BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21540.1 Length=1841 Score E Sequences producing significant alignments: (Bits) Value Ahg921129 jgi|Araly1|921129|scaffold_102410.1 2625 0.0 Ahg476888 jgi|Araly1|476888|fgenesh2_kg.2__2018__AT1G77240.1 148 1e-34 > Ahg921129 jgi|Araly1|921129|scaffold_102410.1 Length=1694 Score = 2625 bits (1421), Expect = 0.0 Identities = 1605/1696 (95%), Gaps = 4/1696 (0%) Strand=Plus/Plus Query 25 ACATTAACAAAAATCAAAGTATGGAACTCTTACTTCCACACCCTTCGAACTCAACACCTC 84 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACATAAACAAGAATCAAAGTATGGAACTCTTACTTCCACACCCTTCGAACTCAACACCTC 60 Query 85 TCACCGTCCTCGGCTTCTTAGACCGAGCCGCCTCTGTCTACGGCGACTGTCCGTCCATCC 144 ||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||| Sbjct 61 TCACCGTCCTCGGCTTCTTGGATCGAGCCGCCTCCGTCTATGGCGACTGTCCGTCCATCC 120 Query 145 TCCACACCACTAACACCGTCCACACTTGGTCCGAAACCCACAACCGCTGTCTTCGAATCG 204 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCCACGCCACTAACACCGTCCACACTTGGTCCGAAACCCACAACCGCTGTCTTCGAATCG 180 Query 205 CCTCGGCTCTCACTTCTTCCTCTCTCGGCATAAACCGAGGCCAAGTTGTCTCCGTCGTAG 264 |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| Sbjct 181 CCTCGGCTCTCACTTCATCCTCTCTCGGCATAAACCAAGGCCAAGTCATCTCCGTCGTAG 240 Query 265 GTCCCAACGTCCCGTCCGTCTACGAGCTTCAGTTTGCTGTCCCAATGTCCGGAGCCATCT 324 | |||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| Sbjct 241 GCCCCAACGTCCCGTCTGTTTACGAACTTCAGTTTGCTGTCCCAATGTCCGGAGCCATCT 300 Query 325 TAAACAACATCAACCCTCGTTTGGACGCACATGCACTCTCTGTCCTCCTGCGTCACAGTG 384 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 301 TAAACAACATCAACCCTCGCTTGGACGCACATGCACTCTCTGTCCTCCTGCGTCATAGTG 360 Query 385 AATCTAAGCTCGTTTTCGTCGATCCCAATTCAATCTCCGTAGTCCTCGAAGCAGTCTCGT 444 |||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 361 AATCTAAGCTCGTTTTTGTCGATCCCAACTCAATCTCCTTAGTCCTTGAAGCAGTCTCGT 420 Query 445 TCATGAGG-CAAAACGAGAAACCTCACCTTGTCCTCCTAGACGACGACCAAGAGGACGGT 503 | || || ||| ||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 421 TTTTG-GGACAACACGAGAAACCTCACCTTGTCCTCCTCGAAGACGACCAAGAGGACGGT 479 Query 504 TCTTTGTCTCCTTCGGCCGCATCAGATTTTCTTGACACATACCAAGGAGTTATGGAGAGA 563 |||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 480 TCTTCGTCTGCTTCGGCCGCATCAGATTTTCTTGACACATACCAAGGAATTATGGAGAGA 539 Query 564 GGAGATTCAAGATTCAAGTGGATCCGTCCTCAAACCGAGTGGCAGCCTATGATTCTCAAC 623 |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 540 GGAGATTCGAGATTCAGGTGGATCCGTCCTCAAACCGAGTGGCAGCCAATGATTCTCAAC 599 Query 624 TATACTTCTGGAACAACGTCATCTCCCAAAGGAGTAGTG-TTGAGCCACAGAGCAATTTT 682 || ||||||||||||||||| |||||||||||||| ||| || ||||||||||||||||| Sbjct 600 TACACTTCTGGAACAACGTCGTCTCCCAAAGGAGTTGTGCTT-AGCCACAGAGCAATTTT 658 Query 683 CATGCTAACCGTAAGCTCATTGCTTGACTGGCATTTTCCGAACAGGCCGGTTTACTTGTG 742 |||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 659 CATGCTAACCGTTAGCTCATTGCTTGATTGGCATTTTCCGAACCGGCCGGTTTACTTGTG 718 Query 743 GACTCTACCAATGTTCCACGCCAATGGTTGGGGGTATACATGGGGCACTGCGGCGGTTGG 802 |||||||||||||||||||||||| |||||||| || || ||||||||||| |||||||| Sbjct 719 GACTCTACCAATGTTCCACGCCAACGGTTGGGGATACACTTGGGGCACTGCAGCGGTTGG 778 Query 803 AGCCACCAACGTCTGCACCCGTAGAGTCGACGCGCCGACTATCTATGACTTGATCGATAA 862 |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 779 AGCCACCAACGTCTGCACGCGTAGAGTCGATGCGCCGACTATATATGACTTGATCGATAA 838 Query 863 GCATCACGTAACTCACATGTGTGCCGCACCAATGGTTCTCAACATGCTAACCAACTACCC 922 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 839 GCATCACGTAACTCACATGTGTGCGGCACCAATGGTTCTCAACATGCTAACCAATTACCC 898 Query 923 