BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21680.1 Length=2335 Score E Sequences producing significant alignments: (Bits) Value Ahg472406 jgi|Araly1|472406|fgenesh2_kg.1__2360__AT1G21680.1 3262 0.0 > Ahg472406 jgi|Araly1|472406|fgenesh2_kg.1__2360__AT1G21680.1 Length=2273 Score = 3262 bits (1766), Expect = 0.0 Identities = 2076/2227 (93%), Gaps = 16/2227 (1%) Strand=Plus/Plus Query 19 CCGCCATGAATATAT-CTCAGATTATTTTCTTCGCGTCCCTTCTTCTACGGCTTCACTTA 77 ||||||||||||| | |||||||||| ||| ||||||||||||| |||| |||||| | Sbjct 1 CCGCCATGAATAT-TGCTCAGATTATCTTCCTCGCGTCCCTTCTGCTACCACTTCACGCA 59 Query 78 TCAACGGCGGAACATCAAAATTCAAACGCTGGTGATGGAGACACCATCATATTCACCACT 137 ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 60 TCAACTTTGGAACATCAGAATTCGAACGCTGGTGATGGAGACACCATCATATTCACCACT 119 Query 138 CTAGGACGATCGCACTACGAATTTGACATATTCGCCCTCTCCACGACTCAACCGCCGTCA 197 ||||||||||||| ||||||||| ||||||||| ||||||| |||||||| || ||||| Sbjct 120 CTAGGACGATCGCGCTACGAATTCGACATATTCTCCCTCTCAACGACTCATCCACCGTCC 179 Query 198 GTTTCCGGA-GAGCTCCGAATCACCGATGGGGAATCGGTAAATTTCAACGGCTATTTCCC 256 | |||| | |||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 180 GATTCC-AACGAGCTCCGTATCACCGATGGAGAATCGGTAAACTTCAACGGCTATTTCCC 238 Query 257 GTCTCCTTCTCCGGCTCT-ATTATCTCTCCTTCCCGACGAAACCCTAATTCAAATGGAAG 315 ||||||||||||||| || | | ||||||||||| |||||||||||||||||| | |||| Sbjct 239 GTCTCCTTCTCCGGCGCTCA-TCTCTCTCCTTCCTGACGAAACCCTAATTCAACTTGAAG 297 Query 316 ATTCGTCTCCTCTGCATCTCATATACGTCACCGAGAGAAACGGTACTTCTAGCTTGTACT 375 |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| Sbjct 298 ATTCGTCTCCTCTGCATCTCATCTACGTCACCGAGAGAAACGGTACTTCTAGCATATACT 357 Query 376 ACGATCTAGTTTACGGCGGTAATTCTGATTTTAAAACGAAACGAAGATCGGTGTTAGAAG 435 |||||||| |||||||||| | || |||| ||||| ||||||| ||||||||||||||| Sbjct 358 ACGATCTAATTTACGGCGGCGACTCCGATTCTAAAATGAAACGACGATCGGTGTTAGAAG 417 Query 436 CACCGTCTCGAGTCCAAGTTCCGTTGTTATCCCGCTTTGATCATCTGAGTGGCATGACGG 495 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 418 CACCGTCTCGAGTCCAAGTTCCGTTGTTATCCGGCTTTGATCATCGGAGTGGCATGACGG 477 Query 496 TAAATTCTTTTAAAGATAAGCCTAGTTTGAGTGGTGAGTTTATTGTCTACGTGTCAACCC 555 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 478 TAAATTCATTTAAAGATAAGCCTAGTTTGAGTGGTGAGTTTCTTGTCTACGTGTCAACTC 537 Query 556 ATGAGAGCTCAGGTGAGCCGAGAGCAAGCTGGACCGCCGTTTACTCTACCGAGTTAAAAA 615 | || | |||||||||||||||| ||||||||||||||||||||||||||||||| | || Sbjct 538 ACGAAAACTCAGGTGAGCCGAGAACAAGCTGGACCGCCGTTTACTCTACCGAGTTGAGAA 597 Query 616 CCGGGTTAACCAGGCGGTTAACACCGAGTGGTGTAGCTGATTTCAGCCCGGCGGTATCGC 675 | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 598 CTGGGTTAACCCGGCGGTTAACACCGAGTGGTGTAGCTGATTTTAGCCCGGCGGTGTCGC 657 Query 676 CTTCCGGAAATTTAACGGCTGTGGCTTCATACGGAGAGAGAGGCTGGACAGGGGAAGTTG 735 |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 658 CTTCCGGAAATTTAACAGCCGTGGCTTCGTACGGAGAGAGAGGCTGGACAGGGGAAGTTG 717 Query 736 AAGAGC-TACGTACGGACATCTATGTATTCTTGACTCGGGATGGGTCTCACCGTGTCAAG 794 |||||| || |||||||||| |||||||||| ||||||||||||| ||||||| |||||| Sbjct 718 AAGAGCTTA-GTACGGACATATATGTATTCTCGACTCGGGATGGGACTCACCGAGTCAAG 776 Query 795 GTGGTGGAGCACGGTGGTTGGCCGTGTTGGGTTGATGAGTCGACTCTGTATTTCCATAGA 854 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 777 GTGGTGGAGCACGGTGGTTGGCCGTGTTGGGTCGATGAGTCGACTCTGTATTTCCATAGA 836 Query 855 AGAAGTGAGGAGGATGGTTGGATCAGCGTTTACCGAGCCATCTTACCTGAAAACGGACCG 914 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 837 AGAAGCGAGGAGGATGGTTGGATCAGCGTTTACCGAGCTATCTTACCTGAAAACGGACCG 896 Query 915 TTGACTACTGAGTCGGTGACAATTCAGCGAGTCACACCACCGGGAGTTCACGCTTTCACA 974 |||||||| ||||| ||||| || || ||||||||||||||||||||||||||||| ||| Sbjct 897 TTGACTACAGAGTCAGTGACTATACAACGAGTCACACCACCGGGAGTTCACGCTTTTACA 956 Query 975 CCGGCCACGTCACCAAACAACCACGAGTTCGTTGCGGTAGCTACAAGGAGACCAGGCTCG 1034 || ||||||||||||||||||||||||||| | ||||| || || ||||||||||||||| Sbjct 957 CCTGCCACGTCACCAAACAACCACGAGTTCATAGCGGTGGCGACGAGGAGACCAGGCTCG 1016 Query 1035 GATTACCGCCACGTGGAGTTGTTTGATCTAAAGAGGAATGAGTTTATAGAGTTGACTCGT 1094 ||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||||||| Sbjct 1017 GATTACCGCCACGTGGAGTTGCTTGATCTACAGAGGAATGAGTTTATTGAGCTGACTCGT 1076 Query 1095 TTGGTGGCGCCAAAGAGTCATCACTTGAATCCATTCTTGTCCCCTGACTCGTCTCGAGTC 1154 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 1077 TTGGTGGCGCCAAAGAGTCATCACTTGAATCCGTTCTTGTCCCCTGATTCGTCTCGAGTC 1136 Query 1155 GGATATCATAGTTGTAGAGGCGATGCTAATGGACGGAGAAGTCCTCTGCTCTTCCTTGAA 1214 ||||| ||||||||||||||||| ||||| |||||||||||||||||||| || || || Sbjct 1137 GGATACCATAGTTGTAGAGGCGAGGCTAACGGACGGAGAAGTCCTCTGCTTTTTCTAGAG 1196 Query 1215 AATATTCAAACCACTACAAGGGACCTCTCTCTCTTTAGAATTGATGGTTCGTTTCCTTCG 1274 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1197 AATATACAAACCACTACAAGGGACCTCTCTCTCTTTAGAATCGATGGTTCGTTTCCTTCC 1256 Query 1275 TTCTCACCTGGAGGTGATCGTATCGCATACGTTAAGATGCCTGGTGTGTTTGTGGTGAAG 1334 ||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||| Sbjct 1257 TTCTCACCTGGAGGTGATCGTATTGCATACGTCAAAATGCCTGGTGTATTTGTGGTGAAG 1316 Query 1335 CCGGATGGTTCAGGGCAGCGTGAAGTGTACAAGGGAATGGCGTTTTCGACAGCTTGGGAT 1394 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1317 CCGGATGGTTCAGGGCAGCGTGAAGTGTACAACGGAATGGCGTTTTCGACGGCTTGGGAT 1376 Query 1395 CCGGTTCGACCTGGAATTGTGTACTCTAGCTCAGGTCCAACGTTTGCTACAGAGAGAACA 1454 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 CCGGTTCGACCTGGAGTTGTGTACTCTAGCTCAGGTCCAACGTTTGCTACAGAGAGAACA 1436 Query 1455 GAGGTTGATGTTATCTCTATTGACGTTGATGCAGCCGATAAGTCATCTTCCGTGAGGAGG 1514 ||||||||||| ||||||||||| || |||||||| || ||||||||||||||||||||| Sbjct 