BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21130.1 Length=1365 Score E Sequences producing significant alignments: (Bits) Value Ahg472352 jgi|Araly1|472352|fgenesh2_kg.1__2306__AT1G21130.1 1991 0.0 Ahg472349 jgi|Araly1|472349|fgenesh2_kg.1__2303__AT1G21110.1 1677 0.0 > Ahg472352 jgi|Araly1|472352|fgenesh2_kg.1__2306__AT1G21130.1 Length=1325 Score = 1991 bits (1078), Expect = 0.0 Identities = 1255/1339 (94%), Gaps = 17/1339 (1%) Strand=Plus/Plus Query 14 CAACACTACAAAGAAGAAACACACTAtctctctctctctctcAATACATCTTTCCTCACT 73 ||||| |||||||||||||||||| | | | | | |||||||||||||||||||| || Sbjct 1 CAACAATACAAAGAAGAAACACAC-A-CAC-AT-ACACTCTCAATACATCTTTCCTCGCT 56 Query 74 TCTGATCAGTGTGATCACGTAGAGTGCCTTGAAGGagaagaaagaaacaaaaagaaataa 133 || |||||||| |||||||||||||||||||||||||||||||| || | || Sbjct 57 TCCGATCAGTGAGATCACGTAGAGTGCCTTGAAGGAGAAGAAAG--------AG--AGAA 106 Query 134 aaaTGGGATACCTTCTAGAAGAAACCTTAAGCTCTAACTCTAAAACCCCAATTGTTATCG 193 ||||||||||| || | | ||||||||||||||||||||||||||||||| ||||||| | Sbjct 107 AAATGGGATACTTTATTGGAGAAACCTTAAGCTCTAACTCTAAAACCCCATTTGTTATTG 166 Query 194 ATGATGATAACGAGTTGGGTTTGATGGCCGTGAGACTAGCCAATGCTGCTGCCTTTCCGA 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 167 ATGATGATAACGAGTTGGGTTTGATGGCCGTGAGACTAGCCAATGCTGCTGCCTTTCCAA 226 Query 254 TGGTTCTCAAAGCCGCCCTCGAGCTCGGTGTCTTTGACACTCTCTATGCTGAAGCCTCTC 313 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 227 TGGTTCTCAAAGCCGCCCTCGAGCTCGGTGTCTTTGACACTCTCTACGCCGAAGCCTCTC 286 Query 314 GCAGCGACTCGTTCCTTTCACCATCTGAAATAGCGAGTAAGCTACCAACTACACCTCGTA 373 ||| |||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct 287 GCACCGACTCGTTCCTCTCACCCTCTGAGATAGCGAGTAAACTACCAACTACACCTCGTA 346 Query 374 ACCCTGAGGCTCCGGTTTTGTTGGACCGTATGCTTCGTCTACTCGCTAGCTATTCTGTGG 433 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 347 ACCCTGAGGCTCCGGTTTTGTTGGACCGCATGCTTCGTCTACTCGCTAGCTATTCTGTGG 406 Query 434 TCAAGTGTGGTAAGGTCTCAGAAGGAAAGGGTGAGAGGGTCTACAGAGCAGAGCCAATTT 493 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 407 TCAAGTGTGGTAAGGTCTCAGAAGGAAAGGGTGAGAGGGTCTACAGAGCCGAGCCAATTT 466 Query 494 GCAGGTTTTTCTTGAAGGATAACATTCAAGATATTGGATCCCTTGCTTCTCAAGTCATTG 553 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 467 GCAGGTTCTTCTTGAAGGATAACATTCAAGATATTGGATCCCTTGCTTCTCAAGTCATTG 526 Query 554 TCAATTTCGATAGCGTCTTCCTCAATACTTGGGCACAATTGAAAGACGTGGTTCTAGAAG 613 ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 527 TCAATTTCGATAGTGTCTTCCTCAATACTTGGGCACAATTGAAAGATGTGGTGCTAGAAG 586 Query 614 GAGGAGATGCATTTGGCCGCGCACATGGTGGTATGAAGCTCTTTGACTATATGGGTACAG 673 |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 587 GAGGTGATGCATTTGGCCGCGCACATGGTGATATGAAACTCTTTGACTATATGGGTACAG 646 Query 674 ATGAGAGATTCAGCAAACTATTTAACCAGACCGGTTTTACCATTGCGGTTGTGAAGAAGG 733 |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 647 ATGAGAGATTCAGCAAGCTCTTTAACCAAACCGGTTTTACCATTGCGGTTGTGAAGAAGG 706 Query 734 CTCTTGAAGTTTACCAAGGCTTCAAAGGTGTGAATGTTTTAGTTGATGTGGGAGGAGGAG 793 ||||||| ||||||||||| ||||||| ||||||||| || |||||||| ||||| |||| Sbjct 707 CTCTTGAGGTTTACCAAGGTTTCAAAGATGTGAATGTGTTGGTTGATGTAGGAGGTGGAG 766 Query 794 