BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21660.1
Length=2027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472404 jgi|Araly1|472404|fgenesh2_kg.1__2358__AT1G21660.1 2819 0.0
> Ahg472404 jgi|Araly1|472404|fgenesh2_kg.1__2358__AT1G21660.1
Length=1949
Score = 2819 bits (1526), Expect = 0.0
Identities = 1760/1869 (94%), Gaps = 32/1869 (2%)
Strand=Plus/Plus
Query 169 GATCTGAT-TGGGGGATCGTGAAATTCGTTTGTG----TTTTCTGCTCGATTAACCGGAG 223
|||| ||| |||| ||||||||| ||||||||| |||| ||||||||||| |||||
Sbjct 96 GATC-GATCTGGGAAATCGTGAAA-TCGTTTGTGTTTTTTTTTTGCTCGATTAATCGGAG 153
Query 224 AAATGGACGAGTTTGGTGTTCTAACGGAGCGTTATGGGATTAAGCCACAAGGTAAATCTG 283
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 154 AAATGGACGAGTTTGGTGTTCTTACGGAGCGTTATGGGATTAAACCACAAGGTAAATCTG 213
Query 284 CTCCGATGGCTGCTTCTAAGCGTAACCCTAACAACAATGGTCAGAGCTGGAATTTCGGTA 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CTCCGATGGCTGCTTCTAAGCGTAACCCTAACAACAATGGTCAGAGCTGGAATTTCGGTA 273
Query 344 CAGGCTCCTCTGGTTTAAATGCAAAGTCGACGTCTTTTTCTTCCAATAGCTCTTGGAATA 403
|||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 274 CAGG---CTCTGGTCTAAATGCAAAGTCGACGTCTTTTTCTTCGAATAGCTCTTGGAATA 330
Query 404 AGGATTCTACTAATGGGTCTTTGTTTGATGGTGACGATATTTTCTTTCCGGCTAACTCTA 463
|||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 331 AGGAATCTACTAATGGGTCTTTGTATGATGGTGACGACATTTTCTTTCCGGCTAACTCTA 390
Query 464 CTAATAGGAA-GGTTTCGAATGATTTTGATGTTTTTGCTGGGTTGAACAAATCTTCATCT 522
|||||||||| || |||||||||||| ||||||||| |||||||||| ||||| ||||||
Sbjct 391 CTAATAGGAATGG-TTCGAATGATTTCGATGTTTTTTCTGGGTTGAAAAAATCATCATCT 449
Query 523 TCCGGTGATAATAGCAAGTCTTCATTGAACGATGATTTGTTCTTCTCCAATTTTGGGAAT 582
|||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||
Sbjct 450 TCCGGTGATAATAGCAAGTCGTCTTTGAACGATGATTTGTTGTTCTCTAATTTTGGGAAT 509
Query 583 CCGGGGAAGACAACTCCTTCTTCA-GCTGATGACTTGTTTGGTGGTGTTATTCCTGGGTC 641
||| |||| || |||| | | | |||||| ||||||||||||||||| ||||||||
Sbjct 510 TTGGGAAAGA-AA--ACTTC-TGATGATGATGATTTGTTTGGTGGTGTTATGCCTGGGTC 565
Query 642 TAAAAGCTCTGATAGTGTTAAGAATGATGATTTGTTTGGGTCATTCTCTTCATCGGAGAA 701
||||| ||| | |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 566 TAAAACCTCCGCTAGTGTTAAGAATGATGATTTGTTTGGGTCCTTCTCTTCATCGGAAAA 625
Query 702 GCAATATGCTGCTGCGGTTGATGATTTGTTGGGTTTGGGGAAGAATGAAGCTGGTTATGA 761
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 626 GCAATATGCTGCTGCGGTCGATGATTTGTTGGG---AGGGAAGAATGAAGCTGGTTATGA 682
Query 762 TGGATTGATACCTGGTTTTGGTGGAAGTACTCAGACGACTAGCAGCAAGACTACACCGTC 821
||||||||||||||||||||||| ||||||||||||||||| |||||||||| | |||||
Sbjct 683 TGGATTGATACCTGGTTTTGGTGCAAGTACTCAGACGACTATCAGCAAGACTGCTCCGTC 742
Query 822 GAACTTTGATGCTACTGATCCTTTTGTGGTCCTAGAATCAACCACTTCTACTGGTCTGTT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 743 GAACTTTGATGCTACTGATCCTTTTGTGGTCCTAGAATCAACCACTTCTACTGATCTGTT 802
Query 882 CGTGGATCCTCTTGAAGAATTTGCTGCTACAGTCAGCTCTCAGGGGATAAAACCATCAAA 941
|||||||||||||||||||||||||||| |||||| |||||||||| |||| |||||||
Sbjct 803 CGTGGATCCTCTTGAAGAATTTGCTGCTTCAGTCATTTCTCAGGGGAAAAAAACATCAAA 862
Query 942 TACTTCACATACTTCTACAAAACTCAAGCCTCCGCCTAAACCAACACAAAAAGTGAACAG 1001
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 863 TACTTCACATACTTCTACAAAACTCAAGCCTCCGCCTAAACCAACCCAAAAAGTGAACAG 922
Query 1002 AGGTAAGAGTGTAGGAATGTCTTCAATAGACGAACTTGAAGACTTTGCCATGGGTACTAT 1061
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 923 AGGTAAGAGTGTAGAAATGTCTTCAATAGACGAACTTGAAGACTTTGCCATGGGAACAAT 982
Query 1062 GCGACGTAGTGCCTCCGCTTCTGACACTGCTAGTAAATATAGAGAAGCTGAAGATGCTGC 1121
