BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G21710.1 Length=1388 Score E Sequences producing significant alignments: (Bits) Value Ahg921153 jgi|Araly1|921153|scaffold_102434.1 1731 0.0 > Ahg921153 jgi|Araly1|921153|scaffold_102434.1 Length=1141 Score = 1731 bits (937), Expect = 0.0 Identities = 1078/1145 (94%), Gaps = 14/1145 (1%) Strand=Plus/Plus Query 24 TCCGTTAACGAGCAACGGCGATGAAGAGACCTCGACCTACATCTCAGCCGTCGATCTCTT 83 ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| Sbjct 1 TCCGTTAACGAGCAACGGCGATGAAGAGACCTCGAGCTACATCACCGCCGTCGATCTCTA 60 Query 84 CCACCGTCAAACCACCACTGTCTCCGCCGGTCACACCGATTCTCAAACAGAAGCTACACA 143 ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 61 CCACCGTGAAACCACCACTGTCTCCGCCGGTCACGCCGATTCTGAAACAGAAGCTACACA 120 Query 144 GAACAGG---AACACCTAAATGGTTCCCGTTAAAACTAACCCACACGGAGCTGACGT-TG 199 ||||||| |||||||||||||||| ||||||||||||||||||||||||| || | | Sbjct 121 GAACAGGAACAACACCTAAATGGTTCTCGTTAAAACTAACCCACACGGAGCTCAC-TCTA 179 Query 200 CCGTTAACTTTTCCGACGGGTCAAACATTCCGGTGGAAGAAAACTGGAGCGATTCAGTAT 259 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 180 CCGTTAACTTTTCCGACGGGCCAAACATTCCGGTGGAAGCAAACTGGAGCGATTCAGTAT 239 Query 260 AGCGGAACGATTGGGCCTCACT-TAGTCTCTCTTAGACAACGTCCAGGAGACGACGCAGT 318 |||||||||||||||||||| | | ||||||||| ||||||||||||| |||||| |||| Sbjct 240 AGCGGAACGATTGGGCCTCA-TCTCGTCTCTCTTCGACAACGTCCAGGTGACGACACAGT 298 Query 319 TTCCTACTGCGTCCATTGTAGCACAAGCCCTAAATCCGCGGAGCTTGCGTTGCTCGATTT 378 |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| Sbjct 299 TTCCTACTGCGTCCATTGCAGCACTAGCCCTAAATCAGCGGAGCTTGCGTTGCTTGATTT 358 Query 379 TCTCAATGCTGAGATCTCGTTAGCTGAGCTATGGTCTGATTTCTCGAAAAAAGATCCTCG 438 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 359 TCTCAATGCTGAGATCTCGTTAGCTGAGCTATGGTCTGATTTCTCGAAAAAGGATCCTCG 418 Query 439 TTTCGGAGAGCTAGCG-AGACATCTCCGTGGCGCTCGTGTGTTGAGGCAGGATCCGCTCG 497 ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| | Sbjct 419 TTTCGGAGAATTAGCGAAG-CATCTCCGTGGCGCTCGTGTGTTGAGGCAGGATCCGCTGG 477 Query 498 AGTGCTTGATACAGTTTTTGTGCTCATCGAACAATAACATTGCG-AGGATTACGAAGATG 556 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 478 AGTGCTTGATACAGTTTTTGTGCTCATCGAACAATAACATTG-GAAGGATTACGAAGATG 536 Query 557 GTGGATTTTGTTTCGTCTTTAGGGTTACATTTGGGTGACATTGATGGATTTGAGTTTCAT 616 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GTCGATTTTGTTTCGTCTTTAGGGTTACATTTGGGTGACATTGATGGATTTGAGTTTCAT 596 Query 617 CAGTTCCCATCATTGGATCGATTATCTAGGGTTTCTGAGGAAGAGTTTAGAAAGGCTGGT 676 |||||||||||||||||||||||||||||||||||||| | ||||||||| || |||||| Sbjct 597 CAGTTCCCATCATTGGATCGATTATCTAGGGTTTCTGAAGCAGAGTTTAGGAATGCTGGT 656 Query 677 TTTGGTTACAGAGCCAAATACATAACAGGTACAGTGAATGCTTTGCAAGCAAAGCCAGGT 736 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 657 TTTGGTTACAGAGCCAAATACATAACAGGTACAGTGAATGCTTTGCAATCAAAGCCAGGT 716 Query 737 GGTGGTAATGAATGGCTTCTTTCTCTGCGCAAAGTCGAACTCCAAGAGGCAGTTGCTGCG 796 ||||| ||||||||||||||||||| || ||| | || ||||||||||||||| |||| Sbjct 717 GGTGGCGATGAATGGCTTCTTTCTCTACGAAAATTGGATCTCCAAGAGGCAGTTTCTGCT 776 Query 797 CTGTGTACATTACCTGGTGTTGGTCCGAAGGTAGCAGCTTGCATAGCTCTGTTTTCTCTT 856 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 777 CTGTGTACATTACCTGGTGTTGGTCCAAAGGTAGCAGCTTGCATAGCTCTGTTTTCTCTT 836 Query 857 GATCAGCATAGTGCTATTCCGGTTGACACACATGTCTGGCAGATCGCAACAAATTATCTA 916 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 837 GATCAGCATAGTGCTATTCCCGTTGACACACATGTCTGGCAGATCGCAACAAATTATCTA 896 Query 917 CTGCCAGACCTTGCTGGTGCAAAACTGACACCTAAACTCCA-TGGCCGAGTTGCAGAAGC 975 ||||||||||||||||||||||||||||||| ||||||||| | || |||| |||||||| Sbjct 897 CTGCCAGACCTTGCTGGTGCAAAACTGACACTTAAACTCCACT-GCAGAGTGGCAGAAGC 955 Query 976 CTTTGTGAGTAAATATGGTGAATATGCTGGTTGGGCTCAAACATTGCTTTTCATTGCCGA 1035 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 ATTTGTGAGTAAATATGGTGAATATGCTGGTTGGGCTCAAACATTGCTTTTCATTGCCGA 1015 Query 1036 GTTACCTGCACAAAAAACTCTCTTGCAATCGTTTTCCCAGCCCATTAACAAACTGGATGA 1095 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1016 GTTACCTGCACAAAAAACTCTCTTGCAATCGTTTTCCCAGCCCATTAGCAAACTGGATAA 1075 Query 1096 GTCTGCAGAAGTTAATGAAACTAGCTGTGATACGTTGAAGCCATGACTATG-TGTCTACC 1154 ||| | |||| |||||||||||||||||| ||| |||||||||||||||| |||||||| Sbjct 1076 TTCTACGGAAGATAATGAAACTAGCTGTGACACGATGAAGCCATGACTATGCTGTCTACC 1135 Query 1155 TAAGC 1159 ||||| Sbjct 1136 TAAGC 1140 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51878913690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5