGGGTTTA 1104
Query 1133 TATGGTCCTTACATGGGTCAACAGTACCTTCAGGTTTATGGAGTACCTGGGGCAGTTAAC 1192
|||||||| ||||||||||| |||||||||||||| || ||||||||||| ||||| ||
Sbjct 1105 TATGGTCCATACATGGGTCAGCAGTACCTTCAGGTCTACGGAGTACCTGGAGCAGTGAAT 1164
Query 1193 TCACCGGGTTATCAATATGGGCAACTGAGCCATACTATTCCTGGTG-CTCACGGTTATAC 1251
||||| ||||||||| |||||||| || || ||||||||| ||| | || |||||| |
Sbjct 1165 TCACCCATTTATCAATACGGGCAACTAAGTCAGACTATTCCTAGTGGC-CATGGTTATCC 1223
Query 1252 AGCGGGTCAAGGTTATTCACATCCAGGAAGTCATGTTCTACAGCTTGGTG 1301
||| | |||||| |||||| ||||||||| |||||||| ||||||||||
Sbjct 1224 AGCAGTTCAAGGGTATTCAGTTCCAGGAAGCCATGTTCTGCAGCTTGGTG 1273
> Ahg346489 jgi|Araly1|346489|fgenesh1_pg.C_scaffold_4002831
Length=1005
Score = 117 bits (63), Expect = 3e-25
Identities = 135/169 (80%), Gaps = 8/169 (5%)
Strand=Plus/Plus
Query 745 TGGTGATATCCTTGAGGCTGTCGTTATTACTGATAAGAACACTGGTCGATCCAAAGGTTA 804
|||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 138 TGGTGATATCGTTGAAGCTGTCGTTATTACTGATAAGAACACTGGAAGATCCAAAGGATA 197
Query 805 TGGCTTTGTGAC-TTTCCGAGATCCAGAGGCTGCTAGGAGAGCCTGTGTC-GA-TCC-AA 860
||| |||||||| ||| | || | || || || | |||||| | |||| || | ||
Sbjct 198 TGGATTTGTGACGTTTAAG-GAAGCTGAAGCAGCGATGAGAGC-T-TGTCAGAATATGAA 254
Query 861 CACCTATTATAGATGGCAGACGAGCGAATTGTAATCTCGCTTCTCTTGG 909
||| | || ||||| ||| |||| ||||| |||||||||| ||||||
Sbjct 255 T-CCTGTGATTGATGGAAGAAGAGCTAATTGCAATCTCGCTTGTCTTGG 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78656355925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5