GTCTCGTAAACCGCTAAAGAACCCGGTTCAGGTTATGACCGCCGGAGCTCCACCTCCAGC 982 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 899 GTCTCGTAAACCGCTAAAGAACCCGGTTCAGGTTATGACCGCTGGAGCTCCACCTCCGGC 958 Query 983 AGCCATCATCTCAAGAGCAGAAACCCTAGGTTTCAACGTCGGTCATGGGTACGGTTTAAC 1042 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 AGCCATCATCTCCAGAGCAGAAACCCTAGGTTTCAACGTCGGTCATGGGTACGGTTTAAC 1018 Query 1043 GGAAACCGGAGGCCCGGTTGTGTCATGTGCTTGGAAGGCTGAGTGGGATCATCTTGATCC 1102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 GGAAACCGGAGGCCCGGTTGTGTCATGTGCTTGGAAGGCTGAGTGGGATCATCTTGATCC 1078 Query 1103 ATTGGAAAGAGCAAGACTGAAATCAAGACAAGGAGTAAGAACCATCGGATTCGCGGAAGT 1162 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1079 ATTGGAGAGAGCTAGACTGAAATCAAGACAAGGAGTAAGAACCATCGGATTCGCGGATGT 1138 Query 1163 TGATGTTAGGGACCCGAGAACCGGGAAGAGTGTGGAACACGACGGTGTTTCCGTTGGAGA 1222 |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1139 CGATGTTAGGGACCCGAGAACCGGGAAGAGTGTGGAACACGACGGAGTTTCTGTAGGAGA 1198 Query 1223 GATCGTTTTAAAAGGCGGTTCGGTTATGCTTGGTTACTACAAAGACCCTGAAGGAACCGC 1282 ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || Sbjct 1199 GATCGTTTTAAAAGGTGGGTCGGTTATGCTTGGTTACTACAAAGACCCGGAAGGAACAGC 1258 Query 1283 AGCGTGTATGAGAGAGGACGGATGGTTCTACAGCGGAGACGTAGGAGTTATACATGAAGA 1342 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1259 GGCGTGTATGAGAGAGGACGGATGGTTCTACAGCGGAGACGTAGGGGTTATACATAAAGA 1318 Query 1343 CGGTTACTTGGAAGTTAAAGACCGGTCAAAGGATGTGATCATATGCGGAGGAGAGAACAT 1402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 CGGTTACTTGGAAGTTAAAGACCGGTCAAAGGATGTGATCATATGCGGAGGAGAGAACAT 1378 Query 1403 AAGTAGTGCCGAGGTTGAGACGGTTCTGTATACAAATCCAGTAGTTAAAGAAGCCGCGGT 1462 ||||||||| ||||||||||||||||||||||||||||| || || || ||||| ||||| Sbjct 1379 AAGTAGTGCTGAGGTTGAGACGGTTCTGTATACAAATCCGGTGGTGAAGGAAGCTGCGGT 1438 Query 1463 GGTGGCTAAACCGGATAAGATGTGGGGAGAGACACCGTGTGCTTTTGTGAGCTTGAAGTA 1522 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1439 GGTGGCTAAACCGGATAAAATGTGGGGAGAGACGCCGTGTGCTTTTGTGAGCTTGAAGTA 1498 Query 1523 TGATAGTAATGGTAATGGGTTGGTGACTGAGAGGGAAATAAGGGAGTTTTGTAAGACGAG 1582 ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct 1499 TGATAATAATGGTAATGGTTTGGTGACAGAGAGGGAAATAAGGGAGTTTTGTAAGACAAA 1558 Query 1583 GTTACCTAAGTATATGGTTCCAAGGAAAGTAATTTTTCAGGAGGAGCTTCCAAAGACTTC 1642 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1559 GTTACCTAAGTATATGGTTCCGAGGAAAGTGATTTTTCAGGAGGAGCTTCCAAAGACTTC 1618 Query 1643 TACTGGAAAGATACAGAAGTTTCTTCTAAGACAAATGGCTAAGTCTCTGCCTTAAAGATT 1702 ||| |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1619 TACGGGAAAGATCCAAAAGTTTCTTCTTAGACAAATGGCTAAGTCCCTGCCTTAAAGATT 1678 Query 1703 CGCTTGAGTTATTGAG 1718 | ||| |||||||||| Sbjct 1679 CACTTAAGTTATTGAG 1694 > Ahg476888 jgi|Araly1|476888|fgenesh2_kg.2__2018__AT1G77240.1 Length=1596 Score = 148 bits (80), Expect = 1e-34 Identities = 112/128 (88%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1560 ATAAGGGAGTTTTGTAAGACGAGGTTACCTAAGTATATGGTTCCAAGGAAAGTAATTTTT 1619 ||||||||||||||||| || | | | || |||||||||||||||||||| || |||| Sbjct 1459 ATAAGGGAGTTTTGTAAAACCAAGCTGCCAAAGTATATGGTTCCAAGGAATGTGGTTTTC 1518 Query 1620 CAGGAGGAGCTTCCAAAGACTTCTACTGGAAAGATACAGAAGTTTCTTCTAAGACAAATG 1679 | ||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct 1519 CTGGAAGAGCTTCCAAAGACTTCTACTGGAAAGATTCAAAAGTTTCTTCTCAGACAAATT 1578 Query 1680 GCTAAGTC 1687 |||||||| Sbjct 1579 GCTAAGTC 1586 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69133794675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5