BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21080.3 Length=1873 Score E Sequences producing significant alignments: (Bits) Value Ahg472346 jgi|Araly1|472346|fgenesh2_kg.1__2300__AT1G21080.1 1901 0.0 Ahg476830 jgi|Araly1|476830|fgenesh2_kg.2__1960__AT1G76700.1 1099 0.0 > Ahg472346 jgi|Araly1|472346|fgenesh2_kg.1__2300__AT1G21080.1 Length=1523 Score = 1901 bits (1029), Expect = 0.0 Identities = 1190/1260 (94%), Gaps = 41/1260 (3%) Strand=Plus/Plus Query 200 agGAGCGGTTGAGTTGAAATTTGCTGGCGCGTACTCGTCAACGTAACGCGCGTGGAGTGT 259 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1 AGGAGCGGTTGAGTTGAAATTGGCTGGCGCGTACTCGTCAACG--ACGCGCGTGGAGTGT 58 Query 260 TTTCGTGtccctcctcctcctcctcctcctcACTAAGACAAATATTTTGAGGT-TCTCTT 318 ||||||| ||||||||||||||||| ||||||| ||||| | |||| Sbjct 59 TTTCGTG----------TCCTCCTCCTCCTCACTTAGACAAAGATTTT---CTATCTC-G 104 Query 319 TCTCGTTTGTGTGATCTGTCTGACAAGCTAGAAGAATCGTAGATCGTGATCGGATTGATT 378 | |||||||||||||||| | | | | |||||||||||||||||||| Sbjct 105 T-TCGTTTGTGTGATCTG--T------C-----G----G-AGATCGTGATCGGATTGATT 145 Query 379 TGATAATTATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCCCCACCGCTA 438 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 146 TGAT-A--ATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCCCCACCGCTA 202 Query 439 CGGAGGCTGAGATTAAGAAAGCTTATTACATCAAGGCACGCCAAGTGCATCCAGATAAAA 498 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 203 CGGAGGCTGAGATTAAGAAGGCTTATTACATCAAGGCACGCCAAGTACATCCAGATAAAA 262 Query 499 ACCCTAATGATCCTCAGGCTGCTCATAATTTCCAGGTATTGGGAGAGGCCTACCAAGTGC 558 |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 263 ACCCTAATGATCCTCAAGCTGCTCATAATTTCCAGGTGTTGGGAGAGGCCTACCAAGTGT 322 Query 559 TAAGTGATCCAGGGCAACGTCAGGCCTATGACACATCTGGGAAGTCAGGGATTTCAACTG 618 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 323 TAAGTGATCCAGGGCAACGTCAGGCCTATGACACATGTGGGAAGTCAGGGATTTCAACTG 382 Query 619 AGATCATTGATCCTGCGGCTATATTTGCTATGCTTTTTGGGAGTGAACTCTTTGAAGAAT 678 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 383 AGATCATTGATCCCGCGGCTATATTTGCTATGCTTTTTGGGAGTGAACTTTTTGAAGAAT 442 Query 679 ACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCACTGAAGGGGATC 738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 443 ACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCACTGAAGGGGATC 502 Query 739 AGATTGATACTAAAAAGATTATAGAAAAAATGAGGGCTGTTCAGAAAGAAAGAGAAGACA 798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 AGATTGATACTAAAAAGATTATAGAAAAAATGAGGGCTGTTCAGAAAGAAAGAGAAGACA 562 Query 799 AACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAACAAAGATGAATTTA 