BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21500.1 Length=617 Score E Sequences producing significant alignments: (Bits) Value Ahg472386 jgi|Araly1|472386|fgenesh2_kg.1__2340__AT1G21500.1 1009 0.0 > Ahg472386 jgi|Araly1|472386|fgenesh2_kg.1__2340__AT1G21500.1 Length=612 Score = 1009 bits (546), Expect = 0.0 Identities = 591/613 (96%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 1 ACTCTATCTTCTATTAGTGTGTTTACCAATTTT-TGTTACATCTCTTGCTTTTACATTTT 59 ||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||| Sbjct 1 ACTCTATCTTCTATTAGTGTGTTTACCAATTTTCT-TTACATCGCTCGCTTTTACATTTT 59 Query 60 CTTGAATTAGCCATGGTGGCACATTCACTCGTTCCTCTCTCACCGGCTGCTCACGCCGCC 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 60 CTTGAATTAGCCATGGTGGCACATTCACTCGTTCCTCTCTCACCGGCTGCTCACGCCACC 119 Query 120 AGACTCTCCTCTCCATCGCCGCGGTCACTGCCGCAGGCTCCTCCCGTCGTCCTTGCAGTT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AGACTCTCCTCTCCATCGCCGCGGTCACTGCCGCAGGCTCCTCCCGTCGTCCTTGCAGTT 179 Query 180 CCACCAATTAATCGCAGGACAATTTTGGTGGGGCTAGGCGGTGCGCTATGGAGTTGGAAC 239 ||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||| Sbjct 180 CCACCAATTAATCGCAGGACAATTTTGGTGGGGCTTGGGGGTGCATTTTGGAGTTGGAAC 239 Query 240 GCTCTGGCCGCTAAGGAGGAGGCAATGGCGGCAGCAAGACGGCCGCCTCCACCACCACCT 299 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 240 GCTCTGACCGCTAAGGAGGATGCAATGGCGGCAGCAAGACGGCCGCCTCCACCACCACCT 299 Query 300 AAGGAGAAGAAAGACCCGACCGTGACCGGAGTTCAGGCCAAGGTATTGGCGAGTAAGAAG 359 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 300 AAGGAGAAGAAAGACCCGACCGTGAGCGGAGTTCAGGCCAAGGTATTGGCGAGTAAGAAG 359 Query 360 CGTAAAGAAGAAATGAAGGCTTCCATTGCTAAACTTAGAGAGAAAGGCAAACCTGTTGTT 419 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CGCAAAGAAGAAATGAAGGCTTCCATTGCTAAACTTAGAGAGAAAGGCAAACCTGTTGTT 419 Query 420 GAAGCAAAACCATCCTCTTCTTCTTCAGAATAGCATCCGAGCAACAATTTAAACCCTTTC 479 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 GAAGCAAAACCATCTTCCTCTTCTTCAGAATAGCATCCAAGCAACAATTTAAACCCTTTC 479 Query 480 CATTAATTCATCTGTCTACCAAATTCATCCCTATGATGTTAATTCACTACTATATTTCGG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CATTAATTCATCTGTCTACCAAATTCATCCCTATGATGTTAATTCACTACTATATTTCAA 539 Query 540 TTTATTCTTATGCTGATTTTGTGGTAGTAAATTCAAAAGCATTCTAGCTTGTCAGAAATC 599 |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 540 TTTACTCCTATGCTGATTTTGTGGTAGTAAATCCAAAAGCATTCTAGCTTGTCAGAAATC 599 Query 600 ATCACAATTAGAT 612 ||||||||||||| Sbjct 600 ATCACAATTAGAT 612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22568766864 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5