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 983 GCGACGTAGTGCCTCTGCTTCTGACACTGCTAGTAAATATAGAGAAGCTGAAGATACTGG 1042
Query 1122 AACGAAGAATAAACAGTTTGGTGTAGATGACCTTGACTCCTTTTTTAGCGCT----C--G 1175
||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1043 AACAAAGAATAAACAGTTTGGTGTAGATGACCTTGACTCCTTTTTTAGCGCTGGACCGAG 1102
Query 1176 GTCCAGCAGTGTACCGAAATCACGTACCACTACTGAAACAACTCGCAAGCAAGCGTCCAA 1235
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1103 GTCTAGCAGTGTACCGAAATCACGTACCACAACTGAAACAACTCGCAAGCAAGCGTCCAA 1162
Query 1236 CGCACCAAAAAAGACCCCTAATGGGGTTTCTAATGCAAAGAAGCCTCCTGCTCCAGCAAA 1295
| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1163 CACGCCAAAAAAGACGCCTAATGGGGTTTCTAAGGCAAAGAAGCCTCCTGCTCCAGCAAA 1222
Query 1296 TCTGGTGGATGACTTTTCTGCACTTTTTGGAGAGGATCCTATATTTAGACAATTTGAGGA 1355
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1223 TCTGGTGGATGACTTTTCTGCACTCTTTGGAGAGGATCCTATATTTAGACAATTTGAGGA 1282
Query 1356 AATCCCAGGGGAAAGCGAAGAACGAAGAAAGGCCAGATGGGATCGTGAACAGAGAACAAA 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 AATCCCAGGGGAAAGCGAAGAACGAAGAAAGGCCAGATGGGATCGTGAACAGAGAACAAA 1342
Query 1416 GAGTCGTGTGGCTCAAGCTGTAGCTGATATGAATAACCGTGATCATCAATCTCGGATTGA 1475
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1343 GAGCCGTGTGGCACAAGCTGTTGCTGATATGAATAACCGTGATCATCAATCTCGGATTGA 1402
Query 1476 ACAAGAACAGAGAACTAGGATTTCTGAGACTGTTGATACTGAGATAAGGCGTTGGGCAAC 1535
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1403 ACAAGAACAGAGAACTAGGATTTCTGAGACTGTTGATGCTGAGATAAGGCGTTGGGCAAC 1462
Query 1536 TGGAAAAGAAGGAAACATGCGTGCGCTGTTATCTTCCTTGCACATCGTACTCTGGCCCGG 1595
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1463 TGGTAAAGAAGGAAACATGCGTGCGCTGTTATCTTCCTTGCAAATCGTACTCTGGCCCGG 1522
Query 1596 ATGTGGTTGGGAGGCTGTTTC-CATAACAGATTTGATCACTTCGTCAGCAGTCAAGAAAG 1654
||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1523 ATGTGGTTGGGAGACTGTTTCTC-TAACAGATTTGATCACTTCGTCAGCAGTCAAGAAAG 1581
Query 1655 TCTATAGAAAGGCAACACTGTATGTCCATCCCGATAAAGTTCAGCAGAAAGGAGCCACCC 1714
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 TCTATAGAAAGGCAACGCTGTATGTCCATCCCGATAAAGTTCAGCAGAAAGGAGCCACCC 1641
Query 1715 TTGAACAAAAGTATATCGCCGAAAAGGTTTTTGACATTTTGAAGGAAGCTTGGAACAAGT 1774
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 TTGAACAAAAGTATATTGCTGAAAAGGTTTTTGACATTTTGAAGGAAGCTTGGAACAAGT 1701
Query 1775 TCAACAAGGAGGAGCTCTCTTAAGCCCATATACTGTGAATATAGTTGCTCTCTGTACAAC 1834
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 1702 TCAACAAGGAGGAGCTCTCTTAAGCCCATATGCTGTGGATATAGTTGCTTTCTGTACAAC 1761
Query 1835 TATAATTCGTCTGTGAGTTTCCTCGAGTCTTTTCTTGTTTTTAATCTTCTTGTTTATGAT 1894
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 1762 TATAATTCGTCTGTGAGTTTCCTCGAGTCTTTTCTTGTTTTTTATCTTCTTGTCTCTGAT 1821
Query 1895 TTTTTCCTTTGACCGTAACTTGTCATCTTTCTGTACACCCAACAACAA-AAA--TCCATG 1951
|||| |||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 1822 TTTT-CCTTTGACGGTAACTTGTCATCATTCTGTACACCCAACAACAACAAAAATCCATG 1880
Query 1952 GGGGATATTGTATAGCCCCAAAAACCGAAATAGAGTTTCTTTTTATAAGATATATATTGA 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 GGGGATATTGTATAGCCCCAAAAACCGAAATAGAGTTTCTTTTTATAAGATATATATTGA 1940
Query 2012 ATGTTTTTA 2020
|||||||||
Sbjct 1941 ATGTTTTTA 1949
Score = 67.6 bits (36), Expect = 3e-10
Identities = 39/40 (98%), Gaps = 1/40 (3%)
Strand=Plus/Plus
Query 1 ACACCGTCGGTGCCCTCACGGATCAATTTCTagagagaga 40
|||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ACACCGTCGGTGCCCTCACGGATCAATTTCTA-AGAGAGA 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76218580245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5