858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 563 AACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAACAAAGATGAATTTA 622 Query 859 CTAGCAATGCTGAAGCTGAAGTAACAAGACTCTCAAATGCAGCATACGGGGTGGAAATGT 918 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 623 TTAGCAATGGTGAAGCTGAAGTAACAAGACTCTCAAATGCAGCATACGGGGTGGAAATGT 682 Query 919 TGAACACAATCGGATATATATATGTCAGACAAGCGGCAAAAGAGCTTGGGAAGAAAGCTA 978 |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 683 TGAACACAATTGGATATATATATGTAAGACAAGCGGCGAAAGAGCTTGGGAAGAAAGCTA 742 Query 979 TTTATCTCGGTGTGCCATTCGTAGCTGAATGGTTTAGGACGAAAGGTCACTTCATCAAAT 1038 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 743 TTTATCTCGGTGTACCATTCGTAGCTGAATGGTTTAGGACGAAAGGTCACTTCATCAAAT 802 Query 1039 CCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTGCAAGAGGAAATGAAAA 1098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 803 CCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTGCAAGAGGAAATGAAAA 862 Query 1099 GGCAACTAAGTGCTGAAGGCAATTATACCGAGAAGGAACTTGAAGAGTACATGAAGACCC 1158 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 863 GGCAGCTAAGTGTTGAAGGCAATTATACCGAGAAGGAACTTGAAGAGTACATGAAGACCC 922 Query 1159 ATAAGAAAGTAATGATTGATTCTCTGTGGAAGCTCAATGTTGCTGATATCGAAAGCACTA 1218 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 923 ATAAGAAAGTGATGATTGATTCTCTGTGGAAGCTCAATGTTGCTGATATCGAGAGCACTA 982 Query 1219 TCTCCCGTGTTTGTGAGCAGGTACTTCAAGATCCCACTGCCAAGAGAGAGGAGCTTCGTG 1278 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 983 TCTCCCGTGTTTGTGAGCTGGTACTTCAAGATCCCACTGCCAAGAAAGAGGAGCTTCGTG 1042 Query 1279 CAAGGGCCAAGGGGTTAAAAACTCT-GGGAAAGATCTTCCAGAAGAACAAGATAGCCAGT 1337 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1043 CAAGGGCCAAGGGGTTAAAAACTCTAGGGAA-GATCTTCCAGAAGAACAAGATAGCCAGT 1101 Query 1338 GAGAGTGATCCTTTAGTAAGAGCCGAACTTCACAAACTAAACGGAAATGGTCAAGAACAT 1397 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1102 GAGAGTGATCCTTTAGTAAGAGCCGAACTTCACAAACTAAACGGACATGGTCAAGAACAT 1161 Query 1398 GATCATTCATCCACATCACCAAAATCTGATGAAGCATCTCGCTCTACCGTTGGACCTCAG 1457 |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1162 GATCATGCATCCACATCACCAAAATCTGATGAAGCATCTCGCTCTACATTTGGACCTCAG 1221 Score = 377 bits (204), Expect = 1e-103 Identities = 288/324 (89%), Gaps = 23/324 (7%) Strand=Plus/Plus Query 1485 GAACCGCAAAGCCCTTATGTGGAAGCACCGAAACTTGGAGAAGAGCAAATCAACTATTAC 1544 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||| Sbjct 1222 GAACCGCAAAGCCCTTATGTGGAAACACCGAAACTTGGAGAAGAGCAATTCAACCAATAC 1281 Query 1545 TTCCCAAGGCCTGCGCCGCCTCCAGGAGCACAGAGACACTCTTAAACTGGCAATGGATTG 