1437 GAGGTTGATGTCATCTCTATTGAAGTCGATGCAGCTGACAAGTCATCTTCCGTGAGGAGG 1496 Query 1515 CTAACGACAAACGGGAAGAACAATGCTTTCCCTTGGCCATCTCCTGATGGTAAGCGGATA 1574 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1497 CTAACGACAAACGGGAAGAACAATGCTTTCCCTTGGCCATCTCCGGATGGTAAGCGGATA 1556 Query 1575 GTGTTTCGTTCGGGGCGGACTGGTCACAAAAACCTCTACATAATGGATGCTGAGAAAGGA 1634 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1557 GTGTTTCGTTCGGGCCGGACTGGTCACAAAAACCTCTACATAATGGATGCTGAGAAAGGC 1616 Query 1635 GAAAGCGGTGGTCTATGGAGGTTAACCGAAGGTGCGTGGACCGACACAATGTGTAACTGG 1694 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1617 GAAAGAGGTGGTCTATGGAGGTTAACCGAAGGTGCGTGGACTGACACAATGTGTAACTGG 1676 Query 1695 TCACCGGATGGGGAATGGATCGCGTTTGCATCAGATCGAGAAAGCCCTGGCTCGGGTAGT 1754 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1677 TCACCGGATGGGGAATGGATCGCGTTTGCATCCGATCGAGAAAGCCCTGGCTCGGGTAGT 1736 Query 1755 TTTGAGCTCTTCTTGATCCACCCCAACGGAACAGGGTTAAGGAAGCTCATCCAAAGCGGG 1814 || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1737 TTCGAGCTCTTCTTGATCCACCCCAACGGAACAGGGTTTAGGAAACTCATCCAAAGCGGG 1796 Query 1815 ACGGGTGGGAGAACAAACCACCCGATCTTCAGCCCGGACAGTAAATCATTAGTCTTCACT 1874 || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1797 ACAGGTGGGAGAACAAACCACCCAATCTTCAGCCCGGACAGTAAATCATTAGTCTTCACA 1856 Query 1875 TCTGATTATGCTGGAATCTCGGCGGAACCGATCTCGAACCCGCATCATTACCAGCCATAC 1934 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1857 TCTGATTATGCTGGGATCTCAGCGGAACCGATCTCGAACCCGCATCATTACCAGCCATAC 1916 Query 1935 GGTGATATCTTCACGGTGAAATTAGATGGCTCTAATGTGAGGAGGCTAACGCATAACTCT 1994 |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct 1917 GGTGATATCTTCACGGTGAAATTAGATGGCTCAAATTTGAGGAGGCTGACGCATAACTCT 1976 Query 1995 TATGAAGATGGGACACCGGCATGGGCCCCTCGGTTCATCCACCCCAACAATGTGGAGCTA 2054 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1977 TATGAAGATGGGACACCGGCATGGGCCCCTCGGTTCATCCACCCGAACAATGTGGTGCTG 2036 Query 2055 CAAAGGAGGAATGATTCTAGGTGCTCGTTCGAAGACTGTCACTGGCTCAACAAGTACCCT 2114 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2037 CAAAGGAGGAACGATTCTAGGTGCTCGTTCGAAGACTGTCACTGGCTAAACAAGTACCCT 2096 Query 2115 ACACTAAAAGGCCGAAAAATATCTTGTTAATATGTATC-T-A---CAGTTTTGTATCCCA 2169 |||||||||||||||||||| |||||||||||||||| | | ||| ||||||||| Sbjct 2097 ACACTAAAAGGCCGAAAAATCTCTTGTTAATATGTATGATTAGAACAGAAATGTATCCCA 2156 Query 2170 GCTTGTAACTCTACT--T-ATAGATTTGTATGAGACTGCCACTGTATATGCATAAGACTT 2226 ||||||||||||||| | ||| |||||||||||||||||| |||||||| ||||||||| Sbjct 2157 GCTTGTAACTCTACTACTTATATATTTGTATGAGACTGCCAATGTATATGTATAAGACTT 2216 Query 2227 TGTATTA 2233 ||||||| Sbjct 2217 TGTATTA 2223 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87950375705 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5