BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21065.1 Length=799 Score E Sequences producing significant alignments: (Bits) Value Ahg472344 jgi|Araly1|472344|fgenesh2_kg.1__2298__AT1G21065.1 1219 0.0 Ahg915974 jgi|Araly1|915974|Al_scaffold_0008_725 350 1e-95 Ahg900483 jgi|Araly1|900483|Al_scaffold_0004_1133 350 1e-95 Ahg896591 jgi|Araly1|896591|Al_scaffold_0005_557 339 3e-92 Ahg888092 jgi|Araly1|888092|Al_scaffold_0007_78 239 3e-62 Ahg891588 jgi|Araly1|891588|Al_scaffold_0007_3574 161 6e-39 > Ahg472344 jgi|Araly1|472344|fgenesh2_kg.1__2298__AT1G21065.1 Length=803 Score = 1219 bits (660), Expect = 0.0 Identities = 760/806 (94%), Gaps = 15/806 (2%) Strand=Plus/Plus Query 1 ATGGTGATGATGGTGAAAGTGAAAGGCCTTAttgggaggttttggtttggagttggaggt 60 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 1 ATGGTGATGATGGTGAAAGTGAAAGGCCCTATTGGGAGATTTTGGTTTGGAGTTGGAGGA 60 Query 61 gggattgtgttggccattgttgttgttattattggGCTTAGAGGAACACAAAAAGCTAT- 119 || ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 GGAATTTTGTTGGCCATTGTTGTTGTTATTATTGGGCTTAGAGGAACACTAAAAGCTATG 120 Query 120 --GAGCTCGACGTTCTTGTTCTCTGGTGTTGTTCCTCTGCGTGTGAGATCGGTTTTGACT 177 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAGAGCTCGACGATCTTGTTCTCTGGTGTTGTTCCTCTGCGTGTGAGATCGGTTTTGACT 180 Query 178 CCAGCTAATCCGGCTACCGATAGAGCTTCAATGGCGAGTTCCTCTGGTGCTAAGTGGGCT 237 ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 181 CCAGCGAATCCAGCTACCGATCGAGCTTCAATGGCGAGTTCCTCTGGTCCTAAGTGGGCT 240 Query 238 CAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGATA 297 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CAGAAAACCATCACACTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGATA 300 Query 298 TTGAAAGAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTT 356 |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTGAAGGAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTT 359 Query 357 ACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGA 416 |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 360 GCAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGA 419 Query 417 TACTGAGACTTTCTTGAACAGGATTGTTCCTGAGGGGAATTCAGCGCCTTGGAGGCATAC 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TACTGAGACTTTCTTGAACAGGATTGTTCCTGAGGGGAATTCAGCGCCTTGGAGGCATAC 479 Query 477 TATGGAAGGTCCTGATGACATGCCAGCTCATATCAAGTCATCAATGTTTGGATGTCAACT 536 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 480 CATGGAAGGTCCTGATGACATGCCAGCTCATATCAAATCATCAATGTTTGGATGTCAACT 539 Query 537 CACAATCCCAATAACAAAAGGAAAACTCAGCATGGGAACTTGGCAGGGAATATGGCTCTG 596 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 540 CACAATCCCAATAACAAAAGGCAAACTCAACATGGGAACTTGGCAGGGAATATGGCTCTG 599 Query 597 TGAACACCGTGATGCTCCAACAGCACGCAGAGTTGTGGTCACTCTCAATGGAATCTAGAG 656 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 600 TGAACACCGTGATGCTCCAACCGCACGCAGAGTTGTGGTCACTCTCAATGGAATCTAGAT 659 Query 657 ATGTCTCTTCACGTTAGATGGCTTGTAACCTCGTAATGTTTTAATAGATTTTTACAGTCT 716 |||| |||||| ||||||| |||||||||||||| | |||||||||||||| ||||||| Sbjct 660 ATGTTTCTTCATGTTAGATTGCTTGTAACCTCGTGGT-TTTTAATAGATTTT-ACAGTCT 717 Query 717 TGTAATGAAATTTGACTTTCTATATGA-A-A---C--C-ACTTTGTCCACATTTTGGTGT 768 ||||||||||||||||||||||||||| | | | | |||||||||||||| |||||| Sbjct 718 TGTAATGAAATTTGACTTTCTATATGAGACAATGCTGCCACTTTGTCCACATTGTGGTGT 777 Query 769 TTATTGCATCAGAAAAATCCATATTT 794 |||||||||||||||||| ||||||| Sbjct 778 TTATTGCATCAGAAAAATTCATATTT 803 > Ahg915974 jgi|Araly1|915974|Al_scaffold_0008_725 Length=216 Score = 350 bits (189), Expect = 1e-95 Identities = 208/217 (96%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 235 GCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG 294 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCTCAGAAAACCATCACACTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG 60 Query 295 ATATTGAAAGAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 353 ||| |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATAGTGAAGGAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 119 Query 354 CTTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 413 ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 120 CTTGCAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 179 Query 414 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 450 ||||||||||||||||||||||||||||||||||||| Sbjct 180 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 216 > Ahg900483 jgi|Araly1|900483|Al_scaffold_0004_1133 Length=216 Score = 350 bits (189), Expect = 1e-95 Identities = 208/217 (96%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 235 GCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG 294 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCTCAGAAAACCATCACACTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG 60 Query 295 ATATTGAAAGAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 353 ||| |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATAGTGAAGGAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 119 Query 354 CTTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 413 ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 120 CTTGCAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 179 Query 414 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 450 ||||||||||||||||||||||||||||||||||||| Sbjct 180 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 216 > Ahg896591 jgi|Araly1|896591|Al_scaffold_0005_557 Length=216 Score = 339 bits (183), Expect = 3e-92 Identities = 206/217 (95%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 235 GCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAG 294 ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| Sbjct 1 GCTCAGAAAACCATCACACTTCCACGGCCACGTCGTGGATGTCATCTTATTACTCCAAAG 60 Query 295 ATATTGAAAGAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 353 ||| |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATAGTGAAGGAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTT 119 Query 354 CTTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 413 ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 120 CTTGCAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGC 179 Query 414 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 450 ||||||||||||||||||||||||||||||||||||| Sbjct 180 TGATACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 216 > Ahg888092 jgi|Araly1|888092|Al_scaffold_0007_78 Length=330 Score = 239 bits (129), Expect = 3e-62 Identities = 142/148 (96%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 304 GAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTTACAACA 362 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 106 GAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTTGCAACA 164 Query 363 CACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGATACTGA 422 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 CACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGATACTGA 224 Query 423 GACTTTCTTGAACAGGATTGTTCCTGAG 450 |||||||||||||||||||||||||||| Sbjct 225 GACTTTCTTGAACAGGATTGTTCCTGAG 252 > Ahg891588 jgi|Araly1|891588|Al_scaffold_0007_3574 Length=255 Score = 161 bits (87), Expect = 6e-39 Identities = 91/93 (98%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 358 CAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGAT 417 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 88 CAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGAT 147 Query 418 ACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 450 ||||||||||||||||||||||||||||||||| Sbjct 148 ACTGAGACTTTCTTGAACAGGATTGTTCCTGAG 180 Score = 99.0 bits (53), Expect = 5e-20 Identities = 59/62 (95%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 233 GGGCTCAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAA 292 |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 24 GGGCTCAGAAAACCTTCACACTTCCGCCGCTACGTCGTGGATGTCATCTTATTACTCCAA 83 Query 293 AG 294 || Sbjct 84 AG 85 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29507137758 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5