TTGGTAACACTCTTGGTGTTGTTGCTTCTAAGTATCCAAATATTAAGGGTATCAACTTTG 853 |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| |||| Sbjct 767 TTGGTAACACCCTTGGTGTTGTTACTTCTAAGTATCCCAATATTAAGGGTATCAATTTTG 826 Query 854 ATCTAACCTGTGCCTTGGCACAAGCACCTTCTTATCCCGGTGTGGAGCATGTTGCCGGAG 913 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 827 ATCTAACTTGTGCCTTGGCACAAGCACCCTCTTATCCCGGTGTGGAGCATGTTGCCGGAG 886 Query 914 ATATGTTTGTGGATGTCCCAACCGGAGATGCCATGATCTTGAAACGTATACTTCATGATT 973 ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 887 ATATGTTCGTAGATGTCCCAACCGGAGATGCTATGATCTTGAAACGTATACTTCATGATT 946 Query 974 GGACCGATGAAGATTGTGTCAAGATTCTTAAGAATTGTTGGAAATCACTACCAGAAAGCG 1033 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 947 GGACCGATGAAGATTGTGTCAAGATTCTTAAGAATTGTTGGAAATCACTACCAGAAAATG 1006 Query 1034 GTAAAGTAGTTGTTATAGAATTAGTCACTCCTGATGAGGCAGAGAATGGAGACATCAACG 1093 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1007 GTAAAGTGGTTGTCATAGAATTAGTCACTCCTGATGATGCAGAGAATGGAGACATCAACG 1066 Query 1094 CAAACATTGCCTTTGACATGGACATGTTAATGTTCACACAATGTTCCGGAGGAAAAGAGA 1153 |||||||||||||||||||||||||||||||||| || |||||||| || |||||||||| Sbjct 1067 CAAACATTGCCTTTGACATGGACATGTTAATGTTTACCCAATGTTCTGGTGGAAAAGAGA 1126 Query 1154 GATCAAGAGCTGAGTTTGAAGCTTTGGCTGCAGCTTCTGGCTTTACCCATTGCAAGTTCG 1213 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1127 GATCAAGAGCTGAGTTTGAAGCTTTGGCTGCAGCTTCTGGCTTCACCCATTGCAAGTTCG 1186 Query 1214 TTTGCCAAGCTTATCACTGCTGGATTATTGAGTTCTGTAAATAAAATGTGTGAAATGTAA 1273 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1187 TTTGCCAAGCTTATCACTGCTGGATTATTGAGTTCTGTAAATAAAATGTGTTAAATGTAA 1246 Query 1274 AACAAAATCGTCGTTAATTATATATTTCCATCTTTGTTGCCATTCTT-TCTTGATATCTT 1332 ||| |||||||||||||| || ||||| |||||||||||| ||| || |||||||||||| Sbjct 1247 AACTAAATCGTCGTTAATAAT-TATTTGCATCTTTGTTGCAATT-TTCTCTTGATATCTT 1304 Query 1333 TGTCTTCGAGTAATAAAAG 1351 |||| |||||||||||||| Sbjct 1305 TGTCATCGAGTAATAAAAG 1323 > Ahg472349 jgi|Araly1|472349|fgenesh2_kg.1__2303__AT1G21110.1 Length=1264 Score = 1677 bits (908), Expect = 0.0 Identities = 1069/1149 (93%), Gaps = 2/1149 (0%) Strand=Plus/Plus Query 122 aaaaagaaataaaaaTGGGATACCTTCTAGAAGAAACCTTAAGCTCTAACTCTAAAACCC 181 ||||||||| | |||||||||||||| | ||||||||| ||||||||||| ||||||||| Sbjct 1 AAAAAGAAAGAGAAATGGGATACCTTTTTGAAGAAACCGTAAGCTCTAACCCTAAAACCC 60 Query 182 CAATTGTTATCGATGATGATAACGAGTTGGGTTTGATGGCCGTGAGACTAGCCAATGCTG 241 |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| | Sbjct 61 CAATTGTTATTGATGATGATAACGAGTTGGGTTTGATGGCCGTGAGGCTTGCCAATGCCG 120 Query 242 CTGCCTTTCCGATGGTTCTCAAAGCCGCCCTCGAGCTCGGTGTCTTTGACACTCTCTATG 301 | |||||||| |||||||||||||| |||| ||||||||||| |||||||||||||| | Sbjct 121 CCGCCTTTCCAATGGTTCTCAAAGCTTCCCTTGAGCTCGGTGTATTTGACACTCTCTACG 180 Query 302 CTGAAGCCTCTCGCAGCGACTCGTTCCTTTCACCATCTGAAATAGCGAGTAAGCTACCAA 361 ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 181 CTGAAGCCTCTCGCACCGACTCGTTCCTTTCACCCTCTGAGATAGCGAGTAAGCTACCAA 240 Query 362 CTACACCTCGTAACCCTGAGGCTCCGGTTTTGTTGGACCGTATGCTTCGTCTACTCGCTA 421 ||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||||| Sbjct 241 CTACACCCCGTAACCCTGGGGCTCCGGTTCTGTTGGACCGCATGCTTCGTCTACTCGCTA 