BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21400.1 Length=1955 Score E Sequences producing significant alignments: (Bits) Value Ahg313033 jgi|Araly1|313033|fgenesh1_pm.C_scaffold_1001813 2172 0.0 > Ahg313033 jgi|Araly1|313033|fgenesh1_pm.C_scaffold_1001813 Length=1419 Score = 2172 bits (1176), Expect = 0.0 Identities = 1342/1423 (94%), Gaps = 8/1423 (1%) Strand=Plus/Plus Query 67 ATGGCGATCTGGTTTGCTAGATCCAAAACCCTTGTTTCTAGCTTGAGACATAATCTAAAT 126 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1 ATGGCGATCTGGTTTGCTAGATCCAAAAACCTTGTTTCTAGCTTGAGACATAATCTGAAT 60 Query 127 TTGTCGACAATTCTCATA-AAACGTGATTACTCTCATCGTCCCATCTTC-TAT--ACAAC 182 |||||| | ||||||| | ||| | ||||||| || |||||| |||||| | | ||||| Sbjct 61 TTGTCGGCGATTCTCA-ACAAATGCGATTACTTTCCTCGTCCGATCTTCTTTTCAACAAC 119 Query 183 TTCTCAGTTATCTTCAACGGCGTATTTGAGTCCCTTCGGTAGCCTCCGTCATGAGTCTAC 242 ||||||||||||||| ||| ||| |||||||||| ||| ||||||||||||||||||||| Sbjct 120 TTCTCAGTTATCTTCCACGTCGTTTTTGAGTCCCGTCGCTAGCCTCCGTCATGAGTCTAC 179 Query 243 GGCCGTGGAGACACAGGCTGATCATTTGGTTCAGCAGATTGATGAAGTCGATGCCCAGGA 302 ||| |||||||||||| |||||||||||||| ||||||||||||| ||||| ||||| Sbjct 180 GGCTGTGGAGACACAGCCTGATCATTTGGTT---CAGATTGATGAAGACGATGGTCAGGA 236 Query 303 ACTGGATTTCCCAGGAGGCAAAGTCGGTTACACATCGGAGATGAAATTCATACCGGAATC 362 | ||||||| || ||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 237 ATTGGATTTTCCGGGAGGCAAAGTCGGTTACACATCTGAAATGAAATTCATACCGGAATC 296 Query 363 ATCTTCAAGGAGGATTCCATGTTACCGGGTTCTTGACGAAGACGGACGAATCATCCCCGA 422 |||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 297 ATCTTCTCGGAGAATTCCGTGTTACCGGGTTCTTGACGAAGACGGACGAATTATCCCCGA 356 Query 423 TAGCGATTTTATTCCGGTGAGTGAGAAACTCGCTGTTAGAATGTACGAACAAATGGCGAC 482 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TAGCGATTTTATACCGGTGAGTGAGAAACTCGCTGTTAGAATGTACGAACAAATGGCGAC 416 Query 483 GCTACAAGTAATGGATCACATCTTCTACGAAGCTCAACGTCAAGGAAGAATATCTTTTTA 542 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 417 GCTACAAGTAATGGATCACATCTTCTACGAAGCTCAACGTCAAGGAAGAATCTCGTTTTA 476 Query 543 TCTTACTTCCGTCGGAGAAGAAGCCATTAACATCGCTTCAGCAGCTGCTCTCAGTCCTGA 602 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 477 TCTTACTTCCGTCGGAGAAGAAGCCATTAACATCGCTTCTGCAGCTGCTCTCAGTCCTGA 536 Query 603 CGACGTCGTTTTACCTCAGTACCGAGAACCTGGAGTTCTTTTGTGGCGTGGCTTCACGTT 662 ||| |||||||||||||| |||||||| |||||||||||| | ||||||||||||||||| Sbjct 537 CGATGTCGTTTTACCTCAATACCGAGAGCCTGGAGTTCTTCTATGGCGTGGCTTCACGTT 596 Query 663 GGAGGAGTTTGCTAATCAGTGTTTTGGGAACAAAGCTGATTATGGCAAAGGCAGACAAAT 722 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 597 GGAGGAGTTTGCTAATCAGTGTTTTGGGAATAAAGCTGATTATGGCAAAGGCAGACAAAT 656 Query 723 