BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21000.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921070 jgi|Araly1|921070|scaffold_102351.1 1408 0.0
> Ahg921070 jgi|Araly1|921070|scaffold_102351.1
Length=840
Score = 1408 bits (762), Expect = 0.0
Identities = 814/840 (97%), Gaps = 0/840 (0%)
Strand=Plus/Plus
Query 113 GGAGCTCGCAAATCTGGCTATCGAAAACCACAATCACAAACTCAACTTCGGGGCCTTCAA 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGCTCGCAAATCTGGCTATCGAAAACCACAATCACAAACTCAACTTCGGGGCCTTCAA 60
Query 173 GGCCAATCACAAGAAAGTCATGGGACCAATGATAAGAACAGAGGAAGAAGAAGACTATAC 232
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GGCCAATCACAAGAAAGTCATGGGACCAATGATAAGAACAGAGGAAGAAGGAGACTATAC 120
Query 233 AAGTCCACCGTGGCTAATGCCAATGCTACGAGGGAGTTACTTCGTCCCTTGTTCCATCCA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 GAGTCCACCGTGGCTAATGCCAATGCTACGAGGGAGTTACTTCGTCCCTTGTTCGATCCA 180
Query 293 TGTCGATTCAAACAAAAACGAATGCAATTTGTTCTGTCTTGATTGTGCTGGAAATGCCTT 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTCGATTCAAACAAAAACGAATGCAATTTGTTCTGTCTTGATTGTGCTGGAAATGCCTT 240
Query 353 TTGCTCTTACTGTTTAGTCAAACATAAAGACCATCGTGTTGTTCAGATACGAAGATCTTC 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGCTCTTACTGTTTAGTCAAACATAAAGACCATCGTGTTGTTCAGATACGAAGATCTTC 300
Query 413 GTACCATAACGTTGTGAGAGTGAATGAGATACAGAAGTTCATAGACATCGCTTGTGTTCA 472
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 301 GTACCATAACGTGGTGAGAGTGAATGAGATACAGAAGTTCATAGACATCTCTTGCGTTCA 360
Query 473 GACATATATTATCAACAGCGCAAAGATCGTGTTCCTCAATGAAAGACCTCAGCCTAGAAT 532
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GACATATATCATCAACAGCGCAAAGATCGTGTTCCTCAATGAAAGACCTCAGCCTAGAAT 420
Query 533 CGGTAAAGGTGTTACAAACACTTGTGAAATCTGTTGCAGAAGTCTCCTTGATTCTTTCAG 592
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 CGGCAAAGGTGTTACAAACACTTGTGAAATCTGTTGCAGAAGCCTCCTTGATTCTTTCAG 480
Query 593 GTTCTGCTCTCTCGGCTGCAAGCTTGGAGGAATGAGGAGAGGAGATTTATCTCTAACCTT 652
||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 481 GTTCTGCTCTCTCGGCTGCAAGCTTGGAGGAATGAAGAGAGGAGATTCATCTTTAACCTT 540
Query 653 CTCTTTGAAAGGAAAGCATGGGAGAGAGTACCTTGGTGGGTCGGAATCAGATGAAGCTAC 712
|||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 541 CTCTTTGAAAGGGAAGCATGGTAGAGAGTACCAAGGTGGGTCGGAATCAGATGAAGCCAC 600
Query 713 TACACCGACTAAGATGCGTAAGACCAATGCTTTCAACCGTCTGATGAGTGGTCTCTCGAT 772
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TACACCAACTAAGATGCGTAAGACCAATGCTTTCAACCGTCTGATGAGTGGTCTCTCGAT 660
Query 773 CTCAACCGTTAGATTCGATGACTACGGTCCCAATGGTGATCAAAGGTCTTCAAGCTCTGG 832
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 CTCAACCGTTAGATTCGATGACTACGGTCCTGGTGGTGATCAAAGGTCTTCAAGCTCTGG 720
Query 833 TGATGAAGGTGGTTTTAGTTTCTCTCCGGGAACACCTCCGATCTATAATCACCGGAATTC 892
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 721 TGATGAAGGTGGTTTTAGTTTCTCTCCGGGAACATCTCCGATCTACAATCACCGGAATTC 780
Query 893 AAGCAGACGAAAGGGTGTCCCTCACCGTGCTCCGTTCTAAGAAAAGATAATTACTAAATT 952
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 781 AAGCAGACGAAAGGGTGTCCCTCACCGTGCTCCGTTTTAAGAAAAGATAATTACTGAATT 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5