BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21460.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921118 jgi|Araly1|921118|scaffold_102399.1 1247 0.0
Ahg911952 jgi|Araly1|911952|Al_scaffold_0001_2206 231 6e-60
> Ahg921118 jgi|Araly1|921118|scaffold_102399.1
Length=784
Score = 1247 bits (675), Expect = 0.0
Identities = 749/785 (95%), Gaps = 3/785 (0%)
Strand=Plus/Plus
Query 63 CACCTTTGAGATCAAAAGATGAACATCGCTCACACTATCTTCGGCGTTTTCGGAAATGCA 122
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3 CACCTTTGAGATCAAAAGATGAACATCGCTCACACCATCTTCGGCGTTTTCGGAAATGCA 62
Query 123 ACTGCTCTGTTTCTTTTCTTGGCTCCTTCGATAACATTCAAGAGAATCATCAAGAACAAA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 ACTGCTCTGTTTCTTTTCTTGGCTCCTTCGATAACATTCAAGAGAATCATCAAGAACAAA 122
Query 183 TCCACTGAACAATTCTCTGGTATCCCTTATCCAATGACTCTCCTCAACTGTCTCCTCTCT 242
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 TCCACCGAACAATTCTCTGGTATCCCTTACCCAATGACTCTCCTCAACTGTCTCCTCTCC 182
Query 243 GCTTGGTATGGACTTCCCTTTGTGTCAAAAGACAACACACTTGTGAGCACAATCAATGGC 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GCTTGGTATGGACTTCCCTTTGTGTCAAAAGACAACACACTTGTGAGCACAATCAATGGA 242
Query 303 ACAGGAGCAGTGATCGAAACAGTCTACGTGTTAATCTTTCTTTTCTACGCACCAAAGAAG 362
||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 243 ACAGGAGCAGTAATCGAAACAGTCTACGTGTTGATCTTCCTCTTCTACGCACCAAAGAAA 302
Query 363 GAGAAAATTAAGATCTTTGGTATCTTCTCTTGCGTTTTGGCTGTATTCGCAACAGTAGCT 422
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 303 GAGAAAGTTAAGATCTTTGGTATCTTCTCTTGCGTTTTGGCCGTATTCGCAACAGTAGCT 362
Query 423 CTCGTCTCTCTCTTTGCTCTTCAAGGAAACGGTAGAAAACTCTTTTGTGGTCTCGCAGCT 482
|| ||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||
Sbjct 363 CTTGTCTCTCTCTTTGCTCTCCATGGAAATGGTAGAAAACTCTTCTGTGGTCTCGCAGCT 422
Query 483 ACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGAGATTGGTGGTAAAG 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 423 ACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGAGATTGGTGATAAAG 482
Query 543 ACGAAGAGTGTAGAGTTTATGCCATTCTTTTTGTCACTCTTTGTCTTCCTCTGTGGTACT 602
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 483 ACGAAGAGTGTTGAGTTTATGCCATTCTTTTTGTCTCTCTTTGTCTTCCTCTGTGGTACT 542
Query 603 TCGTGGTTCGTCTATGGTCTAATCGGTCGTGACCCTTTTGTTGCAATCCCAAATGGGTTT 662
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 543 TCGTGGTTCGTCTATGGTCTTATCGGTCGTGACCCTTTTGTTGCAATACCAAATGGGTTT 602
Query 663 GGATGTGCATTAGGGACACTGCAATTGATACTATACTTCATCTACTGTGGAAACAAAGGA 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GGATGTGCATTAGGGACACTGCAATTGATACTATACTTCATCTACTGTGGAAACAAAGGC 662
Query 723 GAGAAATCTGCAGATGCTCAGAAAGATGAGAAGTCAGTGGAGATGAAAGATGATGAGAAG 782
|||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||
Sbjct 663 CAGAAATCTGCGGATGCTGAGAAAGATGAGAAGTCGGTGGAGATGAAAGGTGATGAGAAG 722
Query 783 AAGCAGAATGTGGTTAATGGAAAGCAAGACCTTCAAGTTTAAAAGAGCTTTTGAGGATGA 842
||||| ||||||||||||| ||||||||||||||||||| || | ||||||| |||||
Sbjct 723 AAGCACCATGTGGTTAATGGGAAGCAAGACCTTCAAGTTTGAA-G--CTTTTGAAGATGA 779
Query 843 TTTGG 847
|||||
Sbjct 780 TTTGG 784
> Ahg911952 jgi|Araly1|911952|Al_scaffold_0001_2206
Length=1773
Score = 231 bits (125), Expect = 6e-60
Identities = 159/176 (90%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 347 CTACGCACCAAAGAAGGAGAAAATTAAGATCTTTGGTATCTTCTCTTGCGTTTTGGCTGT 406
|||||||||||||||||||||| |||||||||||||||||| ||||||| ||| | ||
Sbjct 1773 CTACGCACCAAAGAAGGAGAAAGCAAAGATCTTTGGTATCTTCACTTGCGTCTTGACCGT 1714
Query 407 ATTCGCAACAGTAGCTCTCGTCTCTCTCTTTGCTCTTCAAGGAAACGGTAGAAAACTCTT 466
||||||||||||||||||||||||||||| ||| || || |||||| |||||||||||
Sbjct 1713 ATTCGCAACAGTAGCTCTCGTCTCTCTCTCTGCCCTCCATGGAAACTCAAGAAAACTCTT 1654
Query 467 TTGTGGTCTCGCAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCA 522
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 CTGTGGTATCGCAGCCACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCA 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5