BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21050.1 Length=904 Score E Sequences producing significant alignments: (Bits) Value Ahg921072 jgi|Araly1|921072|scaffold_102353.1 1118 0.0 > Ahg921072 jgi|Araly1|921072|scaffold_102353.1 Length=776 Score = 1118 bits (605), Expect = 0.0 Identities = 712/763 (93%), Gaps = 9/763 (1%) Strand=Plus/Plus Query 76 AAACAAATCATGAGGACAATGGTTGATTTAGGAAAGCAAAGAGATCATAACTATCACCAC 135 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 13 AAAAAAATCATGAGGACAATGGTTGATTTAGGAAAGCAAAGAGATCATCACTATCAACAC 72 Query 136 ATGCAAATCATAACCACTCCTACCTCCGTGGATTGTTCTCGCGAATTCCGTCACCGACGA 195 |||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||||| Sbjct 73 ATGCAATTCATAACCACTCCGACCACCGTCGATTGTTCTCGCGAATTCCGTCACCGACGA 132 Query 196 ACACTTCGTTCACTCATCGAATGCATGATTCCATACTGTTGCACTTACCAACAACAACCA 255 ||||| || |||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 133 ACACTCCGATCACTCATCGAATGCATGATCCCATACTGTTGCACTTACCAACAACAGCCT 192 Query 256 TACCAAAACGACACCCTTTCAGTCTCTTCCACTTCATCCTCGTCTTCATCCTCAGACCAC 315 |||||||||||||| |||||||||||| | | || | || ||||| |||||||||||| Sbjct 193 TACCAAAACGACACTGTTTCAGTCTCTT-C-C-TC-T--TCCTCTTCCTCCTCAGACCAC 246 Query 316 TC-T--TCCTCCTCCCAGAGTAGCAGTACCGTAAGTGGAACTTTCTTCGGACACCGTCGT 372 || | |||||||||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct 247 TCTTCCTCCTCCTCCCAGAGTAACAGCATCGTAAGTGGAACTTTCTTCGGCCACCGTCGT 306 Query 373 GGCCGAGTCAGCTTCTGCCTTCAAGACGCCGCCGTGGGATCTTCACCGCTGCTCCTCCTC 432 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 307 GGCAGAGTCAGCTTCTGCCTTCAAGACGCCGCCGTGGGATCTTCACCGCTTCTCCTCCTT 366 Query 433 GAGCTAGCTGTTCCTACGGCAGCTTTAGCCAAAGAAATGGACGAGGAAGGTGTTCTACGC 492 |||||||||||||| ||||| || |||||||| ||||||||||||| ||||||||||||| Sbjct 367 GAGCTAGCTGTTCCCACGGCTGCGTTAGCCAAGGAAATGGACGAGGCAGGTGTTCTACGC 426 Query 493 ATAGCCCTCGAGTGTGACCGTCGTAGAAGCAGCAATAGTCGTTCGTCTTCGATCTTTGAT 552 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 427 ATAGCCCTAGAGTGTGACCGTCGTAGAAGCAGCAACAGTCGTTCGTCGTCGATCTTTGAT 486 Query 553 GTTCCTGTTTGGTCTATGTTTTGTAACGGAAGGAAAATGGGATTTGCCGTGAGGAGAAAG 612 |||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 487 GTTCCTGTGTGGTCGATGTATTGCAACGGAAGGAAAATGGGATTTGCCGTGAGGAGAAAG 546 Query 613 GTGACGGAGAACGACGCCGTTTTCTTGAGGATGATGCAGTCTGTGTCAGTCGGAGCCGGA 672 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 547 GTGACGGAGAACGACGCCGTTTTCTTAAGGATGATGCAGTCTGTGTCAGTCGGAGCCGGA 606 Query 673 GTGGTGCCGTCGGAAGAGGAGGATCAGATGTTGTATTTGAGGGCTAGGTTTGAGCGAGTT 732 || |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 607 GTTGTGCCGTCGGAAGAGGAGGAGCAGACGTTGTATTTGAGGGCTAGGTTTGAGCGAGTT 666 Query 733 ACTGGTTCGAGTGACTCGGAATCGTTTCACATGATGAATCCGGGTGGTAGTTATGGACAA 792 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 667 ACTGGGTCGAGTGACTCGGAATCGTTTCATATGATGAATCCGGGTGGTAGTTATGGACAA 726 Query 793 GAGCTTAGTATATTTCTTTTGCGATCGTGAAATTAAGTACGGT 835 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 727 GAGCTTAGTATATTTCTTTTGAGATCGTGAAATTAAGTACGGT 769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33510044043 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5