BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G21520.1

Length=636
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921126 jgi|Araly1|921126|scaffold_102407.1                        340    6e-93


> Ahg921126 jgi|Araly1|921126|scaffold_102407.1
Length=241

 Score =  340 bits (184),  Expect = 6e-93
 Identities = 219/236 (93%), Gaps = 2/236 (1%)
 Strand=Plus/Plus

Query  43   ATAGTCTGAAGAAGATGAGCTCCGGAGAACTGAAGCCGTTCAAGAAGAAAGAAGGGAGTG  102
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  7    ATACTCTGAAGAAGATGAGCTCCGGAGAACTGAAGCCGTTCAAGAAGAAAGAAGGGAGTG  66

Query  103  TGATCCCAAAGGAGAGAGAGTTGGTGAAGACTAAAGCCGCCAAAGCCATTTTCTCTTTGT  162
            |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  67   TGATCCCAAAGGAGCGAGAGTTGGTGAAGACTAAAGCCGTCAAAGCCATTTGCTCTTTGT  126

Query  163  TCCGTCCATCC-TGCGACGGTAAACAGAGTTCTCAGCCATCCCGTGACGGTGACGGTGAC  221
            | ||||| ||| || || |||||||| ||||||||||||||||||||||||||| |||||
Sbjct  127  TTCGTCC-TCCATGTGATGGTAAACAAAGTTCTCAGCCATCCCGTGACGGTGACTGTGAC  185

Query  222  CATGACGGCAAGCGCGTGTATCCCACTCGCTACTGATCGGTCTTTTTCGTGGTGTT  277
            |  || ||||||||||||||||||||||||  |||||||||||||||| |||||||
Sbjct  186  CGCGATGGCAAGCGCGTGTATCCCACTCGCCCCTGATCGGTCTTTTTCATGGTGTT  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23293102287


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5