BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G21790.1
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472418 jgi|Araly1|472418|fgenesh2_kg.1__2372__AT1G21790.1 1622 0.0
Ahg913701 jgi|Araly1|913701|Al_scaffold_0001_3955 516 2e-145
> Ahg472418 jgi|Araly1|472418|fgenesh2_kg.1__2372__AT1G21790.1
Length=1203
Score = 1622 bits (878), Expect = 0.0
Identities = 1053/1135 (93%), Gaps = 22/1135 (2%)
Strand=Plus/Plus
Query 1 ATCGACCGACACGTGTCCGTTGCGTCCC-AA-A-G-----TAAAGC-TTATAACGTGAAG 51
|||||||||||||||||||||||||||| || | | | |||| | | |||||||||
Sbjct 1 ATCGACCGACACGTGTCCGTTGCGTCCCAAAGAGGCTCTTTTAAGCGTAAAAACGTGAAG 60
Query 52 GCATTTGTATCGTCTCTTCCGCCAAAATTGGAAATGGATATCGAAGTTTGAGCTAAG--- 108
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 61 GCATTTGTATCGTCTCTTCCGCCAAAATTGGAAATGGATATCGGAGCTTGAGCTAAGAAC 120
Query 109 AATCCAATTTAGGGTTAACTTTGCCGGATTCTCAAGCAATCTCCGAGAGAGACA-GTGAG 167
||||||||||||||||| |||||||||||||||||||||||||||||||| | | | | |
Sbjct 121 AATCCAATTTAGGGTTATCTTTGCCGGATTCTCAAGCAATCTCCGAGAGAAAGAGGAGGG 180
Query 168 GTTTCGATGGCGAGGAACGGGATTGGGAGTTCAGGAGGGAAGAAGAATGGGGCTGG-GCA 226
|||||||||||||||||||||||||||| | |||| |||||||||||||||||| | |
Sbjct 181 GTTTCGATGGCGAGGAACGGGATTGGGAACACGGGAGTGAAGAAGAATGGGGCTGGTG-A 239
Query 227 GTTTTTCTTAGCGACGCTGCTTCTTTGGCTTGTCTCCGTCGTGTTTGAGATTGCTTTCAA 286
||||||| | |||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 240 GTTTTTCCTGGCGACGCTGCTTCTATGGCTGGGCTCCGTCGTGTTTGAGATTGCTTTCAA 299
Query 287 TCTCCGGACGGAGCTTCTCTGGGTGATTTGCGGTGGATGCTTCTTTCAATTGATGAATTG 346
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TCTCCGGACGGAGCTTCTATGGGTGATTTGCGGTGGATGTTTCTTTCAATTGATGAATTG 359
Query 347 GGTTGTTCGTTCATGGATTTCTCGTGACCCTATATTTGTTAATACCTCTGTCTCGCTTTT 406
||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 360 GGTGGTTCGTTCTTGGATTTCTCGTGACCCTCTCTTTGTTAATACCTCTGTCTCGCTATT 419
Query 407 GCACTCAATCATCACCTCCGCATCAGTGGTTTTCATACTTCTCAATCAATGCTTAGCCAA 466
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 420 GCACTCAATCATCACCTCCGCATCAGTGGTTTTCATTCTGCTCAATCAATGCTTAGCCAA 479
Query 467 AGGTTTAGACGAGATGTTTGATCATTCTGAGTTGGTTGGTGGGACTTGGAAATGGGCATA 526
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 AGGTTTAGACGAGATGTTCGATCATTCTGAGTTGGTTGGTGGTACTTGGAAATGGGCATA 539
Query 527 TCCAGCTTTGTGTTTCTCATGCGGCTACTTTGCATATGACCAGTGGGATATGCTTCAGTA 586
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 TCCAGCTTTGTGTTTCTCATGCGGATACTTTGCATATGACCAGTGGGATATGCTTCAGTA 599
Query 587 CCGGTTATACAGCGGCTTAATACCTTCTATTCTTGTTCACCATCTAGTCCTCCTTGTTTG 646
||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 600 CCGATTATACAGCGGGTTAATACCTTCCATTCTGGTTCACCATCTAGTCCTCCTTGTTTG 659
Query 647 CTTCACATTGGCACTATACCGAAATGTAACCATCAACTACCTTATTCTTACTCTCATCTG 706
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 660 CTTCACATTGGCTCTATACCGAAATGTAACCATCAACTACCTGATTCTTACTCTCATTTG 719
Query 707 TGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGAGAATGGCAGGAATCCGAGA 766
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 TGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGAGAATGGCGGGAATCCGAGA 779
Query 767 CAGCAACACAGCATTGGTGAAACTGGAGTGGGTATTAAACTGGACAGCCTTTGTGTTTGC 826
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 CAGCAACACAGCATTGGTGAAACTGGAGTGGGTGCTAAACTGGACAGCCTTTGTGTTTGC 839
Query 827 GAGATGCATTCCTCACATTCTCATCACTATCAAGCTGATCAAAGACGCACACAAGTTTGG 886
