BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21520.1 Length=636 Score E Sequences producing significant alignments: (Bits) Value Ahg921126 jgi|Araly1|921126|scaffold_102407.1 340 6e-93 > Ahg921126 jgi|Araly1|921126|scaffold_102407.1 Length=241 Score = 340 bits (184), Expect = 6e-93 Identities = 219/236 (93%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 43 ATAGTCTGAAGAAGATGAGCTCCGGAGAACTGAAGCCGTTCAAGAAGAAAGAAGGGAGTG 102 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 ATACTCTGAAGAAGATGAGCTCCGGAGAACTGAAGCCGTTCAAGAAGAAAGAAGGGAGTG 66 Query 103 TGATCCCAAAGGAGAGAGAGTTGGTGAAGACTAAAGCCGCCAAAGCCATTTTCTCTTTGT 162 |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 67 TGATCCCAAAGGAGCGAGAGTTGGTGAAGACTAAAGCCGTCAAAGCCATTTGCTCTTTGT 126 Query 163 TCCGTCCATCC-TGCGACGGTAAACAGAGTTCTCAGCCATCCCGTGACGGTGACGGTGAC 221 | ||||| ||| || || |||||||| ||||||||||||||||||||||||||| ||||| Sbjct 127 TTCGTCC-TCCATGTGATGGTAAACAAAGTTCTCAGCCATCCCGTGACGGTGACTGTGAC 185 Query 222 CATGACGGCAAGCGCGTGTATCCCACTCGCTACTGATCGGTCTTTTTCGTGGTGTT 277 | || |||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 186 CGCGATGGCAAGCGCGTGTATCCCACTCGCCCCTGATCGGTCTTTTTCATGGTGTT 241 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23293102287 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5