1604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1282 TTCCCAAGGCCTGCGCCGCCTCCAGGAGCACAGAGACACTCTTAAACTGGCAATGGATTG 1341 Query 1605 ATTCACAGATGAACGAAAAGGTTAttttttcctttttttGCTATATAATATAAGTCTTTA 1664 | | | | | |||||| |||| |||||||||||||||||||||| Sbjct 1342 A-T------T---C---------A--TTTTCCCTTTTGTGCTATATAATATAAGTCTTTA 1380 Query 1665 TGCATATTTGATATATTTGCAGGCGTTGGTATTACCATTATGTAATTTTTATTATTGTTA 1724 |||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| ||| Sbjct 1381 TGCATA-TTGATATATTTGCAGGCGGTGGTATTACAATTATGTAATTTTTATTATTTTTA 1439 Query 1725 GAAGAAGAAATTATTGGATC-TTTGAAAAAAGCACATGTTATCTCATCTTAGACAATGTA 1783 |||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||| Sbjct 1440 GAAGAAGAAATTATTGGATCATTGGAAAAAAACACATGAAATCTCATCTTAGACAATGTA 1499 Query 1784 TAATGTTTTTATTCTATTTATATA 1807 |||||||||||||||||||||||| Sbjct 1500 TAATGTTTTTATTCTATTTATATA 1523 > Ahg476830 jgi|Araly1|476830|fgenesh2_kg.2__1960__AT1G76700.1 Length=1606 Score = 1099 bits (595), Expect = 0.0 Identities = 942/1107 (85%), Gaps = 34/1107 (3%) Strand=Plus/Plus Query 371 GATTGATTTGATAAT-TATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCC 429 |||||||||| | || ||||||||||| ||||||| |||||||| ||||| ||||||| Sbjct 199 GATTGATTTG-TGATCGATGGTGAAGGAAACGGAGTACTACGATGTGCTCGGAGTTAGCC 257 Query 430 CCACCGCTACGGAGGCTGAGATTAAGAAAGCTTATTACATCAAGGCACGCCAAGTGCATC 489 | || ||||| || |||||||| ||||||||||| ||||| |||||||||||||| |||| Sbjct 258 CAACTGCTACAGAAGCTGAGATCAAGAAAGCTTACTACATAAAGGCACGCCAAGTTCATC 317 Query 490 CAGATAAAAACCCTAATGATCCTCAGGCTGCTCATAATTTCCAGGTATTGGGAGAGGCCT 549 ||||||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||||| Sbjct 318 CAGATAAGAACCCTAATGATCCTCAAGCTGCACACAATTTCCAGGTTTTGGGAGAGGCCT 377 Query 550 ACCAAGTGCTAAGTGATCCAGGGCAACGTCAGGCCTATGACACATCTGGGAAGTCAGGGA 609 | ||||||||||||||| |||| ||||| || || ||||| ||| |||||||||||||| Sbjct 378 ATCAAGTGCTAAGTGATTCAGGACAACGCCAAGCTTATGATGCATGTGGGAAGTCAGGGA 437 Query 610 TTTCAACTGA-G--ATCATTGATCCTGCGGCTATATTTGCTATGCTTTTTGGGAGTGAAC 666 | || ||||| | ||||| ||||||||||| |||||||| ||||| ||||| || |||| Sbjct 438 TCTCCACTGATGCAATCATCGATCCTGCGGCAATATTTGCAATGCTATTTGGCAGCGAAC 497 Query 667 TCTTTGAAGAATACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCA 726 | |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 498 TTTTTGAAGAGTACATAGGACAGCTTGCTATGGCATCAATGGCTTCACTCGATATCTTCA 557 Query 727 CTGAAGGGGATCAGATTGATACTAAAAAGATTA-TAGAAAAAATGAGGGCTGTTCAGAAA 785 |||||||||||||| ||||||| ||||||| || ||||||||||||| ||| |||||| Sbjct 558 CTGAAGGGGATCAGTTTGATACCAAAAAGA-TACAAGAAAAAATGAGGATTGTCCAGAAA 616 Query 786 GAAAGAGAAGACAAACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAAC 845 |||||||||||||| ||||||||| |||| || ||||| |||||| |||| ||| ||| Sbjct 617 GAAAGAGAAGACAAGCTTGCTCAGGTTCTCAAAGACCGACTCAACGAATATGTGATAAAC 676 Query 846 AAAGATGAATTTACT-AGCAATGCTGAAGCTGAAGTAACAAGACTCT-CAAATGCAGCAT 903 | ||| ||||||| | || || ||||||||||||||| | ||||| | |||||||||| | Sbjct 677 AGAGACGAATTTA-TCAGTAACGCTGAAGCTGAAGTAGCTAGACT-TACAAATGCAGCTT 734 Query 904 ACGGGGTGGAAATGTTGAACACAATCGGATATATATATGTCAGACAAGCGGCAAAAGAGC 963 | || ||||| |||||||| ||||| || ||||||||||| |||||||| |||||||||| Sbjct 735 ATGGTGTGGATATGTTGAATACAATTGGGTATATATATGTAAGACAAGCAGCAAAAGAGC 794 Query 964 TTGGGAAGAAAGCTATTTATCTCGGTGTGCCATTCGTAGCTGAATGGTTTAGG-ACGAAA 1022 | ||||||||||||||||||||||| || |||||| | ||||||||||||||| || ||| Sbjct 795 TAGGGAAGAAAGCTATTTATCTCGGAGTACCATTCATTGCTGAATGGTTTAGGAAC-AAA 853 Query 1023 GGTCACTTCATCAAATCCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTG 1082 ||||||||||||||||| ||| |||||||||||||||| ||||| ||||| |||||| || Sbjct 854 GGTCACTTCATCAAATCTCAATTAACAGCTGCAACAGGCGCATATGCTTTGTTCCAGTTG 913 Query 1083 CAAGAGGAAATGAAAAGGCAACTAAGTGCTGAAGGCAATTATACCGAGAAGGAACTTGAA 1142 || ||||||||||||||||| |||| | ||||||| |||||||| ||| ||||||| || Sbjct 914 CAGGAGGAAATGAAAAGGCAGCTAAATACTGAAGGAAATTATACTGAGGAGGAACTCGAG 973 Query 1143 GAGTACATGAAGACCCATAAGAA-AGTAATGATTGATTCTCTGTGGAAGCTCAATGTTGC 1201 || ||| | || ||||||| || ||| ||||||||||| |||||||||||||||||||| Sbjct 974 GAATACCTTCAGGCCCATAA-AAGAGTGATGATTGATTCGCTGTGGAAGCTCAATGTTGC 1032 Query 1202 TGATATCGAAAGC-ACTATCTCCCGTGTTTGTGAGCAGGTACTTCAAGATCCC-ACTGCC 1259 |||||||||| || ||| | | ||||||||| ||| ||| ||||||||||| | ||| Sbjct 1033 TGATATCGAA-GCCACTCTTTGTCGTGTTTGTCAGCTGGTTCTTCAAGATCCAGAA-GCC 1090 Query 1260 AAGAGAGAGGAGCTTCGTGCAAGGGCCAAG-GGGTTAAAAACTCTGGGAAAGATCTTCCA 1318 || ||||||||||||||| |||| || ||| ||||||||||||||||| | ||||||||| Sbjct 1091 AAAAGAGAGGAGCTTCGTACAAGAGC-AAGAGGGTTAAAAACTCTGGGGAGGATCTTCCA 1149 Query 1319 GAAGAAC-AAGATAGCCAGTGAGAGTGATCCTTTAGTAAG-AGCCGAACTTCACAAACTA 1376 || || | |||| ||| ||||||||||||||||||| || | |||| ||| ||| || Sbjct 1150 GA-GAGCCAAGACAGCTAGTGAGAGTGATCCTTTAGCAAATAAT-GAACCTCAAAAATTA 1207 Query 1377 AACGGAAATGGTCAAG--A--AC-ATGATCATTCATCCACATCACCAAAATCTGATGAAG 1431 ||||||||||| ||| | || ||||| || |||| |||||||||||||| |||||| Sbjct 1208 AACGGAAATGG--AAGGGACGACCATGATGATACATCTACATCACCAAAATCCAATGAAG 1265 Query 1432 CATCTCGCTCTACCGT-TGGACCTCAG 1457 ||| || ||||||| | ||| |||||| Sbjct 1266 CATTTCACTCTACC-TCTGGTCCTCAG 1291 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70352682515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5