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGGTGCATTCCTCACATTCTCATCACTATCAAGCTGATCAAAGACGCACACAAGTTTGG 899
Query 887 GAAAGGCGTGGAGTTACCACTCGCTCTGTCTGGTATGGCAGGAATGAACATTCTTAATGT 946
|||||| ||||||||||| |||||| ||||||||||||| ||||||||||| || |||||
Sbjct 900 GAAAGGTGTGGAGTTACCGCTCGCTTTGTCTGGTATGGCGGGAATGAACATCCTCAATGT 959
Query 947 TGGCCTCGGGTTGGATCTGTTTCATGCTTTCAGAAGAGAGAGAAGCCACAGAAGAAACCA 1006
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 960 CGGCCTCGGATTGGATCTGTTTCATGCTTTCAGAAGAGAGAGAAGCAACAGAAGAAATCA 1019
Query 1007 AGAGAACGGCAACCTTCACGACCATGGAGAATAATAGCTAATTTAGAGGCAATCC-ATTA 1065
||||||| ||||| |||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 1020 AGAGAACAACAACCATCACGACCATGGAGAATAATAGCTAATTTAGAAACCATCCCATTA 1079
Query 1066 CCGAAT--CTATGGTTTGTTGTTGTATGAATACTACCCACTCATCTCTTGTTTAT 1118
|||| | |||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1080 CCGA-TGGCTATGGTTTGTTGT---ATGACTACTACCCACTCATCTCTTGTTTAT 1130
> Ahg913701 jgi|Araly1|913701|Al_scaffold_0001_3955
Length=1203
Score = 516 bits (279), Expect = 2e-145
Identities = 318/337 (94%), Gaps = 2/337 (1%)
Strand=Plus/Plus
Query 569 GTGGGATATGCTTCAGTACCGGTTATACAGCGGCTTAATACCTTCTATTCTTGTTCACCA 628
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 846 GTGGGATATGCTTCAGTACCGGTTATACAGCGGCTTAATACCTTCCATTGTGGTTCACCA 905
Query 629 TCT-AGTCCTCCTTGTTTGCTTCACATTGGCACTATACCGAAATGTAACCATCAACTACC 687
|| | ||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 906 CCTCA-TCCTCCTCGTTTGCTTCACATTGGCTCTTTACCGAAATGTAACCATCAACTACC 964
Query 688 TTATTCTTACTCTCATCTGTGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGA 747
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TGATTCTTACTCTCATTTGTGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGA 1024
Query 748 GAATGGCAGGAATCCGAGACAGCAACACAGCATTGGTGAAACTGGAGTGGGTATTAAACT 807
||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1025 GAATGGCGGGAATCCGAGACAGCAACACAGCATTGGTGAAACTAGAGTGGGTGCTAAACT 1084
Query 808 GGACAGCCTTTGTGTTTGCGAGATGCATTCCTCACATTCTCATCACTATCAAGCTGATCA 867
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1085 GGACAGCCTTTGTGTTTGCGAGGTGCATTCCTCACATTCTCATCACTGTCAAGCTGATCA 1144
Query 868 AAGACGCACACAAGTTTGGGAAAGGCGTGGAGTTACC 904
|||| ||||||||||||||||||||| ||||||||||
Sbjct 1145 AAGATGCACACAAGTTTGGGAAAGGCCTGGAGTTACC 1181
Score = 420 bits (227), Expect = 1e-116
Identities = 260/276 (94%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 226 AGTT-TTTCTTAGCGACGCTGCTTCTTTGGCTTGTCTCCGTCGTGTTTGAGATTGCTTTC 284
|||| |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 572 AGTTCTTTC-TAGCGACGCTGCTTCATTGGCTGGTCTCCGTCGTGTTTGAGATTGCTTTC 630
Query 285 AATCTCCGGACGGAGCTTCTCTGGGTGATTTGCGGTGGATGCTTCTTTCAATTGATGAAT 344
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 631 AATCTCCGGACGGAGCTTCTCTGGGTGATTTGCGGTGGTTGTTTCTTTCAATTGATGAAT 690
Query 345 TGGGTTGTTCGTTCATGGATTTCTCGTGACCCTATATTTGTTAATACCTCTGTCTCGCTT 404
||||| |||||||| ||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 691 TGGGTGGTTCGTTCTTGGATTTATCGTGACCCTCTCTTTGTTAATACCTCTGTCTCGCTT 750
Query 405 TTGCACTCAATCATCACCTCCGCATCAGTGGTTTTCATACTTCTCAATCAATGCTTAGCC 464
||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 751 TTGCACTCAATTATCACCTCTGCATCAGTGGTTTTCATTCTGCTCAATCAATGCTTAGCC 810
Query 465 AAAGGTTTAGACGAGATGTTTGATCATTCTGAGTTG 500
|||||||||||||||||||| |||||||||||||||
Sbjct 811 AAAGGTTTAGACGAGATGTTCGATCATTCTGAGTTG 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5