GCCAATTCATTACGGTTCCAATCGTCTTAATTACTTCACTATCTCCTCTCCAATTGCCAC 782 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 657 GCCGATTCATTACGGTTCCAATCGTCTCAATTACTTCACTATCTCCTCTCCAATTGCCAC 716 Query 783 GCAACTTCCTCAAGCTGCTGGAGTTGGTTATTCTTTGAAAATGGACAAGAAGAATGCTTG 842 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 717 GCAACTTCCTCAAGCTGCTGGAGTTGGTTATTCTCTGAAAATGGACAAGAAGAACGCTTG 776 Query 843 TACTGTTACATTCATCGGAGATGGTGGCACAAGCGAGGGAGATTTTCACGCCGGATTGAA 902 | | || |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 777 TGCAGTAACATTCATCGGAGATGGTGGCACAAGCGAGGGAGATTTCCACGCCGGATTGAA 836 Query 903 TTTTGCGGCCGTAATGGAAGCTCCGGTTGTGTTTATATGTCGGAACAACGGTTGGGCGAT 962 ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 837 TTTTGCGGCAGTAATGGAAGCTCCGGTCGTGTTTATCTGTCGGAACAACGGTTGGGCGAT 896 Query 963 TAGTACTCATATCTCAGAACAGTTTAGAAGTGATGGAATAGTTGTGAAAGGTCAAGCTTA 1022 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 897 TAGTACTCATATCTCAGAACAGTTCAGAAGTGATGGAATTGTTGTGAAAGGTCAAGCTTA 956 Query 1023 CGGTATCCGAAGCATCCGTGTGGACGGTAACGATGCACTTGCGGTTTATAGTGCTGTACG 1082 || ||||||||||| |||||||||||||| |||||||| |||||||||| ||| ||||| Sbjct 957 TGGAATCCGAAGCATTCGTGTGGACGGTAATGATGCACTCGCGGTTTATACTGCGGTACG 1016 Query 1083 CTCAGCTCGAGAAATGGCTGTAACAGAACAAAGACCTGTTCTCATTGAGATGATGACATA 1142 ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 1017 CTCGGCTCGAGAAATGGCTGTAACAGAACAAAGACCAGTTCTCATTGAGGCGATGACATA 1076 Query 1143 TAGAGTAGGACATCATTCTACATCAGATGATTCAACTAAGTACAGGGCGGCGGATGAAAT 1202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 TAGAGTAGGACATCATTCTACATCAGATGATTCAACTAAGTACAGGGCGGCGGATGAAAT 1136 Query 1203 CCAGTACTGGAAAATGTCGAGAAACCCTGTGAATAGATTTCGGAAATGGGTCGAAGATAA 1262 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1137 CCAGTACTGGAAAATGTCGAGAAACCCTGTGAATAGATTCCGGAAATGGGTCGAGGATAA 1196 Query 1263 CGGATGGTGGAGTGAGGAAGATGAATCCAAGCTAAGATCTAACGCAAGAAAACAGCTTCT 1322 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1197 CGGATGGTGGAGTGAGGAAGATGAATCCAAGCTAAGATCTAAGGCAAGAAAACAGCTTCT 1256 Query 1323 GCAAGCGATTCAGGCTGCGGAGAAGTGGGAGAAACAACCATTGACAGAGTTGTTTAACGA 1382 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 GCAAGCGATTCAGGCGGCAGAGAAGTGGGAGAAACAACCATTGACAGAGTTGTTTAACGA 1316 Query 1383 TGTATATGATGTTAAACCGAAGAACCTAGAAGAGCAAGAACTTGGTTTGAAGGAATTAGT 1442 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1317 TGTATATGATGTTAAACCGAAGAATCTAGAAGAGCAAGAACTTGGTTTAAAGGAATTAGT 1376 Query 1443 AAAGAAACAACCTCAAGATTATCCTCCTGGCTTTCATGTTTGA 1485 | |||||||||||||||||||||||||||| |||||||||||| Sbjct 1377 AGAGAAACAACCTCAAGATTATCCTCCTGGTTTTCATGTTTGA 1419 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73476082605 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5