300 Query 422 GCTATTCTGTGGTCAAGTGTGGTAAGGTCTCAGAAGGAAAGGGTGAGAGGGTCTACAGAG 481 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 301 GCTATTCTATGGTCAAGTGTGGTAAGGTCTCAGAAGGAAAGCGTGAGAGGGTCTATAGAG 360 Query 482 CAGAGCCAATTTGCAGGTTTTTCTTGAAGGATAACATTCAAGATATTGGATCCCTTGCTT 541 | |||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||| Sbjct 361 CGGAGCCAATTTGCAGATTCTTCCTGAAGAATAACATTCAAGATATTGGATCCCTTGCTT 420 Query 542 CTCAAGTCATTGTCAATTTCGATAGCGTCTTCCTCAATACTTGGGCACAATTGAAAGACG 601 |||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| | Sbjct 421 CTCAAGTCATTGTCAATTTCGACAGCGTCTTCCTTAATACCTGGGCACAATTGAAAGATG 480 Query 602 TGGTTCTAGAAGGAGGAGATGCATTTGGCCGCGCACATGGTGGTATGAAGCTCTTTGACT 661 |||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| | Sbjct 481 TGGTGCTAGAAGGAGGAGATGCGTTTGGGCGTGCACATGGTGGCATGAAACTCTTTGATT 540 Query 662 ATATGGGTACAGATGAGAGATTCAGCAAACTATTTAACCAGACCGGTTTTACCATTGCGG 721 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 541 ATATGGGTACAGATGAGAGATTCAGCAAGCTCTTTAACCAGACCGGTTTTACCATTGCGG 600 Query 722 TTGTGAAGAAGGCTCTTGAAGTTTACCAAGGCTTCAAAGGTGTGAATGTTTTAGTTGATG 781 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 601 TTGTGAAGAAGGCTCTTGAAGTTTACCAAGGCTTCAAAGGTGTGAATGTGTTGGTTGATG 660 Query 782 TGGGAGGAGGAGTTGGTAACACTCTTGGTGTTGTTGCTTCTAAGTATCCAAATATTAAGG 841 ||||||| |||||||||||||| |||||||||||| ||||||||||||| | |||||||| Sbjct 661 TGGGAGGTGGAGTTGGTAACACCCTTGGTGTTGTTACTTCTAAGTATCCCAGTATTAAGG 720 Query 842 GTATCAACTTTGATCTAACCTGTGCCTTGGCACAAGCACCTTCTTATCCCGGTGTGGAGC 901 ||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| || | Sbjct 721 GTATCAATTTTGATCTAACTTGCGCCTTGGCACAAGCACCCTCTTATCCCGGTGTAGAAC 780 Query 902 ATGTTGCCGGAGATATGTTTGTGGATGTCCCAACCGGAGATGCCATGATCTTGAAACGTA 961 ||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||| Sbjct 781 ATGTTGCGGGAGATATGTTCGTAGATGTCCCAACCGGAGATGCTATGATCTTGAAACGTA 840 Query 962 TACTTCATGATTGGACCGATGAAGATTGTGTCAAGATTCTTAAGAATTGTTGGAAATCAC 1021 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 841 TACTTCATGATTGGACCGACGAAGATTGTGTGAAGATTCTTAAGAATTGTTGGAAATCAC 900 Query 1022 TACCAGA-AAGCGGTAAAGTAGTTGTTATAGAATTAGTCACTCCTGATGAGGCAGAGAAT 1080 ||||||| || ||||||||| ||||| |||||||||||||||||| |||| ||||||||| Sbjct 901 TACCAGACAA-CGGTAAAGTGGTTGTCATAGAATTAGTCACTCCTAATGACGCAGAGAAT 959 Query 1081 GGAGACATCAACGCAAACATTGCCTTTGACATGGACATGTTAATGTTCACACAATGTTCC 1140 ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 960 GGAGACATCAATGCAAACATTGCCTTTGACATGGACATGTTAATGTTTACCCAATGTTCC 1019 Query 1141 GGAGGAAAAGAGAGATCAAGAGCTGAGTTTGAAGCTTTGGCTGCAGCTTCTGGCTTTACC 1200 |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||| Sbjct 1020 GGAGGAAAAGAGAGATCACGAGCTGAATTTGAATCTTTGGCTGCAGCTTCTGGCTTCACC 1079 Query 1201 CATTGCAAGTTCGTTTGCCAAGCTTATCACTGCTGGATTATTGAGTTCTGTAAATAAAAT 1260 ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1080 CATTGCATGTTTGTTTGCCAAGCTTATCACTGCTGGATTATTGAGTTCTGCAAATAAAAT 1139 Query 1261 GTGTGAAAT 1269 ||||||||| Sbjct 1140 GTGTGAAAT 1148 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51084708780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5