BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G21710.1

Length=1388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921153 jgi|Araly1|921153|scaffold_102434.1                       1731    0.0  


> Ahg921153 jgi|Araly1|921153|scaffold_102434.1
Length=1141

 Score = 1731 bits (937),  Expect = 0.0
 Identities = 1078/1145 (94%), Gaps = 14/1145 (1%)
 Strand=Plus/Plus

Query  24    TCCGTTAACGAGCAACGGCGATGAAGAGACCTCGACCTACATCTCAGCCGTCGATCTCTT  83
             ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| 
Sbjct  1     TCCGTTAACGAGCAACGGCGATGAAGAGACCTCGAGCTACATCACCGCCGTCGATCTCTA  60

Query  84    CCACCGTCAAACCACCACTGTCTCCGCCGGTCACACCGATTCTCAAACAGAAGCTACACA  143
             ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct  61    CCACCGTGAAACCACCACTGTCTCCGCCGGTCACGCCGATTCTGAAACAGAAGCTACACA  120

Query  144   GAACAGG---AACACCTAAATGGTTCCCGTTAAAACTAACCCACACGGAGCTGACGT-TG  199
             |||||||   |||||||||||||||| ||||||||||||||||||||||||| || | | 
Sbjct  121   GAACAGGAACAACACCTAAATGGTTCTCGTTAAAACTAACCCACACGGAGCTCAC-TCTA  179

Query  200   CCGTTAACTTTTCCGACGGGTCAAACATTCCGGTGGAAGAAAACTGGAGCGATTCAGTAT  259
             |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct  180   CCGTTAACTTTTCCGACGGGCCAAACATTCCGGTGGAAGCAAACTGGAGCGATTCAGTAT  239

Query  260   AGCGGAACGATTGGGCCTCACT-TAGTCTCTCTTAGACAACGTCCAGGAGACGACGCAGT  318
             |||||||||||||||||||| | | ||||||||| ||||||||||||| |||||| ||||
Sbjct  240   AGCGGAACGATTGGGCCTCA-TCTCGTCTCTCTTCGACAACGTCCAGGTGACGACACAGT  298

Query  319   TTCCTACTGCGTCCATTGTAGCACAAGCCCTAAATCCGCGGAGCTTGCGTTGCTCGATTT  378
             |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct  299   TTCCTACTGCGTCCATTGCAGCACTAGCCCTAAATCAGCGGAGCTTGCGTTGCTTGATTT  358

Query  379   TCTCAATGCTGAGATCTCGTTAGCTGAGCTATGGTCTGATTTCTCGAAAAAAGATCCTCG  438
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  359   TCTCAATGCTGAGATCTCGTTAGCTGAGCTATGGTCTGATTTCTCGAAAAAGGATCCTCG  418

Query  439   TTTCGGAGAGCTAGCG-AGACATCTCCGTGGCGCTCGTGTGTTGAGGCAGGATCCGCTCG  497
             |||||||||  ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct  419   TTTCGGAGAATTAGCGAAG-CATCTCCGTGGCGCTCGTGTGTTGAGGCAGGATCCGCTGG  477

Query  498   AGTGCTTGATACAGTTTTTGTGCTCATCGAACAATAACATTGCG-AGGATTACGAAGATG  556
             |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  478   AGTGCTTGATACAGTTTTTGTGCTCATCGAACAATAACATTG-GAAGGATTACGAAGATG  536

Query  557   GTGGATTTTGTTTCGTCTTTAGGGTTACATTTGGGTGACATTGATGGATTTGAGTTTCAT  616
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  537   GTCGATTTTGTTTCGTCTTTAGGGTTACATTTGGGTGACATTGATGGATTTGAGTTTCAT  596

Query  617   CAGTTCCCATCATTGGATCGATTATCTAGGGTTTCTGAGGAAGAGTTTAGAAAGGCTGGT  676
             |||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||
Sbjct  597   CAGTTCCCATCATTGGATCGATTATCTAGGGTTTCTGAAGCAGAGTTTAGGAATGCTGGT  656

Query  677   TTTGGTTACAGAGCCAAATACATAACAGGTACAGTGAATGCTTTGCAAGCAAAGCCAGGT  736
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  657   TTTGGTTACAGAGCCAAATACATAACAGGTACAGTGAATGCTTTGCAATCAAAGCCAGGT  716

Query  737   GGTGGTAATGAATGGCTTCTTTCTCTGCGCAAAGTCGAACTCCAAGAGGCAGTTGCTGCG  796
             |||||  ||||||||||||||||||| || ||| | || ||||||||||||||| |||| 
Sbjct  717   GGTGGCGATGAATGGCTTCTTTCTCTACGAAAATTGGATCTCCAAGAGGCAGTTTCTGCT  776

Query  797   CTGTGTACATTACCTGGTGTTGGTCCGAAGGTAGCAGCTTGCATAGCTCTGTTTTCTCTT  856
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  777   CTGTGTACATTACCTGGTGTTGGTCCAAAGGTAGCAGCTTGCATAGCTCTGTTTTCTCTT  836

Query  857   GATCAGCATAGTGCTATTCCGGTTGACACACATGTCTGGCAGATCGCAACAAATTATCTA  916
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  837   GATCAGCATAGTGCTATTCCCGTTGACACACATGTCTGGCAGATCGCAACAAATTATCTA  896

Query  917   CTGCCAGACCTTGCTGGTGCAAAACTGACACCTAAACTCCA-TGGCCGAGTTGCAGAAGC  975
             ||||||||||||||||||||||||||||||| ||||||||| | || |||| ||||||||
Sbjct  897   CTGCCAGACCTTGCTGGTGCAAAACTGACACTTAAACTCCACT-GCAGAGTGGCAGAAGC  955

Query  976   CTTTGTGAGTAAATATGGTGAATATGCTGGTTGGGCTCAAACATTGCTTTTCATTGCCGA  1035
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  956   ATTTGTGAGTAAATATGGTGAATATGCTGGTTGGGCTCAAACATTGCTTTTCATTGCCGA  1015

Query  1036  GTTACCTGCACAAAAAACTCTCTTGCAATCGTTTTCCCAGCCCATTAACAAACTGGATGA  1095
             ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct  1016  GTTACCTGCACAAAAAACTCTCTTGCAATCGTTTTCCCAGCCCATTAGCAAACTGGATAA  1075

Query  1096  GTCTGCAGAAGTTAATGAAACTAGCTGTGATACGTTGAAGCCATGACTATG-TGTCTACC  1154
              ||| | |||| |||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct  1076  TTCTACGGAAGATAATGAAACTAGCTGTGACACGATGAAGCCATGACTATGCTGTCTACC  1135

Query  1155  TAAGC  1159
             |||||
Sbjct  1136  TAAGC  1140



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51878913690


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5